Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1099

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1098 and EX28DRAFT_1099 are separated by 143 nucleotidesEX28DRAFT_1099 and EX28DRAFT_1100 are separated by 130 nucleotidesEX28DRAFT_1100 and EX28DRAFT_1101 are separated by 43 nucleotides EX28DRAFT_1098: EX28DRAFT_1098 - ABC transporter substrate binding protein, KPN_01854 family, at 1,109,831 to 1,111,450 _1098 EX28DRAFT_1099: EX28DRAFT_1099 - NADH dehydrogenase, FAD-containing subunit, at 1,111,594 to 1,112,796 _1099 EX28DRAFT_1100: EX28DRAFT_1100 - transcriptional regulator, BadM/Rrf2 family, at 1,112,927 to 1,113,433 _1100 EX28DRAFT_1101: EX28DRAFT_1101 - Zn-dependent alcohol dehydrogenases, at 1,113,477 to 1,114,487 _1101 Position (kb) 1111 1112 1113Strain fitness (log2 ratio) -3 -2 -1 0 1at 1110.630 kb on + strand, within EX28DRAFT_1098at 1110.638 kb on - strand, within EX28DRAFT_1098at 1110.638 kb on - strand, within EX28DRAFT_1098at 1110.640 kb on - strand, within EX28DRAFT_1098at 1110.653 kb on - strand, within EX28DRAFT_1098at 1110.670 kb on - strand, within EX28DRAFT_1098at 1110.863 kb on + strand, within EX28DRAFT_1098at 1110.923 kb on - strand, within EX28DRAFT_1098at 1111.000 kb on - strand, within EX28DRAFT_1098at 1111.041 kb on + strand, within EX28DRAFT_1098at 1111.041 kb on + strand, within EX28DRAFT_1098at 1111.042 kb on - strand, within EX28DRAFT_1098at 1111.045 kb on + strand, within EX28DRAFT_1098at 1111.045 kb on + strand, within EX28DRAFT_1098at 1111.046 kb on - strand, within EX28DRAFT_1098at 1111.046 kb on - strand, within EX28DRAFT_1098at 1111.046 kb on - strand, within EX28DRAFT_1098at 1111.081 kb on + strand, within EX28DRAFT_1098at 1111.095 kb on + strand, within EX28DRAFT_1098at 1111.096 kb on - strand, within EX28DRAFT_1098at 1111.179 kb on + strand, within EX28DRAFT_1098at 1111.180 kb on - strand, within EX28DRAFT_1098at 1111.467 kb on - strandat 1111.528 kb on + strandat 1111.529 kb on - strandat 1111.529 kb on - strandat 1111.741 kb on - strand, within EX28DRAFT_1099at 1111.776 kb on + strand, within EX28DRAFT_1099at 1111.777 kb on - strand, within EX28DRAFT_1099at 1111.781 kb on + strand, within EX28DRAFT_1099at 1111.781 kb on + strand, within EX28DRAFT_1099at 1111.782 kb on - strand, within EX28DRAFT_1099at 1111.782 kb on - strand, within EX28DRAFT_1099at 1111.782 kb on - strand, within EX28DRAFT_1099at 1111.937 kb on + strand, within EX28DRAFT_1099at 1111.937 kb on + strand, within EX28DRAFT_1099at 1111.937 kb on + strand, within EX28DRAFT_1099at 1111.937 kb on + strand, within EX28DRAFT_1099at 1111.937 kb on + strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.938 kb on - strand, within EX28DRAFT_1099at 1111.980 kb on + strand, within EX28DRAFT_1099at 1111.980 kb on + strand, within EX28DRAFT_1099at 1112.073 kb on + strand, within EX28DRAFT_1099at 1112.131 kb on - strand, within EX28DRAFT_1099at 1112.482 kb on + strand, within EX28DRAFT_1099at 1112.556 kb on + strand, within EX28DRAFT_1099at 1112.697 kb on + strandat 1112.844 kb on + strandat 1112.954 kb on + strandat 1112.995 kb on + strand, within EX28DRAFT_1100at 1113.054 kb on - strand, within EX28DRAFT_1100at 1113.168 kb on + strand, within EX28DRAFT_1100at 1113.261 kb on + strand, within EX28DRAFT_1100at 1113.261 kb on + strand, within EX28DRAFT_1100at 1113.337 kb on + strand, within EX28DRAFT_1100at 1113.338 kb on - strand, within EX28DRAFT_1100at 1113.437 kb on + strandat 1113.470 kb on + strandat 1113.471 kb on - strandat 1113.587 kb on + strand, within EX28DRAFT_1101

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,110,630 + EX28DRAFT_1098 0.49 +0.3
1,110,638 - EX28DRAFT_1098 0.50 +0.0
1,110,638 - EX28DRAFT_1098 0.50 -2.8
1,110,640 - EX28DRAFT_1098 0.50 +0.9
1,110,653 - EX28DRAFT_1098 0.51 +0.1
1,110,670 - EX28DRAFT_1098 0.52 -1.2
1,110,863 + EX28DRAFT_1098 0.64 -1.1
1,110,923 - EX28DRAFT_1098 0.67 +1.1
1,111,000 - EX28DRAFT_1098 0.72 +0.5
1,111,041 + EX28DRAFT_1098 0.75 -1.5
1,111,041 + EX28DRAFT_1098 0.75 -0.1
1,111,042 - EX28DRAFT_1098 0.75 -0.8
1,111,045 + EX28DRAFT_1098 0.75 +0.0
1,111,045 + EX28DRAFT_1098 0.75 +0.3
1,111,046 - EX28DRAFT_1098 0.75 -0.1
1,111,046 - EX28DRAFT_1098 0.75 -1.0
1,111,046 - EX28DRAFT_1098 0.75 +0.5
1,111,081 + EX28DRAFT_1098 0.77 +0.7
1,111,095 + EX28DRAFT_1098 0.78 -0.2
1,111,096 - EX28DRAFT_1098 0.78 +0.4
1,111,179 + EX28DRAFT_1098 0.83 -0.0
1,111,180 - EX28DRAFT_1098 0.83 -0.1
1,111,467 - -0.5
1,111,528 + -0.4
1,111,529 - +0.3
1,111,529 - -0.8
1,111,741 - EX28DRAFT_1099 0.12 -0.1
1,111,776 + EX28DRAFT_1099 0.15 +0.6
1,111,777 - EX28DRAFT_1099 0.15 -0.2
1,111,781 + EX28DRAFT_1099 0.16 +0.9
1,111,781 + EX28DRAFT_1099 0.16 +0.0
1,111,782 - EX28DRAFT_1099 0.16 -0.1
1,111,782 - EX28DRAFT_1099 0.16 -0.5
1,111,782 - EX28DRAFT_1099 0.16 +1.3
1,111,937 + EX28DRAFT_1099 0.29 -0.3
1,111,937 + EX28DRAFT_1099 0.29 +0.8
1,111,937 + EX28DRAFT_1099 0.29 +0.1
1,111,937 + EX28DRAFT_1099 0.29 +1.7
1,111,937 + EX28DRAFT_1099 0.29 +1.3
1,111,938 - EX28DRAFT_1099 0.29 +0.4
1,111,938 - EX28DRAFT_1099 0.29 +0.3
1,111,938 - EX28DRAFT_1099 0.29 -0.6
1,111,938 - EX28DRAFT_1099 0.29 -0.1
1,111,938 - EX28DRAFT_1099 0.29 +1.7
1,111,938 - EX28DRAFT_1099 0.29 -1.0
1,111,938 - EX28DRAFT_1099 0.29 -0.1
1,111,938 - EX28DRAFT_1099 0.29 +0.3
1,111,980 + EX28DRAFT_1099 0.32 +0.7
1,111,980 + EX28DRAFT_1099 0.32 -0.1
1,112,073 + EX28DRAFT_1099 0.40 -1.2
1,112,131 - EX28DRAFT_1099 0.45 +0.5
1,112,482 + EX28DRAFT_1099 0.74 +1.2
1,112,556 + EX28DRAFT_1099 0.80 -0.1
1,112,697 + -0.1
1,112,844 + -0.0
1,112,954 + -0.6
1,112,995 + EX28DRAFT_1100 0.13 +0.4
1,113,054 - EX28DRAFT_1100 0.25 -0.7
1,113,168 + EX28DRAFT_1100 0.48 -0.7
1,113,261 + EX28DRAFT_1100 0.66 +0.2
1,113,261 + EX28DRAFT_1100 0.66 +0.3
1,113,337 + EX28DRAFT_1100 0.81 -0.8
1,113,338 - EX28DRAFT_1100 0.81 +0.7
1,113,437 + -0.5
1,113,470 + +1.4
1,113,471 - +0.4
1,113,587 + EX28DRAFT_1101 0.11 +0.0

Or see this region's nucleotide sequence