Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0809

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0808 and EX28DRAFT_0809 are separated by 65 nucleotidesEX28DRAFT_0809 and EX28DRAFT_0810 are separated by 58 nucleotidesEX28DRAFT_0810 and EX28DRAFT_0811 are separated by 115 nucleotides EX28DRAFT_0808: EX28DRAFT_0808 - Serine/threonine protein kinase, at 810,126 to 811,544 _0808 EX28DRAFT_0809: EX28DRAFT_0809 - Rhs element Vgr protein, at 811,610 to 814,150 _0809 EX28DRAFT_0810: EX28DRAFT_0810 - hypothetical protein, at 814,209 to 814,643 _0810 EX28DRAFT_0811: EX28DRAFT_0811 - hypothetical protein, at 814,759 to 815,274 _0811 Position (kb) 811 812 813 814 815Strain fitness (log2 ratio) -2 -1 0 1 2at 810.759 kb on + strand, within EX28DRAFT_0808at 810.805 kb on - strand, within EX28DRAFT_0808at 810.919 kb on - strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.009 kb on + strand, within EX28DRAFT_0808at 811.010 kb on - strand, within EX28DRAFT_0808at 811.010 kb on - strand, within EX28DRAFT_0808at 811.353 kb on + strand, within EX28DRAFT_0808at 811.354 kb on - strand, within EX28DRAFT_0808at 811.428 kb on + strandat 811.543 kb on - strandat 811.589 kb on - strandat 811.593 kb on + strandat 811.594 kb on - strandat 811.610 kb on - strandat 811.805 kb on + strandat 812.196 kb on - strand, within EX28DRAFT_0809at 812.375 kb on + strand, within EX28DRAFT_0809at 812.375 kb on + strand, within EX28DRAFT_0809at 812.420 kb on + strand, within EX28DRAFT_0809at 812.553 kb on - strand, within EX28DRAFT_0809at 812.553 kb on - strand, within EX28DRAFT_0809at 812.756 kb on + strand, within EX28DRAFT_0809at 812.932 kb on + strand, within EX28DRAFT_0809at 812.932 kb on + strand, within EX28DRAFT_0809at 812.936 kb on - strand, within EX28DRAFT_0809at 812.936 kb on - strand, within EX28DRAFT_0809at 812.951 kb on + strand, within EX28DRAFT_0809at 812.951 kb on + strand, within EX28DRAFT_0809at 813.278 kb on + strand, within EX28DRAFT_0809at 813.279 kb on - strand, within EX28DRAFT_0809at 813.279 kb on - strand, within EX28DRAFT_0809at 813.284 kb on - strand, within EX28DRAFT_0809at 813.401 kb on + strand, within EX28DRAFT_0809at 813.401 kb on + strand, within EX28DRAFT_0809at 813.401 kb on + strand, within EX28DRAFT_0809at 813.401 kb on + strand, within EX28DRAFT_0809at 813.402 kb on - strand, within EX28DRAFT_0809at 813.402 kb on - strand, within EX28DRAFT_0809at 813.403 kb on + strand, within EX28DRAFT_0809at 813.404 kb on - strand, within EX28DRAFT_0809at 813.433 kb on + strand, within EX28DRAFT_0809at 813.434 kb on - strand, within EX28DRAFT_0809at 813.434 kb on - strand, within EX28DRAFT_0809at 813.478 kb on + strand, within EX28DRAFT_0809at 813.487 kb on + strand, within EX28DRAFT_0809at 813.532 kb on + strand, within EX28DRAFT_0809at 813.533 kb on - strand, within EX28DRAFT_0809at 813.627 kb on + strand, within EX28DRAFT_0809at 813.627 kb on + strand, within EX28DRAFT_0809at 813.627 kb on + strand, within EX28DRAFT_0809at 813.628 kb on - strand, within EX28DRAFT_0809at 813.628 kb on - strand, within EX28DRAFT_0809at 813.628 kb on - strand, within EX28DRAFT_0809at 813.631 kb on + strand, within EX28DRAFT_0809at 813.631 kb on + strand, within EX28DRAFT_0809at 813.669 kb on + strand, within EX28DRAFT_0809at 813.669 kb on + strand, within EX28DRAFT_0809at 813.669 kb on + strand, within EX28DRAFT_0809at 813.670 kb on - strand, within EX28DRAFT_0809at 813.673 kb on + strand, within EX28DRAFT_0809at 813.673 kb on + strand, within EX28DRAFT_0809at 813.673 kb on + strand, within EX28DRAFT_0809at 813.673 kb on + strand, within EX28DRAFT_0809at 813.673 kb on + strand, within EX28DRAFT_0809at 813.673 kb on + strand, within EX28DRAFT_0809at 813.674 kb on - strand, within EX28DRAFT_0809at 813.674 kb on - strand, within EX28DRAFT_0809at 813.674 kb on - strand, within EX28DRAFT_0809at 813.719 kb on - strand, within EX28DRAFT_0809at 813.752 kb on - strand, within EX28DRAFT_0809at 813.754 kb on + strand, within EX28DRAFT_0809at 813.829 kb on - strand, within EX28DRAFT_0809at 813.829 kb on - strand, within EX28DRAFT_0809at 813.830 kb on + strand, within EX28DRAFT_0809at 813.831 kb on - strand, within EX28DRAFT_0809at 813.866 kb on + strand, within EX28DRAFT_0809at 813.992 kb on + strandat 813.992 kb on + strandat 813.992 kb on + strandat 813.992 kb on + strandat 813.993 kb on - strandat 813.994 kb on + strandat 813.994 kb on + strandat 813.994 kb on + strandat 813.995 kb on - strandat 813.997 kb on + strandat 813.998 kb on - strandat 813.998 kb on - strandat 813.998 kb on - strandat 814.000 kb on + strandat 814.000 kb on + strandat 814.001 kb on - strandat 814.005 kb on - strandat 814.005 kb on - strandat 814.005 kb on - strandat 814.005 kb on - strandat 814.028 kb on - strandat 814.028 kb on - strandat 814.049 kb on - strandat 814.049 kb on - strandat 814.116 kb on - strandat 814.118 kb on + strandat 814.131 kb on - strandat 814.148 kb on + strandat 814.148 kb on + strandat 814.641 kb on + strandat 814.694 kb on + strandat 814.716 kb on + strandat 814.716 kb on + strandat 814.716 kb on + strandat 814.716 kb on + strandat 814.800 kb on + strandat 814.955 kb on - strand, within EX28DRAFT_0811at 814.991 kb on + strand, within EX28DRAFT_0811at 814.991 kb on + strand, within EX28DRAFT_0811at 814.991 kb on + strand, within EX28DRAFT_0811at 815.042 kb on - strand, within EX28DRAFT_0811at 815.043 kb on + strand, within EX28DRAFT_0811at 815.043 kb on + strand, within EX28DRAFT_0811at 815.043 kb on + strand, within EX28DRAFT_0811at 815.044 kb on - strand, within EX28DRAFT_0811

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
810,759 + EX28DRAFT_0808 0.45 +0.3
810,805 - EX28DRAFT_0808 0.48 +0.8
810,919 - EX28DRAFT_0808 0.56 +0.9
811,009 + EX28DRAFT_0808 0.62 +1.6
811,009 + EX28DRAFT_0808 0.62 -0.5
811,009 + EX28DRAFT_0808 0.62 +0.6
811,009 + EX28DRAFT_0808 0.62 +0.7
811,010 - EX28DRAFT_0808 0.62 +0.6
811,010 - EX28DRAFT_0808 0.62 +0.0
811,353 + EX28DRAFT_0808 0.86 +1.1
811,354 - EX28DRAFT_0808 0.87 +1.3
811,428 + +0.9
811,543 - +0.7
811,589 - -0.6
811,593 + -0.0
811,594 - +1.4
811,610 - +0.5
811,805 + +0.6
812,196 - EX28DRAFT_0809 0.23 -2.5
812,375 + EX28DRAFT_0809 0.30 +0.1
812,375 + EX28DRAFT_0809 0.30 +0.5
812,420 + EX28DRAFT_0809 0.32 +0.8
812,553 - EX28DRAFT_0809 0.37 +0.9
812,553 - EX28DRAFT_0809 0.37 -0.6
812,756 + EX28DRAFT_0809 0.45 -0.3
812,932 + EX28DRAFT_0809 0.52 -0.2
812,932 + EX28DRAFT_0809 0.52 -0.1
812,936 - EX28DRAFT_0809 0.52 +0.2
812,936 - EX28DRAFT_0809 0.52 -0.2
812,951 + EX28DRAFT_0809 0.53 -0.1
812,951 + EX28DRAFT_0809 0.53 +0.4
813,278 + EX28DRAFT_0809 0.66 +0.2
813,279 - EX28DRAFT_0809 0.66 -0.0
813,279 - EX28DRAFT_0809 0.66 +0.4
813,284 - EX28DRAFT_0809 0.66 +0.2
813,401 + EX28DRAFT_0809 0.70 +0.1
813,401 + EX28DRAFT_0809 0.70 +0.4
813,401 + EX28DRAFT_0809 0.70 +1.1
813,401 + EX28DRAFT_0809 0.70 +0.5
813,402 - EX28DRAFT_0809 0.71 -0.9
813,402 - EX28DRAFT_0809 0.71 +0.2
813,403 + EX28DRAFT_0809 0.71 -0.8
813,404 - EX28DRAFT_0809 0.71 +0.4
813,433 + EX28DRAFT_0809 0.72 +0.5
813,434 - EX28DRAFT_0809 0.72 -0.1
813,434 - EX28DRAFT_0809 0.72 +0.3
813,478 + EX28DRAFT_0809 0.74 +0.5
813,487 + EX28DRAFT_0809 0.74 +1.5
813,532 + EX28DRAFT_0809 0.76 +0.6
813,533 - EX28DRAFT_0809 0.76 +0.9
813,627 + EX28DRAFT_0809 0.79 -0.0
813,627 + EX28DRAFT_0809 0.79 -0.4
813,627 + EX28DRAFT_0809 0.79 -0.0
813,628 - EX28DRAFT_0809 0.79 -0.2
813,628 - EX28DRAFT_0809 0.79 -1.1
813,628 - EX28DRAFT_0809 0.79 +0.3
813,631 + EX28DRAFT_0809 0.80 +0.5
813,631 + EX28DRAFT_0809 0.80 +0.5
813,669 + EX28DRAFT_0809 0.81 -0.2
813,669 + EX28DRAFT_0809 0.81 -0.4
813,669 + EX28DRAFT_0809 0.81 +0.2
813,670 - EX28DRAFT_0809 0.81 -0.1
813,673 + EX28DRAFT_0809 0.81 -0.8
813,673 + EX28DRAFT_0809 0.81 +1.0
813,673 + EX28DRAFT_0809 0.81 -0.3
813,673 + EX28DRAFT_0809 0.81 -0.3
813,673 + EX28DRAFT_0809 0.81 +0.0
813,673 + EX28DRAFT_0809 0.81 -0.7
813,674 - EX28DRAFT_0809 0.81 +0.1
813,674 - EX28DRAFT_0809 0.81 -0.4
813,674 - EX28DRAFT_0809 0.81 +0.2
813,719 - EX28DRAFT_0809 0.83 -0.6
813,752 - EX28DRAFT_0809 0.84 +0.1
813,754 + EX28DRAFT_0809 0.84 +0.9
813,829 - EX28DRAFT_0809 0.87 -0.1
813,829 - EX28DRAFT_0809 0.87 -0.1
813,830 + EX28DRAFT_0809 0.87 -0.1
813,831 - EX28DRAFT_0809 0.87 +0.2
813,866 + EX28DRAFT_0809 0.89 +0.7
813,992 + -0.0
813,992 + +0.5
813,992 + +0.1
813,992 + -0.4
813,993 - -0.2
813,994 + +0.0
813,994 + +0.3
813,994 + +0.6
813,995 - +0.8
813,997 + +0.3
813,998 - -0.3
813,998 - +0.8
813,998 - -0.2
814,000 + -0.1
814,000 + +0.4
814,001 - +2.3
814,005 - -0.4
814,005 - -0.0
814,005 - -0.2
814,005 - -0.1
814,028 - -0.3
814,028 - -1.0
814,049 - -0.7
814,049 - -1.4
814,116 - +0.3
814,118 + -0.9
814,131 - -0.2
814,148 + +0.4
814,148 + +0.3
814,641 + -1.4
814,694 + +0.9
814,716 + -0.1
814,716 + -0.1
814,716 + -1.8
814,716 + -0.2
814,800 + +0.8
814,955 - EX28DRAFT_0811 0.38 +0.1
814,991 + EX28DRAFT_0811 0.45 +0.6
814,991 + EX28DRAFT_0811 0.45 -1.0
814,991 + EX28DRAFT_0811 0.45 +0.4
815,042 - EX28DRAFT_0811 0.55 -0.1
815,043 + EX28DRAFT_0811 0.55 +0.5
815,043 + EX28DRAFT_0811 0.55 +0.2
815,043 + EX28DRAFT_0811 0.55 -0.4
815,044 - EX28DRAFT_0811 0.55 -0.7

Or see this region's nucleotide sequence