Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0997

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0995 and EX28DRAFT_0996 are separated by 275 nucleotidesEX28DRAFT_0996 and EX28DRAFT_0997 are separated by 107 nucleotidesEX28DRAFT_0997 and EX28DRAFT_0998 overlap by 10 nucleotidesEX28DRAFT_0998 and EX28DRAFT_0999 are separated by 185 nucleotides EX28DRAFT_0995: EX28DRAFT_0995 - Domain of unknown function (DUF4432), at 998,383 to 999,591 _0995 EX28DRAFT_0996: EX28DRAFT_0996 - Peroxiredoxin, at 999,867 to 1,000,373 _0996 EX28DRAFT_0997: EX28DRAFT_0997 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 1,000,481 to 1,001,446 _0997 EX28DRAFT_0998: EX28DRAFT_0998 - Predicted carboxypeptidase, at 1,001,437 to 1,002,150 _0998 EX28DRAFT_0999: EX28DRAFT_0999 - ABC-type oligopeptide transport system, periplasmic component, at 1,002,336 to 1,003,952 _0999 Position (kb) 1000 1001 1002Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 999.593 kb on + strandat 999.847 kb on + strandat 999.849 kb on + strandat 999.850 kb on - strandat 999.865 kb on + strandat 1000.064 kb on + strand, within EX28DRAFT_0996at 1000.065 kb on - strand, within EX28DRAFT_0996at 1000.175 kb on + strand, within EX28DRAFT_0996at 1000.289 kb on + strand, within EX28DRAFT_0996at 1000.373 kb on + strandat 1000.373 kb on + strandat 1000.374 kb on - strandat 1000.374 kb on - strandat 1000.374 kb on - strandat 1000.374 kb on - strandat 1000.377 kb on + strandat 1000.378 kb on - strandat 1000.390 kb on - strandat 1000.393 kb on + strandat 1000.393 kb on + strandat 1000.394 kb on - strandat 1000.394 kb on - strandat 1000.395 kb on + strandat 1000.396 kb on - strandat 1000.396 kb on - strandat 1000.396 kb on - strandat 1000.416 kb on + strandat 1000.416 kb on + strandat 1000.417 kb on - strandat 1000.500 kb on - strandat 1000.523 kb on - strandat 1000.615 kb on + strand, within EX28DRAFT_0997at 1000.616 kb on - strand, within EX28DRAFT_0997at 1000.664 kb on - strand, within EX28DRAFT_0997at 1001.479 kb on + strandat 1001.712 kb on + strand, within EX28DRAFT_0998at 1001.713 kb on - strand, within EX28DRAFT_0998at 1001.713 kb on - strand, within EX28DRAFT_0998at 1001.854 kb on - strand, within EX28DRAFT_0998at 1002.142 kb on - strandat 1002.292 kb on - strandat 1002.292 kb on - strandat 1002.335 kb on + strandat 1002.335 kb on + strandat 1002.336 kb on - strandat 1002.336 kb on - strandat 1002.372 kb on + strandat 1002.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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999,593 + -0.3
999,847 + +2.2
999,849 + -0.3
999,850 - -0.2
999,865 + -0.3
1,000,064 + EX28DRAFT_0996 0.39 -0.9
1,000,065 - EX28DRAFT_0996 0.39 -0.3
1,000,175 + EX28DRAFT_0996 0.61 -0.2
1,000,289 + EX28DRAFT_0996 0.83 -0.4
1,000,373 + -0.4
1,000,373 + +0.0
1,000,374 - -1.6
1,000,374 - -0.2
1,000,374 - +0.5
1,000,374 - +0.2
1,000,377 + +0.2
1,000,378 - -1.0
1,000,390 - -0.4
1,000,393 + +0.4
1,000,393 + -0.6
1,000,394 - +0.7
1,000,394 - -0.7
1,000,395 + +0.6
1,000,396 - -0.6
1,000,396 - -0.2
1,000,396 - -0.1
1,000,416 + -0.2
1,000,416 + -0.8
1,000,417 - +0.5
1,000,500 - -0.8
1,000,523 - -0.3
1,000,615 + EX28DRAFT_0997 0.14 -0.4
1,000,616 - EX28DRAFT_0997 0.14 -0.5
1,000,664 - EX28DRAFT_0997 0.19 +0.2
1,001,479 + -0.0
1,001,712 + EX28DRAFT_0998 0.39 -2.5
1,001,713 - EX28DRAFT_0998 0.39 +0.2
1,001,713 - EX28DRAFT_0998 0.39 -0.2
1,001,854 - EX28DRAFT_0998 0.58 +0.1
1,002,142 - -0.2
1,002,292 - +0.6
1,002,292 - +1.2
1,002,335 + +0.2
1,002,335 + -0.7
1,002,336 - -0.1
1,002,336 - -2.8
1,002,372 + +0.4
1,002,390 - -0.7

Or see this region's nucleotide sequence