Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0938 and EX28DRAFT_0939 overlap by 4 nucleotides EX28DRAFT_0939 and EX28DRAFT_0940 are separated by 96 nucleotides
EX28DRAFT_0938: EX28DRAFT_0938 - Predicted metal-dependent phosphoesterases (PHP family), at 937,480 to 938,373
_0938
EX28DRAFT_0939: EX28DRAFT_0939 - tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family, at 938,370 to 938,990
_0939
EX28DRAFT_0940: EX28DRAFT_0940 - pseudouridine synthase, at 939,087 to 939,962
_0940
Position (kb) 938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 937.386 kb on + strand at 937.391 kb on - strand at 937.395 kb on - strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.507 kb on + strand at 937.516 kb on - strand at 937.527 kb on - strand at 937.527 kb on - strand at 937.537 kb on - strand at 937.537 kb on - strand at 937.763 kb on + strand, within EX28DRAFT_0938 at 937.779 kb on + strand, within EX28DRAFT_0938 at 937.780 kb on - strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 937.981 kb on + strand, within EX28DRAFT_0938 at 938.006 kb on - strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.040 kb on + strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.041 kb on - strand, within EX28DRAFT_0938 at 938.095 kb on + strand, within EX28DRAFT_0938 at 938.097 kb on + strand, within EX28DRAFT_0938 at 938.098 kb on - strand, within EX28DRAFT_0938 at 938.369 kb on + strand at 938.370 kb on - strand at 938.370 kb on - strand at 938.507 kb on + strand, within EX28DRAFT_0939 at 938.558 kb on + strand, within EX28DRAFT_0939 at 938.601 kb on + strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.602 kb on - strand, within EX28DRAFT_0939 at 938.607 kb on + strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.608 kb on - strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.658 kb on + strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.659 kb on - strand, within EX28DRAFT_0939 at 938.690 kb on - strand, within EX28DRAFT_0939 at 938.975 kb on - strand at 938.975 kb on - strand at 938.996 kb on + strand at 938.996 kb on + strand at 938.997 kb on - strand at 939.004 kb on + strand at 939.005 kb on - strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.006 kb on + strand at 939.300 kb on + strand, within EX28DRAFT_0940 at 939.304 kb on - strand, within EX28DRAFT_0940 at 939.637 kb on - strand, within EX28DRAFT_0940 at 939.772 kb on - strand, within EX28DRAFT_0940 at 939.801 kb on + strand, within EX28DRAFT_0940
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 937,386 + -2.8 937,391 - -1.2 937,395 - -0.6 937,507 + +0.0 937,507 + -0.1 937,507 + -0.1 937,516 - -0.9 937,527 - +1.4 937,527 - +0.1 937,537 - -0.2 937,537 - +0.3 937,763 + EX28DRAFT_0938 0.32 +0.8 937,779 + EX28DRAFT_0938 0.33 +0.1 937,780 - EX28DRAFT_0938 0.34 +0.1 937,981 + EX28DRAFT_0938 0.56 -0.0 937,981 + EX28DRAFT_0938 0.56 +1.6 938,006 - EX28DRAFT_0938 0.59 +0.1 938,040 + EX28DRAFT_0938 0.63 -0.1 938,040 + EX28DRAFT_0938 0.63 -0.2 938,041 - EX28DRAFT_0938 0.63 +0.4 938,041 - EX28DRAFT_0938 0.63 -0.5 938,095 + EX28DRAFT_0938 0.69 +0.9 938,097 + EX28DRAFT_0938 0.69 -0.2 938,098 - EX28DRAFT_0938 0.69 +0.4 938,369 + -0.8 938,370 - +0.6 938,370 - -0.4 938,507 + EX28DRAFT_0939 0.22 +0.4 938,558 + EX28DRAFT_0939 0.30 +0.4 938,601 + EX28DRAFT_0939 0.37 +0.2 938,602 - EX28DRAFT_0939 0.37 -1.5 938,602 - EX28DRAFT_0939 0.37 +0.3 938,602 - EX28DRAFT_0939 0.37 +0.0 938,607 + EX28DRAFT_0939 0.38 +0.6 938,608 - EX28DRAFT_0939 0.38 +0.1 938,608 - EX28DRAFT_0939 0.38 -0.0 938,608 - EX28DRAFT_0939 0.38 +1.2 938,608 - EX28DRAFT_0939 0.38 +0.4 938,608 - EX28DRAFT_0939 0.38 -0.2 938,658 + EX28DRAFT_0939 0.46 +1.4 938,658 + EX28DRAFT_0939 0.46 -0.9 938,658 + EX28DRAFT_0939 0.46 +1.0 938,659 - EX28DRAFT_0939 0.47 -0.2 938,659 - EX28DRAFT_0939 0.47 +1.7 938,659 - EX28DRAFT_0939 0.47 +0.3 938,690 - EX28DRAFT_0939 0.52 +0.5 938,975 - +0.5 938,975 - -0.4 938,996 + +0.3 938,996 + -0.2 938,997 - +1.7 939,004 + -0.1 939,005 - +0.8 939,006 + +0.3 939,006 + +1.0 939,006 + +0.4 939,300 + EX28DRAFT_0940 0.24 +0.2 939,304 - EX28DRAFT_0940 0.25 -0.2 939,637 - EX28DRAFT_0940 0.63 +0.1 939,772 - EX28DRAFT_0940 0.78 -0.3 939,801 + EX28DRAFT_0940 0.82 +0.6
Or see this region's nucleotide sequence