Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0859

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0858 and EX28DRAFT_0859 are separated by 46 nucleotidesEX28DRAFT_0859 and EX28DRAFT_0860 are separated by 114 nucleotides EX28DRAFT_0858: EX28DRAFT_0858 - formyltetrahydrofolate deformylase, at 869,799 to 870,641 _0858 EX28DRAFT_0859: EX28DRAFT_0859 - Uncharacterized protein conserved in bacteria, at 870,688 to 871,146 _0859 EX28DRAFT_0860: EX28DRAFT_0860 - Predicted esterase of the alpha-beta hydrolase superfamily, at 871,261 to 872,163 _0860 Position (kb) 870 871 872Strain fitness (log2 ratio) -2 -1 0 1 2at 869.715 kb on - strandat 869.801 kb on - strandat 869.920 kb on + strand, within EX28DRAFT_0858at 869.920 kb on + strand, within EX28DRAFT_0858at 869.921 kb on - strand, within EX28DRAFT_0858at 869.921 kb on - strand, within EX28DRAFT_0858at 869.986 kb on + strand, within EX28DRAFT_0858at 870.092 kb on + strand, within EX28DRAFT_0858at 870.154 kb on + strand, within EX28DRAFT_0858at 870.154 kb on + strand, within EX28DRAFT_0858at 870.154 kb on + strand, within EX28DRAFT_0858at 870.155 kb on - strand, within EX28DRAFT_0858at 870.623 kb on + strandat 870.630 kb on + strandat 870.661 kb on + strandat 870.661 kb on + strandat 870.689 kb on + strandat 870.774 kb on + strand, within EX28DRAFT_0859at 870.775 kb on - strand, within EX28DRAFT_0859at 870.775 kb on - strand, within EX28DRAFT_0859at 870.775 kb on - strand, within EX28DRAFT_0859at 870.775 kb on - strand, within EX28DRAFT_0859at 870.776 kb on + strand, within EX28DRAFT_0859at 870.776 kb on + strand, within EX28DRAFT_0859at 870.776 kb on + strand, within EX28DRAFT_0859at 870.777 kb on - strand, within EX28DRAFT_0859at 870.779 kb on + strand, within EX28DRAFT_0859at 870.779 kb on + strand, within EX28DRAFT_0859at 870.780 kb on - strand, within EX28DRAFT_0859at 870.799 kb on + strand, within EX28DRAFT_0859at 870.800 kb on - strand, within EX28DRAFT_0859at 870.834 kb on + strand, within EX28DRAFT_0859at 870.834 kb on + strand, within EX28DRAFT_0859at 870.835 kb on - strand, within EX28DRAFT_0859at 870.870 kb on - strand, within EX28DRAFT_0859at 870.905 kb on + strand, within EX28DRAFT_0859at 870.905 kb on + strand, within EX28DRAFT_0859at 871.004 kb on + strand, within EX28DRAFT_0859at 871.034 kb on + strand, within EX28DRAFT_0859at 871.102 kb on + strandat 871.102 kb on + strandat 871.103 kb on - strandat 871.103 kb on - strandat 871.103 kb on - strandat 871.103 kb on - strandat 871.122 kb on + strandat 871.167 kb on + strandat 871.170 kb on + strandat 871.170 kb on + strandat 871.170 kb on + strandat 871.198 kb on + strandat 871.199 kb on - strandat 871.202 kb on + strandat 871.227 kb on - strandat 871.248 kb on + strandat 871.333 kb on - strandat 871.361 kb on + strand, within EX28DRAFT_0860at 871.362 kb on - strand, within EX28DRAFT_0860at 871.385 kb on + strand, within EX28DRAFT_0860at 871.385 kb on + strand, within EX28DRAFT_0860at 871.386 kb on - strand, within EX28DRAFT_0860at 871.785 kb on - strand, within EX28DRAFT_0860at 871.953 kb on - strand, within EX28DRAFT_0860at 872.028 kb on + strand, within EX28DRAFT_0860at 872.028 kb on + strand, within EX28DRAFT_0860at 872.035 kb on - strand, within EX28DRAFT_0860at 872.035 kb on - strand, within EX28DRAFT_0860

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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869,715 - -0.2
869,801 - -0.7
869,920 + EX28DRAFT_0858 0.14 +0.1
869,920 + EX28DRAFT_0858 0.14 -0.1
869,921 - EX28DRAFT_0858 0.14 -0.0
869,921 - EX28DRAFT_0858 0.14 +0.8
869,986 + EX28DRAFT_0858 0.22 -0.1
870,092 + EX28DRAFT_0858 0.35 +0.9
870,154 + EX28DRAFT_0858 0.42 -0.0
870,154 + EX28DRAFT_0858 0.42 +0.3
870,154 + EX28DRAFT_0858 0.42 -0.0
870,155 - EX28DRAFT_0858 0.42 -0.0
870,623 + -1.6
870,630 + +0.0
870,661 + +2.4
870,661 + +1.0
870,689 + +0.2
870,774 + EX28DRAFT_0859 0.19 +0.4
870,775 - EX28DRAFT_0859 0.19 +1.0
870,775 - EX28DRAFT_0859 0.19 -0.5
870,775 - EX28DRAFT_0859 0.19 -0.1
870,775 - EX28DRAFT_0859 0.19 +0.6
870,776 + EX28DRAFT_0859 0.19 -0.2
870,776 + EX28DRAFT_0859 0.19 -0.1
870,776 + EX28DRAFT_0859 0.19 +0.2
870,777 - EX28DRAFT_0859 0.19 +0.9
870,779 + EX28DRAFT_0859 0.20 -1.1
870,779 + EX28DRAFT_0859 0.20 +0.7
870,780 - EX28DRAFT_0859 0.20 -0.4
870,799 + EX28DRAFT_0859 0.24 +0.6
870,800 - EX28DRAFT_0859 0.24 +0.2
870,834 + EX28DRAFT_0859 0.32 +0.6
870,834 + EX28DRAFT_0859 0.32 +1.0
870,835 - EX28DRAFT_0859 0.32 +0.0
870,870 - EX28DRAFT_0859 0.40 -0.7
870,905 + EX28DRAFT_0859 0.47 +0.6
870,905 + EX28DRAFT_0859 0.47 +0.5
871,004 + EX28DRAFT_0859 0.69 +0.6
871,034 + EX28DRAFT_0859 0.75 -0.1
871,102 + -0.8
871,102 + +0.7
871,103 - -0.3
871,103 - -0.8
871,103 - +0.1
871,103 - +0.1
871,122 + +0.5
871,167 + -0.2
871,170 + +0.4
871,170 + +0.8
871,170 + +1.5
871,198 + +0.9
871,199 - -2.4
871,202 + -0.4
871,227 - -1.1
871,248 + +0.3
871,333 - -0.9
871,361 + EX28DRAFT_0860 0.11 -1.0
871,362 - EX28DRAFT_0860 0.11 -0.8
871,385 + EX28DRAFT_0860 0.14 -0.5
871,385 + EX28DRAFT_0860 0.14 +0.9
871,386 - EX28DRAFT_0860 0.14 -1.4
871,785 - EX28DRAFT_0860 0.58 -1.2
871,953 - EX28DRAFT_0860 0.77 -1.1
872,028 + EX28DRAFT_0860 0.85 +0.4
872,028 + EX28DRAFT_0860 0.85 +0.0
872,035 - EX28DRAFT_0860 0.86 -0.9
872,035 - EX28DRAFT_0860 0.86 -2.6

Or see this region's nucleotide sequence