Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0668 and EX28DRAFT_0669 overlap by 4 nucleotides EX28DRAFT_0669 and EX28DRAFT_0670 are separated by 84 nucleotides
EX28DRAFT_0668: EX28DRAFT_0668 - P pilus assembly protein, porin PapC, at 662,265 to 664,649
_0668
EX28DRAFT_0669: EX28DRAFT_0669 - Uncharacterized secreted protein, at 664,646 to 665,608
_0669
EX28DRAFT_0670: EX28DRAFT_0670 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 665,693 to 667,360
_0670
Position (kb) 664
665
666 Strain fitness (log2 ratio) -1
0
1
2
3 at 663.918 kb on - strand, within EX28DRAFT_0668 at 663.918 kb on - strand, within EX28DRAFT_0668 at 663.920 kb on + strand, within EX28DRAFT_0668 at 663.921 kb on - strand, within EX28DRAFT_0668 at 663.924 kb on + strand, within EX28DRAFT_0668 at 664.010 kb on + strand, within EX28DRAFT_0668 at 664.070 kb on + strand, within EX28DRAFT_0668 at 664.140 kb on - strand, within EX28DRAFT_0668 at 664.201 kb on - strand, within EX28DRAFT_0668 at 664.230 kb on - strand, within EX28DRAFT_0668 at 664.575 kb on - strand at 664.605 kb on - strand at 664.851 kb on - strand, within EX28DRAFT_0669 at 664.984 kb on + strand, within EX28DRAFT_0669 at 664.985 kb on - strand, within EX28DRAFT_0669 at 664.991 kb on + strand, within EX28DRAFT_0669 at 665.054 kb on + strand, within EX28DRAFT_0669 at 665.126 kb on + strand, within EX28DRAFT_0669 at 665.203 kb on - strand, within EX28DRAFT_0669 at 665.203 kb on - strand, within EX28DRAFT_0669 at 665.206 kb on + strand, within EX28DRAFT_0669 at 665.206 kb on + strand, within EX28DRAFT_0669 at 665.274 kb on + strand, within EX28DRAFT_0669 at 665.317 kb on + strand, within EX28DRAFT_0669 at 665.334 kb on - strand, within EX28DRAFT_0669 at 665.336 kb on - strand, within EX28DRAFT_0669 at 665.412 kb on - strand, within EX28DRAFT_0669 at 665.420 kb on + strand, within EX28DRAFT_0669 at 665.420 kb on + strand, within EX28DRAFT_0669 at 665.420 kb on + strand, within EX28DRAFT_0669 at 665.421 kb on - strand, within EX28DRAFT_0669 at 665.421 kb on - strand, within EX28DRAFT_0669 at 665.421 kb on - strand, within EX28DRAFT_0669 at 665.422 kb on + strand, within EX28DRAFT_0669 at 665.423 kb on - strand, within EX28DRAFT_0669 at 665.423 kb on - strand, within EX28DRAFT_0669 at 665.573 kb on + strand at 665.574 kb on - strand at 665.636 kb on - strand at 665.671 kb on + strand at 665.672 kb on - strand at 665.672 kb on - strand at 665.672 kb on - strand at 665.672 kb on - strand at 665.672 kb on - strand at 665.672 kb on - strand at 665.678 kb on - strand at 665.692 kb on + strand at 665.692 kb on + strand at 665.693 kb on - strand at 665.693 kb on - strand at 665.693 kb on - strand at 665.693 kb on - strand at 665.693 kb on - strand at 665.693 kb on - strand at 665.791 kb on - strand at 666.037 kb on + strand, within EX28DRAFT_0670 at 666.080 kb on + strand, within EX28DRAFT_0670 at 666.460 kb on + strand, within EX28DRAFT_0670 at 666.460 kb on + strand, within EX28DRAFT_0670 at 666.460 kb on + strand, within EX28DRAFT_0670 at 666.518 kb on + strand, within EX28DRAFT_0670 at 666.518 kb on + strand, within EX28DRAFT_0670 at 666.518 kb on + strand, within EX28DRAFT_0670 at 666.518 kb on + strand, within EX28DRAFT_0670 at 666.518 kb on + strand, within EX28DRAFT_0670 at 666.519 kb on - strand, within EX28DRAFT_0670 at 666.519 kb on - strand, within EX28DRAFT_0670 at 666.519 kb on - strand, within EX28DRAFT_0670 at 666.519 kb on - strand, within EX28DRAFT_0670
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 663,918 - EX28DRAFT_0668 0.69 +0.8 663,918 - EX28DRAFT_0668 0.69 +0.5 663,920 + EX28DRAFT_0668 0.69 +0.0 663,921 - EX28DRAFT_0668 0.69 +0.2 663,924 + EX28DRAFT_0668 0.70 +0.4 664,010 + EX28DRAFT_0668 0.73 +0.5 664,070 + EX28DRAFT_0668 0.76 +0.0 664,140 - EX28DRAFT_0668 0.79 +0.7 664,201 - EX28DRAFT_0668 0.81 +0.4 664,230 - EX28DRAFT_0668 0.82 +0.2 664,575 - -1.7 664,605 - +0.5 664,851 - EX28DRAFT_0669 0.21 -0.2 664,984 + EX28DRAFT_0669 0.35 +1.2 664,985 - EX28DRAFT_0669 0.35 +0.3 664,991 + EX28DRAFT_0669 0.36 -0.5 665,054 + EX28DRAFT_0669 0.42 -0.5 665,126 + EX28DRAFT_0669 0.50 +0.2 665,203 - EX28DRAFT_0669 0.58 +0.2 665,203 - EX28DRAFT_0669 0.58 +1.8 665,206 + EX28DRAFT_0669 0.58 +0.7 665,206 + EX28DRAFT_0669 0.58 -0.5 665,274 + EX28DRAFT_0669 0.65 +0.9 665,317 + EX28DRAFT_0669 0.70 +0.2 665,334 - EX28DRAFT_0669 0.71 +0.2 665,336 - EX28DRAFT_0669 0.72 -0.1 665,412 - EX28DRAFT_0669 0.80 +0.0 665,420 + EX28DRAFT_0669 0.80 +0.1 665,420 + EX28DRAFT_0669 0.80 +2.8 665,420 + EX28DRAFT_0669 0.80 +0.4 665,421 - EX28DRAFT_0669 0.80 +0.2 665,421 - EX28DRAFT_0669 0.80 +0.8 665,421 - EX28DRAFT_0669 0.80 +0.5 665,422 + EX28DRAFT_0669 0.81 -0.0 665,423 - EX28DRAFT_0669 0.81 -0.2 665,423 - EX28DRAFT_0669 0.81 +0.9 665,573 + +0.5 665,574 - +0.5 665,636 - -0.5 665,671 + +0.5 665,672 - +0.4 665,672 - +0.1 665,672 - +0.1 665,672 - -0.2 665,672 - +0.8 665,672 - -0.8 665,678 - +0.4 665,692 + -0.2 665,692 + +0.1 665,693 - +0.8 665,693 - -0.1 665,693 - +0.3 665,693 - +0.2 665,693 - -0.3 665,693 - +0.1 665,791 - -0.7 666,037 + EX28DRAFT_0670 0.21 +0.5 666,080 + EX28DRAFT_0670 0.23 +0.1 666,460 + EX28DRAFT_0670 0.46 +0.4 666,460 + EX28DRAFT_0670 0.46 -0.7 666,460 + EX28DRAFT_0670 0.46 +0.4 666,518 + EX28DRAFT_0670 0.49 -0.1 666,518 + EX28DRAFT_0670 0.49 +0.3 666,518 + EX28DRAFT_0670 0.49 +0.8 666,518 + EX28DRAFT_0670 0.49 +0.2 666,518 + EX28DRAFT_0670 0.49 +0.3 666,519 - EX28DRAFT_0670 0.50 +0.8 666,519 - EX28DRAFT_0670 0.50 -0.0 666,519 - EX28DRAFT_0670 0.50 +0.3 666,519 - EX28DRAFT_0670 0.50 -1.4
Or see this region's nucleotide sequence