Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0995 and EX28DRAFT_0996 are separated by 275 nucleotides EX28DRAFT_0996 and EX28DRAFT_0997 are separated by 107 nucleotides EX28DRAFT_0997 and EX28DRAFT_0998 overlap by 10 nucleotides EX28DRAFT_0998 and EX28DRAFT_0999 are separated by 185 nucleotides
EX28DRAFT_0995: EX28DRAFT_0995 - Domain of unknown function (DUF4432), at 998,383 to 999,591
_0995
EX28DRAFT_0996: EX28DRAFT_0996 - Peroxiredoxin, at 999,867 to 1,000,373
_0996
EX28DRAFT_0997: EX28DRAFT_0997 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,000,481 to 1,001,446
_0997
EX28DRAFT_0998: EX28DRAFT_0998 - Predicted carboxypeptidase, at 1,001,437 to 1,002,150
_0998
EX28DRAFT_0999: EX28DRAFT_0999 - ABC-type oligopeptide transport system, periplasmic component, at 1,002,336 to 1,003,952
_0999
Position (kb)
1000
1001
1002 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 999.593 kb on + strand at 999.847 kb on + strand at 999.849 kb on + strand at 999.850 kb on - strand at 999.865 kb on + strand at 1000.064 kb on + strand, within EX28DRAFT_0996 at 1000.065 kb on - strand, within EX28DRAFT_0996 at 1000.175 kb on + strand, within EX28DRAFT_0996 at 1000.289 kb on + strand, within EX28DRAFT_0996 at 1000.373 kb on + strand at 1000.373 kb on + strand at 1000.374 kb on - strand at 1000.374 kb on - strand at 1000.374 kb on - strand at 1000.374 kb on - strand at 1000.377 kb on + strand at 1000.378 kb on - strand at 1000.390 kb on - strand at 1000.393 kb on + strand at 1000.393 kb on + strand at 1000.394 kb on - strand at 1000.394 kb on - strand at 1000.395 kb on + strand at 1000.396 kb on - strand at 1000.396 kb on - strand at 1000.396 kb on - strand at 1000.416 kb on + strand at 1000.416 kb on + strand at 1000.417 kb on - strand at 1000.500 kb on - strand at 1000.523 kb on - strand at 1000.615 kb on + strand, within EX28DRAFT_0997 at 1000.616 kb on - strand, within EX28DRAFT_0997 at 1000.664 kb on - strand, within EX28DRAFT_0997 at 1001.479 kb on + strand at 1001.712 kb on + strand, within EX28DRAFT_0998 at 1001.713 kb on - strand, within EX28DRAFT_0998 at 1001.713 kb on - strand, within EX28DRAFT_0998 at 1001.854 kb on - strand, within EX28DRAFT_0998 at 1002.142 kb on - strand at 1002.292 kb on - strand at 1002.292 kb on - strand at 1002.335 kb on + strand at 1002.335 kb on + strand at 1002.336 kb on - strand at 1002.336 kb on - strand at 1002.372 kb on + strand at 1002.390 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 999,593 + -0.3 999,847 + +2.2 999,849 + -0.3 999,850 - -0.2 999,865 + -0.3 1,000,064 + EX28DRAFT_0996 0.39 -0.9 1,000,065 - EX28DRAFT_0996 0.39 -0.3 1,000,175 + EX28DRAFT_0996 0.61 -0.2 1,000,289 + EX28DRAFT_0996 0.83 -0.4 1,000,373 + -0.4 1,000,373 + +0.0 1,000,374 - -1.6 1,000,374 - -0.2 1,000,374 - +0.5 1,000,374 - +0.2 1,000,377 + +0.2 1,000,378 - -1.0 1,000,390 - -0.4 1,000,393 + +0.4 1,000,393 + -0.6 1,000,394 - +0.7 1,000,394 - -0.7 1,000,395 + +0.6 1,000,396 - -0.6 1,000,396 - -0.2 1,000,396 - -0.1 1,000,416 + -0.2 1,000,416 + -0.8 1,000,417 - +0.5 1,000,500 - -0.8 1,000,523 - -0.3 1,000,615 + EX28DRAFT_0997 0.14 -0.4 1,000,616 - EX28DRAFT_0997 0.14 -0.5 1,000,664 - EX28DRAFT_0997 0.19 +0.2 1,001,479 + -0.0 1,001,712 + EX28DRAFT_0998 0.39 -2.5 1,001,713 - EX28DRAFT_0998 0.39 +0.2 1,001,713 - EX28DRAFT_0998 0.39 -0.2 1,001,854 - EX28DRAFT_0998 0.58 +0.1 1,002,142 - -0.2 1,002,292 - +0.6 1,002,292 - +1.2 1,002,335 + +0.2 1,002,335 + -0.7 1,002,336 - -0.1 1,002,336 - -2.8 1,002,372 + +0.4 1,002,390 - -0.7
Or see this region's nucleotide sequence