Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0998

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0997 and EX28DRAFT_0998 overlap by 10 nucleotidesEX28DRAFT_0998 and EX28DRAFT_0999 are separated by 185 nucleotides EX28DRAFT_0997: EX28DRAFT_0997 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,000,481 to 1,001,446 _0997 EX28DRAFT_0998: EX28DRAFT_0998 - Predicted carboxypeptidase, at 1,001,437 to 1,002,150 _0998 EX28DRAFT_0999: EX28DRAFT_0999 - ABC-type oligopeptide transport system, periplasmic component, at 1,002,336 to 1,003,952 _0999 Position (kb) 1001 1002 1003Strain fitness (log2 ratio) -3 -2 -1 0 1at 1000.500 kb on - strandat 1000.523 kb on - strandat 1000.615 kb on + strand, within EX28DRAFT_0997at 1000.616 kb on - strand, within EX28DRAFT_0997at 1000.664 kb on - strand, within EX28DRAFT_0997at 1001.479 kb on + strandat 1001.712 kb on + strand, within EX28DRAFT_0998at 1001.713 kb on - strand, within EX28DRAFT_0998at 1001.713 kb on - strand, within EX28DRAFT_0998at 1001.854 kb on - strand, within EX28DRAFT_0998at 1002.142 kb on - strandat 1002.292 kb on - strandat 1002.292 kb on - strandat 1002.335 kb on + strandat 1002.335 kb on + strandat 1002.336 kb on - strandat 1002.336 kb on - strandat 1002.372 kb on + strandat 1002.390 kb on - strandat 1002.458 kb on + strandat 1002.458 kb on + strandat 1002.462 kb on - strandat 1002.462 kb on - strandat 1002.572 kb on + strand, within EX28DRAFT_0999at 1002.801 kb on - strand, within EX28DRAFT_0999at 1002.897 kb on + strand, within EX28DRAFT_0999at 1003.100 kb on + strand, within EX28DRAFT_0999at 1003.122 kb on - strand, within EX28DRAFT_0999

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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1,000,500 - -0.8
1,000,523 - -0.3
1,000,615 + EX28DRAFT_0997 0.14 -0.4
1,000,616 - EX28DRAFT_0997 0.14 -0.5
1,000,664 - EX28DRAFT_0997 0.19 +0.2
1,001,479 + -0.0
1,001,712 + EX28DRAFT_0998 0.39 -2.5
1,001,713 - EX28DRAFT_0998 0.39 +0.2
1,001,713 - EX28DRAFT_0998 0.39 -0.2
1,001,854 - EX28DRAFT_0998 0.58 +0.1
1,002,142 - -0.2
1,002,292 - +0.6
1,002,292 - +1.2
1,002,335 + +0.2
1,002,335 + -0.7
1,002,336 - -0.1
1,002,336 - -2.8
1,002,372 + +0.4
1,002,390 - -0.7
1,002,458 + -0.0
1,002,458 + -0.3
1,002,462 - -0.2
1,002,462 - -0.9
1,002,572 + EX28DRAFT_0999 0.15 +0.3
1,002,801 - EX28DRAFT_0999 0.29 -1.2
1,002,897 + EX28DRAFT_0999 0.35 -0.4
1,003,100 + EX28DRAFT_0999 0.47 +1.2
1,003,122 - EX28DRAFT_0999 0.49 +0.3

Or see this region's nucleotide sequence