Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0887

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0884 and EX28DRAFT_0885 are separated by 66 nucleotidesEX28DRAFT_0885 and EX28DRAFT_0886 are separated by 31 nucleotidesEX28DRAFT_0886 and EX28DRAFT_0887 overlap by 41 nucleotidesEX28DRAFT_0887 and EX28DRAFT_0888 are separated by 200 nucleotidesEX28DRAFT_0888 and EX28DRAFT_0889 are separated by 412 nucleotides EX28DRAFT_0884: EX28DRAFT_0884 - hypothetical protein, at 892,838 to 893,338 _0884 EX28DRAFT_0885: EX28DRAFT_0885 - Protein of unknown function (DUF2732), at 893,405 to 893,614 _0885 EX28DRAFT_0886: EX28DRAFT_0886 - hypothetical protein, at 893,646 to 893,909 _0886 EX28DRAFT_0887: EX28DRAFT_0887 - Bacteriophage replication gene A protein (GPA), at 893,869 to 896,226 _0887 EX28DRAFT_0888: EX28DRAFT_0888 - hypothetical protein, at 896,427 to 896,684 _0888 EX28DRAFT_0889: EX28DRAFT_0889 - hypothetical protein, at 897,097 to 898,164 _0889 Position (kb) 893 894 895 896 897Strain fitness (log2 ratio) -2 -1 0 1 2at 892.904 kb on + strand, within EX28DRAFT_0884at 892.905 kb on - strand, within EX28DRAFT_0884at 892.996 kb on - strand, within EX28DRAFT_0884at 893.197 kb on + strand, within EX28DRAFT_0884at 893.198 kb on - strand, within EX28DRAFT_0884at 893.296 kb on + strandat 893.297 kb on - strandat 893.305 kb on - strandat 893.327 kb on + strandat 893.332 kb on - strandat 893.336 kb on + strandat 893.399 kb on - strandat 893.527 kb on + strand, within EX28DRAFT_0885at 893.569 kb on - strand, within EX28DRAFT_0885at 893.569 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.572 kb on - strand, within EX28DRAFT_0885at 893.653 kb on + strandat 893.666 kb on + strandat 893.676 kb on + strand, within EX28DRAFT_0886at 893.677 kb on - strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.798 kb on + strand, within EX28DRAFT_0886at 893.799 kb on - strand, within EX28DRAFT_0886at 893.904 kb on - strandat 893.907 kb on + strandat 893.908 kb on - strandat 893.910 kb on + strandat 893.996 kb on - strandat 893.996 kb on - strandat 894.124 kb on - strand, within EX28DRAFT_0887at 894.124 kb on - strand, within EX28DRAFT_0887at 894.124 kb on - strand, within EX28DRAFT_0887at 894.124 kb on - strand, within EX28DRAFT_0887at 894.133 kb on + strand, within EX28DRAFT_0887at 894.135 kb on + strand, within EX28DRAFT_0887at 894.135 kb on + strand, within EX28DRAFT_0887at 894.136 kb on - strand, within EX28DRAFT_0887at 894.164 kb on + strand, within EX28DRAFT_0887at 894.164 kb on + strand, within EX28DRAFT_0887at 894.176 kb on - strand, within EX28DRAFT_0887at 894.289 kb on + strand, within EX28DRAFT_0887at 894.289 kb on + strand, within EX28DRAFT_0887at 894.290 kb on - strand, within EX28DRAFT_0887at 894.306 kb on + strand, within EX28DRAFT_0887at 894.307 kb on - strand, within EX28DRAFT_0887at 894.345 kb on - strand, within EX28DRAFT_0887at 894.367 kb on + strand, within EX28DRAFT_0887at 894.378 kb on - strand, within EX28DRAFT_0887at 894.378 kb on - strand, within EX28DRAFT_0887at 894.447 kb on - strand, within EX28DRAFT_0887at 894.448 kb on + strand, within EX28DRAFT_0887at 894.645 kb on - strand, within EX28DRAFT_0887at 894.711 kb on + strand, within EX28DRAFT_0887at 894.765 kb on + strand, within EX28DRAFT_0887at 894.766 kb on - strand, within EX28DRAFT_0887at 894.795 kb on + strand, within EX28DRAFT_0887at 894.795 kb on + strand, within EX28DRAFT_0887at 894.813 kb on - strand, within EX28DRAFT_0887at 894.813 kb on - strand, within EX28DRAFT_0887at 894.837 kb on + strand, within EX28DRAFT_0887at 894.888 kb on + strand, within EX28DRAFT_0887at 894.889 kb on - strand, within EX28DRAFT_0887at 895.013 kb on - strand, within EX28DRAFT_0887at 895.016 kb on + strand, within EX28DRAFT_0887at 895.016 kb on + strand, within EX28DRAFT_0887at 895.017 kb on - strand, within EX28DRAFT_0887at 895.042 kb on - strand, within EX28DRAFT_0887at 895.065 kb on - strand, within EX28DRAFT_0887at 895.170 kb on + strand, within EX28DRAFT_0887at 895.245 kb on + strand, within EX28DRAFT_0887at 895.267 kb on + strand, within EX28DRAFT_0887at 895.269 kb on + strand, within EX28DRAFT_0887at 895.270 kb on - strand, within EX28DRAFT_0887at 895.279 kb on + strand, within EX28DRAFT_0887at 895.280 kb on - strand, within EX28DRAFT_0887at 895.280 kb on - strand, within EX28DRAFT_0887at 895.280 kb on - strand, within EX28DRAFT_0887at 895.392 kb on + strand, within EX28DRAFT_0887at 895.540 kb on + strand, within EX28DRAFT_0887at 895.660 kb on + strand, within EX28DRAFT_0887at 895.660 kb on + strand, within EX28DRAFT_0887at 895.791 kb on + strand, within EX28DRAFT_0887at 895.827 kb on + strand, within EX28DRAFT_0887at 895.935 kb on - strand, within EX28DRAFT_0887at 896.167 kb on - strandat 896.199 kb on + strandat 896.224 kb on + strandat 896.224 kb on + strandat 896.225 kb on - strandat 896.228 kb on + strandat 896.229 kb on - strandat 896.229 kb on - strandat 896.249 kb on + strandat 896.249 kb on + strandat 896.379 kb on - strandat 896.455 kb on + strand, within EX28DRAFT_0888at 896.455 kb on + strand, within EX28DRAFT_0888at 896.476 kb on + strand, within EX28DRAFT_0888at 896.580 kb on + strand, within EX28DRAFT_0888at 896.580 kb on + strand, within EX28DRAFT_0888at 896.788 kb on + strandat 896.788 kb on + strandat 896.845 kb on + strandat 896.848 kb on - strandat 896.848 kb on - strandat 896.859 kb on - strandat 896.900 kb on - strandat 896.908 kb on - strandat 896.920 kb on - strandat 896.939 kb on - strandat 896.944 kb on + strandat 896.975 kb on - strandat 897.005 kb on - strandat 897.012 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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892,904 + EX28DRAFT_0884 0.13 +0.7
892,905 - EX28DRAFT_0884 0.13 -0.3
892,996 - EX28DRAFT_0884 0.32 -1.0
893,197 + EX28DRAFT_0884 0.72 -0.5
893,198 - EX28DRAFT_0884 0.72 +0.9
893,296 + -1.1
893,297 - +0.4
893,305 - +1.2
893,327 + -0.5
893,332 - -0.2
893,336 + -0.0
893,399 - -0.5
893,527 + EX28DRAFT_0885 0.58 -2.7
893,569 - EX28DRAFT_0885 0.78 -0.2
893,569 - EX28DRAFT_0885 0.78 +0.0
893,572 - EX28DRAFT_0885 0.80 +0.3
893,572 - EX28DRAFT_0885 0.80 +0.2
893,572 - EX28DRAFT_0885 0.80 +0.2
893,653 + +0.9
893,666 + +0.7
893,676 + EX28DRAFT_0886 0.11 -0.2
893,677 - EX28DRAFT_0886 0.12 +0.3
893,798 + EX28DRAFT_0886 0.58 +0.0
893,798 + EX28DRAFT_0886 0.58 -0.3
893,798 + EX28DRAFT_0886 0.58 +0.7
893,798 + EX28DRAFT_0886 0.58 +0.4
893,798 + EX28DRAFT_0886 0.58 +0.2
893,799 - EX28DRAFT_0886 0.58 +1.3
893,904 - -0.4
893,907 + +1.2
893,908 - +0.6
893,910 + +0.9
893,996 - -0.9
893,996 - +0.1
894,124 - EX28DRAFT_0887 0.11 +1.4
894,124 - EX28DRAFT_0887 0.11 +0.3
894,124 - EX28DRAFT_0887 0.11 +0.2
894,124 - EX28DRAFT_0887 0.11 -0.6
894,133 + EX28DRAFT_0887 0.11 +0.2
894,135 + EX28DRAFT_0887 0.11 -0.2
894,135 + EX28DRAFT_0887 0.11 +0.2
894,136 - EX28DRAFT_0887 0.11 -0.3
894,164 + EX28DRAFT_0887 0.13 -0.2
894,164 + EX28DRAFT_0887 0.13 -0.3
894,176 - EX28DRAFT_0887 0.13 +0.1
894,289 + EX28DRAFT_0887 0.18 +0.2
894,289 + EX28DRAFT_0887 0.18 +0.1
894,290 - EX28DRAFT_0887 0.18 +0.3
894,306 + EX28DRAFT_0887 0.19 -0.5
894,307 - EX28DRAFT_0887 0.19 -0.1
894,345 - EX28DRAFT_0887 0.20 +0.0
894,367 + EX28DRAFT_0887 0.21 +0.2
894,378 - EX28DRAFT_0887 0.22 -0.0
894,378 - EX28DRAFT_0887 0.22 -0.7
894,447 - EX28DRAFT_0887 0.25 -1.5
894,448 + EX28DRAFT_0887 0.25 -0.4
894,645 - EX28DRAFT_0887 0.33 +0.1
894,711 + EX28DRAFT_0887 0.36 -0.8
894,765 + EX28DRAFT_0887 0.38 +0.3
894,766 - EX28DRAFT_0887 0.38 -0.0
894,795 + EX28DRAFT_0887 0.39 -1.4
894,795 + EX28DRAFT_0887 0.39 +1.8
894,813 - EX28DRAFT_0887 0.40 -0.1
894,813 - EX28DRAFT_0887 0.40 -1.0
894,837 + EX28DRAFT_0887 0.41 +0.5
894,888 + EX28DRAFT_0887 0.43 -0.6
894,889 - EX28DRAFT_0887 0.43 +0.3
895,013 - EX28DRAFT_0887 0.49 +0.1
895,016 + EX28DRAFT_0887 0.49 -0.4
895,016 + EX28DRAFT_0887 0.49 -0.9
895,017 - EX28DRAFT_0887 0.49 +0.0
895,042 - EX28DRAFT_0887 0.50 -0.2
895,065 - EX28DRAFT_0887 0.51 -0.4
895,170 + EX28DRAFT_0887 0.55 -0.3
895,245 + EX28DRAFT_0887 0.58 +0.4
895,267 + EX28DRAFT_0887 0.59 -0.1
895,269 + EX28DRAFT_0887 0.59 -0.1
895,270 - EX28DRAFT_0887 0.59 -0.6
895,279 + EX28DRAFT_0887 0.60 +0.5
895,280 - EX28DRAFT_0887 0.60 -2.1
895,280 - EX28DRAFT_0887 0.60 +0.3
895,280 - EX28DRAFT_0887 0.60 -0.2
895,392 + EX28DRAFT_0887 0.65 -1.4
895,540 + EX28DRAFT_0887 0.71 -0.2
895,660 + EX28DRAFT_0887 0.76 -0.3
895,660 + EX28DRAFT_0887 0.76 +0.4
895,791 + EX28DRAFT_0887 0.82 -0.2
895,827 + EX28DRAFT_0887 0.83 -0.8
895,935 - EX28DRAFT_0887 0.88 -1.3
896,167 - -0.9
896,199 + -0.1
896,224 + -0.2
896,224 + +0.5
896,225 - -0.7
896,228 + -0.2
896,229 - -0.3
896,229 - -1.3
896,249 + -0.3
896,249 + +0.3
896,379 - +0.1
896,455 + EX28DRAFT_0888 0.11 +0.9
896,455 + EX28DRAFT_0888 0.11 +0.0
896,476 + EX28DRAFT_0888 0.19 -0.1
896,580 + EX28DRAFT_0888 0.59 -0.5
896,580 + EX28DRAFT_0888 0.59 +0.4
896,788 + -0.2
896,788 + -0.4
896,845 + +1.2
896,848 - -0.6
896,848 - +0.6
896,859 - -0.1
896,900 - +0.9
896,908 - -0.7
896,920 - +0.2
896,939 - +0.4
896,944 + +0.5
896,975 - -0.9
897,005 - -1.9
897,012 + +1.0

Or see this region's nucleotide sequence