Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1012 and EX28DRAFT_1013 are separated by 143 nucleotides EX28DRAFT_1013 and EX28DRAFT_1014 are separated by 262 nucleotides EX28DRAFT_1014 and EX28DRAFT_1015 are separated by 90 nucleotides EX28DRAFT_1015 and EX28DRAFT_1016 are separated by 3 nucleotides
EX28DRAFT_1012: EX28DRAFT_1012 - Predicted membrane protein, at 1,018,765 to 1,019,109
_1012
EX28DRAFT_1013: EX28DRAFT_1013 - hypothetical protein, at 1,019,253 to 1,019,702
_1013
EX28DRAFT_1014: EX28DRAFT_1014 - O-methyltransferase, at 1,019,965 to 1,020,996
_1014
EX28DRAFT_1015: EX28DRAFT_1015 - hypothetical protein, at 1,021,087 to 1,021,284
_1015
EX28DRAFT_1016: EX28DRAFT_1016 - Uncharacterized conserved protein, at 1,021,288 to 1,021,710
_1016
Position (kb)
1019
1020
1021 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1019.005 kb on - strand, within EX28DRAFT_1012 at 1019.033 kb on - strand, within EX28DRAFT_1012 at 1019.080 kb on + strand at 1019.140 kb on + strand at 1019.140 kb on + strand at 1019.183 kb on + strand at 1019.224 kb on - strand at 1019.334 kb on - strand, within EX28DRAFT_1013 at 1019.343 kb on + strand, within EX28DRAFT_1013 at 1019.364 kb on + strand, within EX28DRAFT_1013 at 1019.451 kb on + strand, within EX28DRAFT_1013 at 1019.453 kb on + strand, within EX28DRAFT_1013 at 1019.453 kb on + strand, within EX28DRAFT_1013 at 1019.523 kb on + strand, within EX28DRAFT_1013 at 1019.680 kb on - strand at 1019.700 kb on + strand at 1019.720 kb on + strand at 1019.827 kb on + strand at 1019.827 kb on + strand at 1019.827 kb on + strand at 1019.838 kb on + strand at 1019.866 kb on + strand at 1019.866 kb on + strand at 1019.908 kb on - strand at 1019.908 kb on - strand at 1019.946 kb on + strand at 1019.976 kb on + strand at 1019.976 kb on + strand at 1019.979 kb on + strand at 1019.980 kb on - strand at 1019.991 kb on - strand at 1020.075 kb on - strand, within EX28DRAFT_1014 at 1020.174 kb on - strand, within EX28DRAFT_1014 at 1020.336 kb on - strand, within EX28DRAFT_1014 at 1020.336 kb on - strand, within EX28DRAFT_1014 at 1020.447 kb on + strand, within EX28DRAFT_1014 at 1020.447 kb on + strand, within EX28DRAFT_1014 at 1020.481 kb on - strand, within EX28DRAFT_1014 at 1020.705 kb on + strand, within EX28DRAFT_1014 at 1020.706 kb on - strand, within EX28DRAFT_1014 at 1020.709 kb on + strand, within EX28DRAFT_1014 at 1020.709 kb on + strand, within EX28DRAFT_1014 at 1020.792 kb on - strand, within EX28DRAFT_1014 at 1020.964 kb on + strand at 1020.986 kb on + strand at 1020.987 kb on - strand at 1020.987 kb on - strand at 1021.015 kb on - strand at 1021.047 kb on + strand at 1021.048 kb on - strand at 1021.072 kb on - strand at 1021.086 kb on + strand at 1021.185 kb on + strand, within EX28DRAFT_1015 at 1021.232 kb on + strand, within EX28DRAFT_1015 at 1021.282 kb on + strand at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.459 kb on - strand, within EX28DRAFT_1016 at 1021.731 kb on + strand at 1021.731 kb on + strand at 1021.745 kb on + strand at 1021.745 kb on + strand at 1021.746 kb on - strand at 1021.746 kb on - strand at 1021.778 kb on + strand at 1021.865 kb on - strand at 1021.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 1,019,005 - EX28DRAFT_1012 0.70 -1.6 1,019,033 - EX28DRAFT_1012 0.78 +0.4 1,019,080 + -0.4 1,019,140 + +0.4 1,019,140 + -1.6 1,019,183 + +0.9 1,019,224 - -0.2 1,019,334 - EX28DRAFT_1013 0.18 +0.7 1,019,343 + EX28DRAFT_1013 0.20 -0.4 1,019,364 + EX28DRAFT_1013 0.25 +0.4 1,019,451 + EX28DRAFT_1013 0.44 +0.5 1,019,453 + EX28DRAFT_1013 0.44 +0.4 1,019,453 + EX28DRAFT_1013 0.44 +0.6 1,019,523 + EX28DRAFT_1013 0.60 -0.9 1,019,680 - -0.3 1,019,700 + +0.7 1,019,720 + +0.8 1,019,827 + -0.0 1,019,827 + -0.1 1,019,827 + -0.6 1,019,838 + +0.6 1,019,866 + -0.4 1,019,866 + -0.2 1,019,908 - +0.8 1,019,908 - +0.0 1,019,946 + +0.9 1,019,976 + +0.5 1,019,976 + -0.6 1,019,979 + +0.8 1,019,980 - -3.2 1,019,991 - -0.1 1,020,075 - EX28DRAFT_1014 0.11 -1.1 1,020,174 - EX28DRAFT_1014 0.20 -0.7 1,020,336 - EX28DRAFT_1014 0.36 +0.4 1,020,336 - EX28DRAFT_1014 0.36 +0.4 1,020,447 + EX28DRAFT_1014 0.47 -0.3 1,020,447 + EX28DRAFT_1014 0.47 +1.8 1,020,481 - EX28DRAFT_1014 0.50 -0.3 1,020,705 + EX28DRAFT_1014 0.72 +0.6 1,020,706 - EX28DRAFT_1014 0.72 +1.8 1,020,709 + EX28DRAFT_1014 0.72 +0.5 1,020,709 + EX28DRAFT_1014 0.72 -0.1 1,020,792 - EX28DRAFT_1014 0.80 -0.3 1,020,964 + -0.7 1,020,986 + -0.6 1,020,987 - +1.2 1,020,987 - +0.1 1,021,015 - +0.5 1,021,047 + -1.6 1,021,048 - +0.6 1,021,072 - +0.7 1,021,086 + -0.1 1,021,185 + EX28DRAFT_1015 0.49 -0.9 1,021,232 + EX28DRAFT_1015 0.73 +0.2 1,021,282 + +0.1 1,021,458 + EX28DRAFT_1016 0.40 +0.0 1,021,458 + EX28DRAFT_1016 0.40 +0.3 1,021,459 - EX28DRAFT_1016 0.40 -0.6 1,021,731 + +0.0 1,021,731 + -0.1 1,021,745 + -1.1 1,021,745 + -0.2 1,021,746 - -0.7 1,021,746 - +1.2 1,021,778 + +1.0 1,021,865 - +0.2 1,021,941 - +0.5
Or see this region's nucleotide sequence