Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0619 and EX28DRAFT_0620 are separated by 48 nucleotides EX28DRAFT_0620 and EX28DRAFT_0621 are separated by 5 nucleotides EX28DRAFT_0621 and EX28DRAFT_0622 are separated by 21 nucleotides
EX28DRAFT_0619: EX28DRAFT_0619 - Glycosidases, at 616,566 to 618,056
_0619
EX28DRAFT_0620: EX28DRAFT_0620 - Flagellar protein FliT, at 618,105 to 618,479
_0620
EX28DRAFT_0621: EX28DRAFT_0621 - flagellar biosynthetic protein FliS, at 618,485 to 618,889
_0621
EX28DRAFT_0622: EX28DRAFT_0622 - Flagellar capping protein, at 618,911 to 620,335
_0622
Position (kb) 618
619 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 617.794 kb on - strand, within EX28DRAFT_0619 at 617.794 kb on - strand, within EX28DRAFT_0619 at 617.794 kb on - strand, within EX28DRAFT_0619 at 617.878 kb on + strand, within EX28DRAFT_0619 at 617.918 kb on + strand at 618.016 kb on + strand at 618.016 kb on + strand at 618.017 kb on - strand at 618.033 kb on + strand at 618.034 kb on - strand at 618.034 kb on - strand at 618.091 kb on + strand at 618.109 kb on - strand at 618.146 kb on + strand, within EX28DRAFT_0620 at 618.171 kb on - strand, within EX28DRAFT_0620 at 618.362 kb on - strand, within EX28DRAFT_0620 at 618.473 kb on + strand at 618.548 kb on + strand, within EX28DRAFT_0621 at 618.575 kb on + strand, within EX28DRAFT_0621 at 618.617 kb on - strand, within EX28DRAFT_0621 at 618.618 kb on + strand, within EX28DRAFT_0621 at 618.780 kb on + strand, within EX28DRAFT_0621 at 618.782 kb on - strand, within EX28DRAFT_0621 at 618.845 kb on + strand, within EX28DRAFT_0621 at 618.851 kb on + strand at 618.883 kb on + strand at 618.884 kb on - strand at 618.884 kb on - strand at 618.886 kb on - strand at 618.886 kb on - strand at 618.886 kb on - strand at 618.886 kb on - strand at 618.886 kb on - strand at 618.890 kb on - strand at 618.907 kb on - strand at 618.907 kb on - strand at 618.940 kb on - strand at 618.968 kb on + strand at 618.971 kb on + strand at 619.041 kb on + strand at 619.449 kb on + strand, within EX28DRAFT_0622 at 619.450 kb on - strand, within EX28DRAFT_0622 at 619.450 kb on - strand, within EX28DRAFT_0622 at 619.450 kb on - strand, within EX28DRAFT_0622 at 619.450 kb on - strand, within EX28DRAFT_0622 at 619.489 kb on - strand, within EX28DRAFT_0622
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 617,794 - EX28DRAFT_0619 0.82 +1.0 617,794 - EX28DRAFT_0619 0.82 +0.1 617,794 - EX28DRAFT_0619 0.82 +0.3 617,878 + EX28DRAFT_0619 0.88 -0.8 617,918 + +0.7 618,016 + +0.3 618,016 + -0.5 618,017 - +0.6 618,033 + +0.0 618,034 - +0.0 618,034 - +0.1 618,091 + -0.3 618,109 - -0.0 618,146 + EX28DRAFT_0620 0.11 +1.5 618,171 - EX28DRAFT_0620 0.18 -2.3 618,362 - EX28DRAFT_0620 0.69 +1.3 618,473 + -0.2 618,548 + EX28DRAFT_0621 0.16 -1.1 618,575 + EX28DRAFT_0621 0.22 +0.2 618,617 - EX28DRAFT_0621 0.33 -0.8 618,618 + EX28DRAFT_0621 0.33 -3.0 618,780 + EX28DRAFT_0621 0.73 +1.7 618,782 - EX28DRAFT_0621 0.73 +0.6 618,845 + EX28DRAFT_0621 0.89 -0.0 618,851 + -0.1 618,883 + +0.1 618,884 - -0.7 618,884 - +0.6 618,886 - +0.4 618,886 - +0.4 618,886 - -0.5 618,886 - +1.0 618,886 - +0.6 618,890 - -1.2 618,907 - +0.8 618,907 - -0.3 618,940 - +0.6 618,968 + -1.1 618,971 + +0.4 619,041 + -0.5 619,449 + EX28DRAFT_0622 0.38 +0.1 619,450 - EX28DRAFT_0622 0.38 +1.3 619,450 - EX28DRAFT_0622 0.38 +0.5 619,450 - EX28DRAFT_0622 0.38 +2.2 619,450 - EX28DRAFT_0622 0.38 -0.6 619,489 - EX28DRAFT_0622 0.41 +0.7
Or see this region's nucleotide sequence