Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1033 and EX28DRAFT_1034 overlap by 4 nucleotides EX28DRAFT_1034 and EX28DRAFT_1035 are separated by 4 nucleotides
EX28DRAFT_1033: EX28DRAFT_1033 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,039,889 to 1,042,066
_1033
EX28DRAFT_1034: EX28DRAFT_1034 - Uncharacterized protein conserved in bacteria, putative virulence factor, at 1,042,063 to 1,045,044
_1034
EX28DRAFT_1035: EX28DRAFT_1035 - hypothetical protein, at 1,045,049 to 1,046,389
_1035
Position (kb)
1042
1043
1044
1045
1046 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1041.082 kb on + strand, within EX28DRAFT_1033 at 1041.089 kb on - strand, within EX28DRAFT_1033 at 1041.089 kb on - strand, within EX28DRAFT_1033 at 1041.239 kb on + strand, within EX28DRAFT_1033 at 1041.240 kb on - strand, within EX28DRAFT_1033 at 1041.614 kb on - strand, within EX28DRAFT_1033 at 1041.656 kb on - strand, within EX28DRAFT_1033 at 1041.792 kb on + strand, within EX28DRAFT_1033 at 1042.034 kb on + strand at 1042.073 kb on + strand at 1042.074 kb on - strand at 1042.076 kb on - strand at 1042.076 kb on - strand at 1042.132 kb on - strand at 1042.313 kb on + strand at 1042.313 kb on + strand at 1042.314 kb on - strand at 1042.509 kb on - strand, within EX28DRAFT_1034 at 1042.655 kb on + strand, within EX28DRAFT_1034 at 1042.816 kb on - strand, within EX28DRAFT_1034 at 1042.935 kb on - strand, within EX28DRAFT_1034 at 1042.943 kb on - strand, within EX28DRAFT_1034 at 1043.136 kb on + strand, within EX28DRAFT_1034 at 1043.137 kb on - strand, within EX28DRAFT_1034 at 1043.199 kb on - strand, within EX28DRAFT_1034 at 1043.471 kb on + strand, within EX28DRAFT_1034 at 1043.472 kb on - strand, within EX28DRAFT_1034 at 1043.472 kb on - strand, within EX28DRAFT_1034 at 1043.544 kb on + strand, within EX28DRAFT_1034 at 1043.544 kb on + strand, within EX28DRAFT_1034 at 1043.813 kb on + strand, within EX28DRAFT_1034 at 1043.813 kb on + strand, within EX28DRAFT_1034 at 1044.265 kb on - strand, within EX28DRAFT_1034 at 1044.337 kb on - strand, within EX28DRAFT_1034 at 1044.476 kb on + strand, within EX28DRAFT_1034 at 1044.660 kb on + strand, within EX28DRAFT_1034 at 1044.660 kb on + strand, within EX28DRAFT_1034 at 1044.661 kb on - strand, within EX28DRAFT_1034 at 1044.867 kb on + strand at 1044.867 kb on + strand at 1044.869 kb on + strand at 1044.929 kb on - strand at 1045.002 kb on + strand at 1045.021 kb on - strand at 1045.022 kb on + strand at 1045.022 kb on + strand at 1045.044 kb on + strand at 1045.045 kb on - strand at 1045.045 kb on - strand at 1045.138 kb on + strand at 1045.201 kb on + strand, within EX28DRAFT_1035 at 1045.253 kb on + strand, within EX28DRAFT_1035 at 1045.253 kb on + strand, within EX28DRAFT_1035 at 1045.254 kb on - strand, within EX28DRAFT_1035 at 1045.291 kb on + strand, within EX28DRAFT_1035 at 1045.292 kb on - strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.770 kb on + strand, within EX28DRAFT_1035 at 1045.771 kb on - strand, within EX28DRAFT_1035
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,041,082 + EX28DRAFT_1033 0.55 -0.9 1,041,089 - EX28DRAFT_1033 0.55 +0.0 1,041,089 - EX28DRAFT_1033 0.55 +0.6 1,041,239 + EX28DRAFT_1033 0.62 +0.7 1,041,240 - EX28DRAFT_1033 0.62 -1.6 1,041,614 - EX28DRAFT_1033 0.79 +0.2 1,041,656 - EX28DRAFT_1033 0.81 +0.5 1,041,792 + EX28DRAFT_1033 0.87 -0.8 1,042,034 + +0.2 1,042,073 + -0.3 1,042,074 - -0.4 1,042,076 - -0.0 1,042,076 - -0.3 1,042,132 - +0.2 1,042,313 + -0.2 1,042,313 + +1.7 1,042,314 - -0.2 1,042,509 - EX28DRAFT_1034 0.15 +0.1 1,042,655 + EX28DRAFT_1034 0.20 -0.2 1,042,816 - EX28DRAFT_1034 0.25 -0.5 1,042,935 - EX28DRAFT_1034 0.29 +0.3 1,042,943 - EX28DRAFT_1034 0.30 -0.3 1,043,136 + EX28DRAFT_1034 0.36 +0.2 1,043,137 - EX28DRAFT_1034 0.36 +0.2 1,043,199 - EX28DRAFT_1034 0.38 -0.2 1,043,471 + EX28DRAFT_1034 0.47 -1.0 1,043,472 - EX28DRAFT_1034 0.47 +0.5 1,043,472 - EX28DRAFT_1034 0.47 -0.3 1,043,544 + EX28DRAFT_1034 0.50 -0.3 1,043,544 + EX28DRAFT_1034 0.50 +0.8 1,043,813 + EX28DRAFT_1034 0.59 +0.0 1,043,813 + EX28DRAFT_1034 0.59 -0.2 1,044,265 - EX28DRAFT_1034 0.74 +0.0 1,044,337 - EX28DRAFT_1034 0.76 +0.7 1,044,476 + EX28DRAFT_1034 0.81 +1.5 1,044,660 + EX28DRAFT_1034 0.87 -0.2 1,044,660 + EX28DRAFT_1034 0.87 +0.4 1,044,661 - EX28DRAFT_1034 0.87 +0.4 1,044,867 + -1.6 1,044,867 + -0.7 1,044,869 + +0.2 1,044,929 - -0.0 1,045,002 + +0.4 1,045,021 - -0.3 1,045,022 + -0.0 1,045,022 + +0.4 1,045,044 + +0.1 1,045,045 - -2.3 1,045,045 - +0.1 1,045,138 + +2.1 1,045,201 + EX28DRAFT_1035 0.11 +0.3 1,045,253 + EX28DRAFT_1035 0.15 -0.3 1,045,253 + EX28DRAFT_1035 0.15 -0.9 1,045,254 - EX28DRAFT_1035 0.15 -2.4 1,045,291 + EX28DRAFT_1035 0.18 +1.3 1,045,292 - EX28DRAFT_1035 0.18 -1.2 1,045,770 + EX28DRAFT_1035 0.54 +1.2 1,045,770 + EX28DRAFT_1035 0.54 -0.4 1,045,770 + EX28DRAFT_1035 0.54 +0.1 1,045,770 + EX28DRAFT_1035 0.54 +1.0 1,045,770 + EX28DRAFT_1035 0.54 -0.0 1,045,771 - EX28DRAFT_1035 0.54 -0.7
Or see this region's nucleotide sequence