Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1068 and EX28DRAFT_1069 are separated by 68 nucleotides EX28DRAFT_1069 and EX28DRAFT_1070 are separated by 116 nucleotides
EX28DRAFT_1068: EX28DRAFT_1068 - Arylamine N-acetyltransferase, at 1,079,772 to 1,080,617
_1068
EX28DRAFT_1069: EX28DRAFT_1069 - transcriptional regulator, TetR family, at 1,080,686 to 1,081,279
_1069
EX28DRAFT_1070: EX28DRAFT_1070 - Arabinose efflux permease, at 1,081,396 to 1,082,883
_1070
Position (kb)
1080
1081
1082 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1079.690 kb on + strand at 1079.707 kb on + strand at 1079.736 kb on + strand at 1079.739 kb on - strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.860 kb on + strand, within EX28DRAFT_1068 at 1079.860 kb on + strand, within EX28DRAFT_1068 at 1079.860 kb on + strand, within EX28DRAFT_1068 at 1079.861 kb on - strand, within EX28DRAFT_1068 at 1079.861 kb on - strand, within EX28DRAFT_1068 at 1079.891 kb on + strand, within EX28DRAFT_1068 at 1079.891 kb on + strand, within EX28DRAFT_1068 at 1079.892 kb on - strand, within EX28DRAFT_1068 at 1079.974 kb on - strand, within EX28DRAFT_1068 at 1080.216 kb on + strand, within EX28DRAFT_1068 at 1080.309 kb on + strand, within EX28DRAFT_1068 at 1080.309 kb on + strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.496 kb on + strand, within EX28DRAFT_1068 at 1080.497 kb on - strand, within EX28DRAFT_1068 at 1080.499 kb on - strand, within EX28DRAFT_1068 at 1080.499 kb on - strand, within EX28DRAFT_1068 at 1080.499 kb on - strand, within EX28DRAFT_1068 at 1080.505 kb on + strand, within EX28DRAFT_1068 at 1080.651 kb on + strand at 1080.652 kb on - strand at 1080.652 kb on - strand at 1080.776 kb on + strand, within EX28DRAFT_1069 at 1080.783 kb on + strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.813 kb on - strand, within EX28DRAFT_1069 at 1080.917 kb on - strand, within EX28DRAFT_1069 at 1080.991 kb on - strand, within EX28DRAFT_1069 at 1081.098 kb on - strand, within EX28DRAFT_1069 at 1081.133 kb on - strand, within EX28DRAFT_1069 at 1081.238 kb on + strand at 1081.238 kb on + strand at 1081.331 kb on - strand at 1081.331 kb on - strand at 1081.331 kb on - strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.439 kb on - strand at 1081.439 kb on - strand at 1081.439 kb on - strand at 1081.439 kb on - strand at 1081.539 kb on + strand at 1081.728 kb on + strand, within EX28DRAFT_1070 at 1081.783 kb on - strand, within EX28DRAFT_1070 at 1081.889 kb on + strand, within EX28DRAFT_1070 at 1081.978 kb on - strand, within EX28DRAFT_1070 at 1081.993 kb on - strand, within EX28DRAFT_1070 at 1082.024 kb on - strand, within EX28DRAFT_1070 at 1082.107 kb on - strand, within EX28DRAFT_1070 at 1082.271 kb on + strand, within EX28DRAFT_1070 at 1082.272 kb on - strand, within EX28DRAFT_1070
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,079,690 + +0.2 1,079,707 + +1.1 1,079,736 + -0.2 1,079,739 - -0.2 1,079,771 + -0.0 1,079,771 + -0.1 1,079,771 + +0.3 1,079,771 + -0.1 1,079,771 + -0.8 1,079,771 + +0.5 1,079,771 + -0.2 1,079,771 + -0.2 1,079,772 - +0.3 1,079,772 - -0.3 1,079,772 - -0.9 1,079,772 - -0.4 1,079,860 + EX28DRAFT_1068 0.10 -0.3 1,079,860 + EX28DRAFT_1068 0.10 -1.1 1,079,860 + EX28DRAFT_1068 0.10 -0.5 1,079,861 - EX28DRAFT_1068 0.11 -0.1 1,079,861 - EX28DRAFT_1068 0.11 +0.3 1,079,891 + EX28DRAFT_1068 0.14 +0.2 1,079,891 + EX28DRAFT_1068 0.14 +0.3 1,079,892 - EX28DRAFT_1068 0.14 -1.6 1,079,974 - EX28DRAFT_1068 0.24 -0.4 1,080,216 + EX28DRAFT_1068 0.52 -0.2 1,080,309 + EX28DRAFT_1068 0.63 +0.3 1,080,309 + EX28DRAFT_1068 0.63 -0.7 1,080,461 - EX28DRAFT_1068 0.81 +0.4 1,080,461 - EX28DRAFT_1068 0.81 +0.5 1,080,461 - EX28DRAFT_1068 0.81 +0.9 1,080,461 - EX28DRAFT_1068 0.81 +0.0 1,080,496 + EX28DRAFT_1068 0.86 +1.6 1,080,497 - EX28DRAFT_1068 0.86 -0.2 1,080,499 - EX28DRAFT_1068 0.86 +0.2 1,080,499 - EX28DRAFT_1068 0.86 -0.2 1,080,499 - EX28DRAFT_1068 0.86 -0.3 1,080,505 + EX28DRAFT_1068 0.87 -0.7 1,080,651 + -0.8 1,080,652 - -0.3 1,080,652 - -0.4 1,080,776 + EX28DRAFT_1069 0.15 -1.3 1,080,783 + EX28DRAFT_1069 0.16 -2.6 1,080,784 - EX28DRAFT_1069 0.16 +0.3 1,080,784 - EX28DRAFT_1069 0.16 +0.5 1,080,784 - EX28DRAFT_1069 0.16 -0.7 1,080,784 - EX28DRAFT_1069 0.16 -0.5 1,080,784 - EX28DRAFT_1069 0.16 -3.3 1,080,813 - EX28DRAFT_1069 0.21 -0.6 1,080,917 - EX28DRAFT_1069 0.39 -0.4 1,080,991 - EX28DRAFT_1069 0.51 +0.4 1,081,098 - EX28DRAFT_1069 0.69 +0.8 1,081,133 - EX28DRAFT_1069 0.75 -2.6 1,081,238 + -0.8 1,081,238 + -0.5 1,081,331 - -1.8 1,081,331 - -0.2 1,081,331 - +1.0 1,081,438 + -1.1 1,081,438 + -0.4 1,081,438 + -0.2 1,081,438 + +0.6 1,081,438 + +1.5 1,081,439 - +0.6 1,081,439 - -0.5 1,081,439 - +1.2 1,081,439 - +0.1 1,081,539 + -0.0 1,081,728 + EX28DRAFT_1070 0.22 +0.4 1,081,783 - EX28DRAFT_1070 0.26 +1.1 1,081,889 + EX28DRAFT_1070 0.33 -0.4 1,081,978 - EX28DRAFT_1070 0.39 +0.3 1,081,993 - EX28DRAFT_1070 0.40 -0.4 1,082,024 - EX28DRAFT_1070 0.42 -0.1 1,082,107 - EX28DRAFT_1070 0.48 +0.5 1,082,271 + EX28DRAFT_1070 0.59 -0.1 1,082,272 - EX28DRAFT_1070 0.59 +0.5
Or see this region's nucleotide sequence