Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1145

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1144 and EX28DRAFT_1145 are separated by 11 nucleotidesEX28DRAFT_1145 and EX28DRAFT_1146 are separated by 9 nucleotides EX28DRAFT_1144: EX28DRAFT_1144 - Uncharacterized protein conserved in bacteria, at 1,162,647 to 1,163,864 _1144 EX28DRAFT_1145: EX28DRAFT_1145 - hypothetical protein, at 1,163,876 to 1,164,775 _1145 EX28DRAFT_1146: EX28DRAFT_1146 - Serine phosphatase RsbU, regulator of sigma subunit, at 1,164,785 to 1,165,999 _1146 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1162.919 kb on - strand, within EX28DRAFT_1144at 1162.942 kb on - strand, within EX28DRAFT_1144at 1162.984 kb on + strand, within EX28DRAFT_1144at 1162.985 kb on - strand, within EX28DRAFT_1144at 1162.994 kb on + strand, within EX28DRAFT_1144at 1163.007 kb on + strand, within EX28DRAFT_1144at 1163.008 kb on - strand, within EX28DRAFT_1144at 1163.008 kb on - strand, within EX28DRAFT_1144at 1163.008 kb on - strand, within EX28DRAFT_1144at 1163.018 kb on + strand, within EX28DRAFT_1144at 1163.018 kb on + strand, within EX28DRAFT_1144at 1163.099 kb on - strand, within EX28DRAFT_1144at 1163.099 kb on - strand, within EX28DRAFT_1144at 1163.127 kb on + strand, within EX28DRAFT_1144at 1163.169 kb on + strand, within EX28DRAFT_1144at 1163.169 kb on + strand, within EX28DRAFT_1144at 1163.169 kb on + strand, within EX28DRAFT_1144at 1163.169 kb on + strand, within EX28DRAFT_1144at 1163.169 kb on + strand, within EX28DRAFT_1144at 1163.170 kb on - strand, within EX28DRAFT_1144at 1163.171 kb on + strand, within EX28DRAFT_1144at 1163.171 kb on + strand, within EX28DRAFT_1144at 1163.212 kb on + strand, within EX28DRAFT_1144at 1163.213 kb on - strand, within EX28DRAFT_1144at 1163.222 kb on + strand, within EX28DRAFT_1144at 1163.411 kb on + strand, within EX28DRAFT_1144at 1163.461 kb on + strand, within EX28DRAFT_1144at 1163.462 kb on - strand, within EX28DRAFT_1144at 1163.474 kb on + strand, within EX28DRAFT_1144at 1163.487 kb on - strand, within EX28DRAFT_1144at 1163.541 kb on + strand, within EX28DRAFT_1144at 1163.542 kb on - strand, within EX28DRAFT_1144at 1163.631 kb on + strand, within EX28DRAFT_1144at 1163.631 kb on + strand, within EX28DRAFT_1144at 1163.632 kb on - strand, within EX28DRAFT_1144at 1163.697 kb on + strand, within EX28DRAFT_1144at 1163.698 kb on - strand, within EX28DRAFT_1144at 1163.698 kb on - strand, within EX28DRAFT_1144at 1163.698 kb on - strand, within EX28DRAFT_1144at 1163.719 kb on - strand, within EX28DRAFT_1144at 1163.783 kb on + strandat 1163.789 kb on - strandat 1163.832 kb on + strandat 1163.832 kb on + strandat 1163.833 kb on - strandat 1163.859 kb on - strandat 1163.859 kb on - strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.862 kb on + strandat 1163.863 kb on - strandat 1163.863 kb on - strandat 1164.155 kb on - strand, within EX28DRAFT_1145at 1164.164 kb on + strand, within EX28DRAFT_1145at 1164.230 kb on + strand, within EX28DRAFT_1145at 1164.297 kb on - strand, within EX28DRAFT_1145at 1164.297 kb on - strand, within EX28DRAFT_1145at 1164.350 kb on + strand, within EX28DRAFT_1145at 1164.350 kb on + strand, within EX28DRAFT_1145at 1164.370 kb on + strand, within EX28DRAFT_1145at 1164.439 kb on + strand, within EX28DRAFT_1145at 1164.439 kb on + strand, within EX28DRAFT_1145at 1164.440 kb on - strand, within EX28DRAFT_1145at 1164.479 kb on + strand, within EX28DRAFT_1145at 1164.479 kb on + strand, within EX28DRAFT_1145at 1164.480 kb on - strand, within EX28DRAFT_1145at 1164.541 kb on + strand, within EX28DRAFT_1145at 1164.542 kb on - strand, within EX28DRAFT_1145at 1164.623 kb on + strand, within EX28DRAFT_1145at 1164.630 kb on - strand, within EX28DRAFT_1145at 1164.630 kb on - strand, within EX28DRAFT_1145at 1164.650 kb on + strand, within EX28DRAFT_1145at 1164.805 kb on - strandat 1164.827 kb on + strandat 1164.867 kb on - strandat 1164.909 kb on + strand, within EX28DRAFT_1146at 1164.909 kb on + strand, within EX28DRAFT_1146at 1165.019 kb on + strand, within EX28DRAFT_1146at 1165.019 kb on + strand, within EX28DRAFT_1146at 1165.019 kb on + strand, within EX28DRAFT_1146at 1165.020 kb on - strand, within EX28DRAFT_1146at 1165.059 kb on + strand, within EX28DRAFT_1146at 1165.150 kb on + strand, within EX28DRAFT_1146at 1165.151 kb on - strand, within EX28DRAFT_1146at 1165.151 kb on - strand, within EX28DRAFT_1146at 1165.290 kb on - strand, within EX28DRAFT_1146at 1165.404 kb on + strand, within EX28DRAFT_1146at 1165.405 kb on - strand, within EX28DRAFT_1146at 1165.522 kb on - strand, within EX28DRAFT_1146at 1165.637 kb on - strand, within EX28DRAFT_1146at 1165.673 kb on + strand, within EX28DRAFT_1146at 1165.673 kb on + strand, within EX28DRAFT_1146at 1165.673 kb on + strand, within EX28DRAFT_1146at 1165.674 kb on - strand, within EX28DRAFT_1146at 1165.674 kb on - strand, within EX28DRAFT_1146at 1165.761 kb on + strand, within EX28DRAFT_1146at 1165.761 kb on + strand, within EX28DRAFT_1146

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
1,162,919 - EX28DRAFT_1144 0.22 +0.4
1,162,942 - EX28DRAFT_1144 0.24 +0.0
1,162,984 + EX28DRAFT_1144 0.28 -0.9
1,162,985 - EX28DRAFT_1144 0.28 -0.8
1,162,994 + EX28DRAFT_1144 0.28 +0.3
1,163,007 + EX28DRAFT_1144 0.30 +0.3
1,163,008 - EX28DRAFT_1144 0.30 +0.3
1,163,008 - EX28DRAFT_1144 0.30 +0.4
1,163,008 - EX28DRAFT_1144 0.30 +1.7
1,163,018 + EX28DRAFT_1144 0.30 -0.3
1,163,018 + EX28DRAFT_1144 0.30 +0.1
1,163,099 - EX28DRAFT_1144 0.37 +3.7
1,163,099 - EX28DRAFT_1144 0.37 +0.0
1,163,127 + EX28DRAFT_1144 0.39 -3.5
1,163,169 + EX28DRAFT_1144 0.43 -0.6
1,163,169 + EX28DRAFT_1144 0.43 +0.1
1,163,169 + EX28DRAFT_1144 0.43 -0.1
1,163,169 + EX28DRAFT_1144 0.43 -0.6
1,163,169 + EX28DRAFT_1144 0.43 -0.2
1,163,170 - EX28DRAFT_1144 0.43 +0.6
1,163,171 + EX28DRAFT_1144 0.43 +0.3
1,163,171 + EX28DRAFT_1144 0.43 +0.1
1,163,212 + EX28DRAFT_1144 0.46 +0.0
1,163,213 - EX28DRAFT_1144 0.46 -0.4
1,163,222 + EX28DRAFT_1144 0.47 +0.2
1,163,411 + EX28DRAFT_1144 0.63 -1.1
1,163,461 + EX28DRAFT_1144 0.67 -0.3
1,163,462 - EX28DRAFT_1144 0.67 +0.4
1,163,474 + EX28DRAFT_1144 0.68 +0.2
1,163,487 - EX28DRAFT_1144 0.69 +1.0
1,163,541 + EX28DRAFT_1144 0.73 +1.0
1,163,542 - EX28DRAFT_1144 0.73 -0.8
1,163,631 + EX28DRAFT_1144 0.81 +0.9
1,163,631 + EX28DRAFT_1144 0.81 +0.1
1,163,632 - EX28DRAFT_1144 0.81 -0.3
1,163,697 + EX28DRAFT_1144 0.86 -0.4
1,163,698 - EX28DRAFT_1144 0.86 -0.2
1,163,698 - EX28DRAFT_1144 0.86 +0.4
1,163,698 - EX28DRAFT_1144 0.86 -0.5
1,163,719 - EX28DRAFT_1144 0.88 -0.3
1,163,783 + +0.7
1,163,789 - +0.4
1,163,832 + +1.4
1,163,832 + -0.1
1,163,833 - +0.3
1,163,859 - +0.0
1,163,859 - +0.5
1,163,862 + +0.4
1,163,862 + -1.3
1,163,862 + -0.8
1,163,862 + +0.3
1,163,862 + -0.2
1,163,863 - +0.4
1,163,863 - +0.5
1,164,155 - EX28DRAFT_1145 0.31 -1.8
1,164,164 + EX28DRAFT_1145 0.32 -1.0
1,164,230 + EX28DRAFT_1145 0.39 +0.0
1,164,297 - EX28DRAFT_1145 0.47 -1.4
1,164,297 - EX28DRAFT_1145 0.47 -0.1
1,164,350 + EX28DRAFT_1145 0.53 -0.4
1,164,350 + EX28DRAFT_1145 0.53 +0.1
1,164,370 + EX28DRAFT_1145 0.55 -0.2
1,164,439 + EX28DRAFT_1145 0.63 -0.1
1,164,439 + EX28DRAFT_1145 0.63 +0.1
1,164,440 - EX28DRAFT_1145 0.63 -0.3
1,164,479 + EX28DRAFT_1145 0.67 -0.4
1,164,479 + EX28DRAFT_1145 0.67 -0.3
1,164,480 - EX28DRAFT_1145 0.67 +1.0
1,164,541 + EX28DRAFT_1145 0.74 +0.3
1,164,542 - EX28DRAFT_1145 0.74 -0.6
1,164,623 + EX28DRAFT_1145 0.83 -0.4
1,164,630 - EX28DRAFT_1145 0.84 -0.6
1,164,630 - EX28DRAFT_1145 0.84 +0.1
1,164,650 + EX28DRAFT_1145 0.86 -0.1
1,164,805 - -1.1
1,164,827 + +0.5
1,164,867 - -0.3
1,164,909 + EX28DRAFT_1146 0.10 -0.7
1,164,909 + EX28DRAFT_1146 0.10 -0.2
1,165,019 + EX28DRAFT_1146 0.19 +0.8
1,165,019 + EX28DRAFT_1146 0.19 +0.1
1,165,019 + EX28DRAFT_1146 0.19 -0.6
1,165,020 - EX28DRAFT_1146 0.19 +0.1
1,165,059 + EX28DRAFT_1146 0.23 +0.7
1,165,150 + EX28DRAFT_1146 0.30 -0.3
1,165,151 - EX28DRAFT_1146 0.30 +0.4
1,165,151 - EX28DRAFT_1146 0.30 +0.7
1,165,290 - EX28DRAFT_1146 0.42 +0.0
1,165,404 + EX28DRAFT_1146 0.51 -0.4
1,165,405 - EX28DRAFT_1146 0.51 -0.2
1,165,522 - EX28DRAFT_1146 0.61 +0.2
1,165,637 - EX28DRAFT_1146 0.70 +1.1
1,165,673 + EX28DRAFT_1146 0.73 +0.3
1,165,673 + EX28DRAFT_1146 0.73 -3.2
1,165,673 + EX28DRAFT_1146 0.73 -0.3
1,165,674 - EX28DRAFT_1146 0.73 +0.1
1,165,674 - EX28DRAFT_1146 0.73 -0.7
1,165,761 + EX28DRAFT_1146 0.80 +1.7
1,165,761 + EX28DRAFT_1146 0.80 -0.0

Or see this region's nucleotide sequence