Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0728 and EX28DRAFT_0729 are separated by 179 nucleotides EX28DRAFT_0729 and EX28DRAFT_0730 are separated by 68 nucleotides EX28DRAFT_0730 and EX28DRAFT_0731 are separated by 161 nucleotides EX28DRAFT_0731 and EX28DRAFT_0732 are separated by 74 nucleotides
EX28DRAFT_0728: EX28DRAFT_0728 - Major Facilitator Superfamily, at 727,347 to 728,720
_0728
EX28DRAFT_0729: EX28DRAFT_0729 - transcriptional regulator, IclR family, at 728,900 to 729,691
_0729
EX28DRAFT_0730: EX28DRAFT_0730 - YobH-like protein, at 729,760 to 729,999
_0730
EX28DRAFT_0731: EX28DRAFT_0731 - MgrB protein, at 730,161 to 730,304
_0731
EX28DRAFT_0732: EX28DRAFT_0732 - YebO-like protein, at 730,379 to 730,669
_0732
Position (kb) 728
729
730 Strain fitness (log2 ratio) -2
-1
0
1
2 at 727.923 kb on - strand, within EX28DRAFT_0728 at 727.923 kb on - strand, within EX28DRAFT_0728 at 727.944 kb on + strand, within EX28DRAFT_0728 at 728.169 kb on + strand, within EX28DRAFT_0728 at 728.196 kb on - strand, within EX28DRAFT_0728 at 728.199 kb on - strand, within EX28DRAFT_0728 at 728.199 kb on - strand, within EX28DRAFT_0728 at 728.246 kb on + strand, within EX28DRAFT_0728 at 728.246 kb on + strand, within EX28DRAFT_0728 at 728.247 kb on - strand, within EX28DRAFT_0728 at 728.406 kb on - strand, within EX28DRAFT_0728 at 728.430 kb on + strand, within EX28DRAFT_0728 at 728.430 kb on + strand, within EX28DRAFT_0728 at 728.471 kb on - strand, within EX28DRAFT_0728 at 728.493 kb on - strand, within EX28DRAFT_0728 at 728.649 kb on - strand at 728.669 kb on + strand at 728.669 kb on + strand at 728.670 kb on - strand at 728.677 kb on + strand at 728.722 kb on - strand at 728.763 kb on + strand at 728.788 kb on + strand at 728.849 kb on - strand at 728.875 kb on + strand at 728.875 kb on + strand at 728.897 kb on + strand at 728.967 kb on + strand at 728.994 kb on + strand, within EX28DRAFT_0729 at 728.998 kb on + strand, within EX28DRAFT_0729 at 729.032 kb on - strand, within EX28DRAFT_0729 at 729.042 kb on + strand, within EX28DRAFT_0729 at 729.043 kb on - strand, within EX28DRAFT_0729 at 729.054 kb on + strand, within EX28DRAFT_0729 at 729.077 kb on + strand, within EX28DRAFT_0729 at 729.257 kb on + strand, within EX28DRAFT_0729 at 729.257 kb on + strand, within EX28DRAFT_0729 at 729.281 kb on + strand, within EX28DRAFT_0729 at 729.281 kb on + strand, within EX28DRAFT_0729 at 729.282 kb on - strand, within EX28DRAFT_0729 at 729.297 kb on - strand, within EX28DRAFT_0729 at 729.556 kb on - strand, within EX28DRAFT_0729 at 729.570 kb on + strand, within EX28DRAFT_0729 at 729.571 kb on - strand, within EX28DRAFT_0729 at 729.575 kb on - strand, within EX28DRAFT_0729 at 729.592 kb on - strand, within EX28DRAFT_0729 at 729.620 kb on + strand at 729.620 kb on + strand at 729.621 kb on - strand at 729.650 kb on - strand at 729.704 kb on + strand at 729.872 kb on - strand, within EX28DRAFT_0730 at 729.875 kb on + strand, within EX28DRAFT_0730 at 729.975 kb on + strand, within EX28DRAFT_0730 at 730.022 kb on + strand at 730.034 kb on - strand at 730.034 kb on - strand at 730.100 kb on - strand at 730.133 kb on + strand at 730.305 kb on + strand at 730.305 kb on + strand at 730.625 kb on - strand, within EX28DRAFT_0732 at 730.625 kb on - strand, within EX28DRAFT_0732
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 727,923 - EX28DRAFT_0728 0.42 -0.0 727,923 - EX28DRAFT_0728 0.42 +0.7 727,944 + EX28DRAFT_0728 0.43 -0.5 728,169 + EX28DRAFT_0728 0.60 +0.3 728,196 - EX28DRAFT_0728 0.62 -0.0 728,199 - EX28DRAFT_0728 0.62 +1.9 728,199 - EX28DRAFT_0728 0.62 +0.3 728,246 + EX28DRAFT_0728 0.65 -0.0 728,246 + EX28DRAFT_0728 0.65 -1.0 728,247 - EX28DRAFT_0728 0.66 -0.4 728,406 - EX28DRAFT_0728 0.77 -0.3 728,430 + EX28DRAFT_0728 0.79 -0.0 728,430 + EX28DRAFT_0728 0.79 +0.3 728,471 - EX28DRAFT_0728 0.82 +0.2 728,493 - EX28DRAFT_0728 0.83 -0.2 728,649 - +0.3 728,669 + +0.3 728,669 + +0.4 728,670 - -0.3 728,677 + -0.0 728,722 - -0.8 728,763 + +2.3 728,788 + +0.2 728,849 - -0.0 728,875 + -0.5 728,875 + -0.9 728,897 + +1.5 728,967 + +0.3 728,994 + EX28DRAFT_0729 0.12 -0.6 728,998 + EX28DRAFT_0729 0.12 -0.5 729,032 - EX28DRAFT_0729 0.17 -0.6 729,042 + EX28DRAFT_0729 0.18 +0.8 729,043 - EX28DRAFT_0729 0.18 +1.4 729,054 + EX28DRAFT_0729 0.19 -0.4 729,077 + EX28DRAFT_0729 0.22 +0.5 729,257 + EX28DRAFT_0729 0.45 -1.9 729,257 + EX28DRAFT_0729 0.45 -1.6 729,281 + EX28DRAFT_0729 0.48 -0.3 729,281 + EX28DRAFT_0729 0.48 -0.4 729,282 - EX28DRAFT_0729 0.48 -0.1 729,297 - EX28DRAFT_0729 0.50 -0.1 729,556 - EX28DRAFT_0729 0.83 -0.4 729,570 + EX28DRAFT_0729 0.85 -0.4 729,571 - EX28DRAFT_0729 0.85 -0.2 729,575 - EX28DRAFT_0729 0.85 -0.1 729,592 - EX28DRAFT_0729 0.87 -0.3 729,620 + -0.7 729,620 + -0.8 729,621 - +1.9 729,650 - +0.3 729,704 + -0.0 729,872 - EX28DRAFT_0730 0.47 +1.2 729,875 + EX28DRAFT_0730 0.48 -1.5 729,975 + EX28DRAFT_0730 0.90 -2.4 730,022 + -0.5 730,034 - -0.1 730,034 - +0.8 730,100 - -0.5 730,133 + -1.2 730,305 + +0.4 730,305 + +0.5 730,625 - EX28DRAFT_0732 0.85 -0.3 730,625 - EX28DRAFT_0732 0.85 -0.5
Or see this region's nucleotide sequence