Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0806 and EX28DRAFT_0807 are separated by 34 nucleotides EX28DRAFT_0807 and EX28DRAFT_0808 are separated by 24 nucleotides
EX28DRAFT_0806: EX28DRAFT_0806 - type VI secretion protein, VC_A0111 family, at 806,408 to 807,451
_0806
EX28DRAFT_0807: EX28DRAFT_0807 - type VI secretion ATPase, ClpV1 family, at 807,486 to 810,101
_0807
EX28DRAFT_0808: EX28DRAFT_0808 - Serine/threonine protein kinase, at 810,126 to 811,544
_0808
Position (kb) 807
808
809
810
811 Strain fitness (log2 ratio) -1
0
1
2
3 at 806.683 kb on + strand, within EX28DRAFT_0806 at 806.684 kb on - strand, within EX28DRAFT_0806 at 806.759 kb on + strand, within EX28DRAFT_0806 at 806.759 kb on + strand, within EX28DRAFT_0806 at 806.760 kb on - strand, within EX28DRAFT_0806 at 806.828 kb on + strand, within EX28DRAFT_0806 at 807.039 kb on - strand, within EX28DRAFT_0806 at 807.044 kb on - strand, within EX28DRAFT_0806 at 807.227 kb on + strand, within EX28DRAFT_0806 at 807.228 kb on - strand, within EX28DRAFT_0806 at 807.228 kb on - strand, within EX28DRAFT_0806 at 807.376 kb on - strand at 807.380 kb on + strand at 807.434 kb on + strand at 807.449 kb on + strand at 807.459 kb on - strand at 807.497 kb on + strand at 807.535 kb on + strand at 807.535 kb on + strand at 807.536 kb on - strand at 807.539 kb on + strand at 807.539 kb on + strand at 807.588 kb on + strand at 807.588 kb on + strand at 807.589 kb on - strand at 807.759 kb on - strand, within EX28DRAFT_0807 at 808.373 kb on + strand, within EX28DRAFT_0807 at 808.683 kb on + strand, within EX28DRAFT_0807 at 808.684 kb on - strand, within EX28DRAFT_0807 at 808.684 kb on - strand, within EX28DRAFT_0807 at 808.684 kb on - strand, within EX28DRAFT_0807 at 808.903 kb on - strand, within EX28DRAFT_0807 at 809.306 kb on + strand, within EX28DRAFT_0807 at 809.307 kb on - strand, within EX28DRAFT_0807 at 809.464 kb on + strand, within EX28DRAFT_0807 at 809.464 kb on + strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.465 kb on - strand, within EX28DRAFT_0807 at 809.645 kb on + strand, within EX28DRAFT_0807 at 809.799 kb on + strand, within EX28DRAFT_0807 at 809.800 kb on - strand, within EX28DRAFT_0807 at 809.888 kb on + strand at 809.889 kb on - strand at 810.014 kb on - strand at 810.014 kb on - strand at 810.102 kb on + strand at 810.121 kb on - strand at 810.140 kb on + strand at 810.287 kb on + strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.469 kb on - strand, within EX28DRAFT_0808 at 810.486 kb on + strand, within EX28DRAFT_0808 at 810.606 kb on + strand, within EX28DRAFT_0808 at 810.759 kb on + strand, within EX28DRAFT_0808 at 810.805 kb on - strand, within EX28DRAFT_0808 at 810.919 kb on - strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.009 kb on + strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808 at 811.010 kb on - strand, within EX28DRAFT_0808
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 806,683 + EX28DRAFT_0806 0.26 +0.0 806,684 - EX28DRAFT_0806 0.26 +1.4 806,759 + EX28DRAFT_0806 0.34 +0.3 806,759 + EX28DRAFT_0806 0.34 -0.3 806,760 - EX28DRAFT_0806 0.34 +0.6 806,828 + EX28DRAFT_0806 0.40 -1.4 807,039 - EX28DRAFT_0806 0.60 +0.4 807,044 - EX28DRAFT_0806 0.61 +0.2 807,227 + EX28DRAFT_0806 0.78 -1.2 807,228 - EX28DRAFT_0806 0.79 +1.0 807,228 - EX28DRAFT_0806 0.79 +0.3 807,376 - +1.6 807,380 + +2.8 807,434 + -0.2 807,449 + +1.0 807,459 - +0.8 807,497 + +0.5 807,535 + -1.4 807,535 + -0.1 807,536 - +0.5 807,539 + +0.4 807,539 + +0.4 807,588 + -1.3 807,588 + +0.3 807,589 - +1.1 807,759 - EX28DRAFT_0807 0.10 -0.1 808,373 + EX28DRAFT_0807 0.34 +0.8 808,683 + EX28DRAFT_0807 0.46 -0.3 808,684 - EX28DRAFT_0807 0.46 -0.3 808,684 - EX28DRAFT_0807 0.46 +1.1 808,684 - EX28DRAFT_0807 0.46 -0.0 808,903 - EX28DRAFT_0807 0.54 -0.1 809,306 + EX28DRAFT_0807 0.70 -0.1 809,307 - EX28DRAFT_0807 0.70 +0.3 809,464 + EX28DRAFT_0807 0.76 -0.2 809,464 + EX28DRAFT_0807 0.76 +0.4 809,465 - EX28DRAFT_0807 0.76 +0.4 809,465 - EX28DRAFT_0807 0.76 -0.9 809,465 - EX28DRAFT_0807 0.76 +0.8 809,645 + EX28DRAFT_0807 0.83 -0.1 809,799 + EX28DRAFT_0807 0.88 -0.2 809,800 - EX28DRAFT_0807 0.88 +1.2 809,888 + +0.2 809,889 - -0.2 810,014 - +0.6 810,014 - +1.7 810,102 + +1.4 810,121 - -0.4 810,140 + +1.0 810,287 + EX28DRAFT_0808 0.11 -0.9 810,469 - EX28DRAFT_0808 0.24 +0.8 810,469 - EX28DRAFT_0808 0.24 +0.6 810,469 - EX28DRAFT_0808 0.24 +0.2 810,469 - EX28DRAFT_0808 0.24 +0.9 810,486 + EX28DRAFT_0808 0.25 +0.8 810,606 + EX28DRAFT_0808 0.34 +0.9 810,759 + EX28DRAFT_0808 0.45 +0.3 810,805 - EX28DRAFT_0808 0.48 +0.8 810,919 - EX28DRAFT_0808 0.56 +0.9 811,009 + EX28DRAFT_0808 0.62 +1.6 811,009 + EX28DRAFT_0808 0.62 -0.5 811,009 + EX28DRAFT_0808 0.62 +0.6 811,009 + EX28DRAFT_0808 0.62 +0.7 811,010 - EX28DRAFT_0808 0.62 +0.6 811,010 - EX28DRAFT_0808 0.62 +0.0
Or see this region's nucleotide sequence