Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0675

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0673 and EX28DRAFT_0674 are separated by 17 nucleotidesEX28DRAFT_0674 and EX28DRAFT_0675 are separated by 10 nucleotidesEX28DRAFT_0675 and EX28DRAFT_0676 are separated by 48 nucleotides EX28DRAFT_0673: EX28DRAFT_0673 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 669,889 to 670,938 _0673 EX28DRAFT_0674: EX28DRAFT_0674 - Response regulator receiver domain, at 670,956 to 671,345 _0674 EX28DRAFT_0675: EX28DRAFT_0675 - Chemotaxis protein, at 671,356 to 672,000 _0675 EX28DRAFT_0676: EX28DRAFT_0676 - P pilus assembly protein, pilin FimA, at 672,049 to 673,215 _0676 Position (kb) 671 672 673Strain fitness (log2 ratio) -1 0 1at 670.409 kb on + strand, within EX28DRAFT_0673at 670.409 kb on + strand, within EX28DRAFT_0673at 670.409 kb on + strand, within EX28DRAFT_0673at 670.410 kb on - strand, within EX28DRAFT_0673at 670.410 kb on - strand, within EX28DRAFT_0673at 670.458 kb on + strand, within EX28DRAFT_0673at 670.459 kb on - strand, within EX28DRAFT_0673at 670.564 kb on + strand, within EX28DRAFT_0673at 670.564 kb on + strand, within EX28DRAFT_0673at 670.564 kb on + strand, within EX28DRAFT_0673at 670.564 kb on + strand, within EX28DRAFT_0673at 670.564 kb on + strand, within EX28DRAFT_0673at 670.565 kb on - strand, within EX28DRAFT_0673at 670.565 kb on - strand, within EX28DRAFT_0673at 670.565 kb on - strand, within EX28DRAFT_0673at 670.611 kb on + strand, within EX28DRAFT_0673at 670.886 kb on + strandat 670.887 kb on - strandat 670.928 kb on + strandat 670.929 kb on - strandat 670.932 kb on + strandat 670.932 kb on + strandat 670.932 kb on + strandat 670.933 kb on - strandat 670.933 kb on - strandat 670.933 kb on - strandat 670.933 kb on - strandat 671.117 kb on + strand, within EX28DRAFT_0674at 671.139 kb on - strand, within EX28DRAFT_0674at 671.271 kb on + strand, within EX28DRAFT_0674at 671.524 kb on + strand, within EX28DRAFT_0675at 671.525 kb on - strand, within EX28DRAFT_0675at 672.042 kb on - strandat 672.185 kb on + strand, within EX28DRAFT_0676at 672.185 kb on + strand, within EX28DRAFT_0676at 672.185 kb on + strand, within EX28DRAFT_0676at 672.186 kb on - strand, within EX28DRAFT_0676at 672.186 kb on - strand, within EX28DRAFT_0676at 672.186 kb on - strand, within EX28DRAFT_0676at 672.189 kb on + strand, within EX28DRAFT_0676at 672.189 kb on + strand, within EX28DRAFT_0676at 672.190 kb on - strand, within EX28DRAFT_0676at 672.224 kb on + strand, within EX28DRAFT_0676at 672.225 kb on - strand, within EX28DRAFT_0676at 672.225 kb on - strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.226 kb on + strand, within EX28DRAFT_0676at 672.227 kb on - strand, within EX28DRAFT_0676at 672.269 kb on + strand, within EX28DRAFT_0676at 672.269 kb on + strand, within EX28DRAFT_0676at 672.270 kb on - strand, within EX28DRAFT_0676at 672.345 kb on + strand, within EX28DRAFT_0676at 672.366 kb on + strand, within EX28DRAFT_0676at 672.366 kb on + strand, within EX28DRAFT_0676at 672.672 kb on + strand, within EX28DRAFT_0676at 672.679 kb on + strand, within EX28DRAFT_0676at 672.679 kb on + strand, within EX28DRAFT_0676at 672.680 kb on - strand, within EX28DRAFT_0676at 672.771 kb on + strand, within EX28DRAFT_0676at 672.771 kb on + strand, within EX28DRAFT_0676at 672.774 kb on + strand, within EX28DRAFT_0676at 672.774 kb on + strand, within EX28DRAFT_0676at 672.852 kb on - strand, within EX28DRAFT_0676at 672.941 kb on + strand, within EX28DRAFT_0676at 672.961 kb on + strand, within EX28DRAFT_0676at 672.963 kb on + strand, within EX28DRAFT_0676

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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670,409 + EX28DRAFT_0673 0.50 +1.4
670,409 + EX28DRAFT_0673 0.50 -0.1
670,409 + EX28DRAFT_0673 0.50 +0.5
670,410 - EX28DRAFT_0673 0.50 +0.3
670,410 - EX28DRAFT_0673 0.50 -0.2
670,458 + EX28DRAFT_0673 0.54 -0.2
670,459 - EX28DRAFT_0673 0.54 +0.4
670,564 + EX28DRAFT_0673 0.64 +1.5
670,564 + EX28DRAFT_0673 0.64 -0.2
670,564 + EX28DRAFT_0673 0.64 +0.2
670,564 + EX28DRAFT_0673 0.64 +0.2
670,564 + EX28DRAFT_0673 0.64 +0.3
670,565 - EX28DRAFT_0673 0.64 -0.2
670,565 - EX28DRAFT_0673 0.64 -0.4
670,565 - EX28DRAFT_0673 0.64 -0.1
670,611 + EX28DRAFT_0673 0.69 +0.8
670,886 + +1.0
670,887 - +0.4
670,928 + -0.1
670,929 - -0.0
670,932 + +0.1
670,932 + -0.1
670,932 + -0.5
670,933 - -1.3
670,933 - -0.2
670,933 - +0.4
670,933 - -0.4
671,117 + EX28DRAFT_0674 0.41 +0.1
671,139 - EX28DRAFT_0674 0.47 +0.5
671,271 + EX28DRAFT_0674 0.81 +0.3
671,524 + EX28DRAFT_0675 0.26 +0.2
671,525 - EX28DRAFT_0675 0.26 +0.4
672,042 - -0.3
672,185 + EX28DRAFT_0676 0.12 -0.2
672,185 + EX28DRAFT_0676 0.12 -0.2
672,185 + EX28DRAFT_0676 0.12 -0.9
672,186 - EX28DRAFT_0676 0.12 -0.1
672,186 - EX28DRAFT_0676 0.12 +0.2
672,186 - EX28DRAFT_0676 0.12 -0.0
672,189 + EX28DRAFT_0676 0.12 +0.8
672,189 + EX28DRAFT_0676 0.12 +0.6
672,190 - EX28DRAFT_0676 0.12 +0.4
672,224 + EX28DRAFT_0676 0.15 +0.2
672,225 - EX28DRAFT_0676 0.15 +0.3
672,225 - EX28DRAFT_0676 0.15 +0.5
672,226 + EX28DRAFT_0676 0.15 +0.3
672,226 + EX28DRAFT_0676 0.15 -0.0
672,226 + EX28DRAFT_0676 0.15 -0.9
672,226 + EX28DRAFT_0676 0.15 -0.3
672,227 - EX28DRAFT_0676 0.15 -0.0
672,269 + EX28DRAFT_0676 0.19 +0.8
672,269 + EX28DRAFT_0676 0.19 -0.6
672,270 - EX28DRAFT_0676 0.19 +0.9
672,345 + EX28DRAFT_0676 0.25 +0.4
672,366 + EX28DRAFT_0676 0.27 -0.1
672,366 + EX28DRAFT_0676 0.27 -0.3
672,672 + EX28DRAFT_0676 0.53 -1.3
672,679 + EX28DRAFT_0676 0.54 +0.5
672,679 + EX28DRAFT_0676 0.54 +0.6
672,680 - EX28DRAFT_0676 0.54 +0.0
672,771 + EX28DRAFT_0676 0.62 +0.2
672,771 + EX28DRAFT_0676 0.62 -0.1
672,774 + EX28DRAFT_0676 0.62 -0.2
672,774 + EX28DRAFT_0676 0.62 -0.8
672,852 - EX28DRAFT_0676 0.69 -0.6
672,941 + EX28DRAFT_0676 0.76 +0.3
672,961 + EX28DRAFT_0676 0.78 -0.2
672,963 + EX28DRAFT_0676 0.78 -0.4

Or see this region's nucleotide sequence