Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0596

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0595 and EX28DRAFT_0596 are separated by 178 nucleotidesEX28DRAFT_0596 and EX28DRAFT_0597 are separated by 78 nucleotidesEX28DRAFT_0597 and EX28DRAFT_0598 overlap by 47 nucleotides EX28DRAFT_0595: EX28DRAFT_0595 - Predicted permease, DMT superfamily, at 598,125 to 599,039 _0595 EX28DRAFT_0596: EX28DRAFT_0596 - Uncharacterized protein conserved in bacteria, at 599,218 to 600,129 _0596 EX28DRAFT_0597: EX28DRAFT_0597 - Uncharacterized small protein, at 600,208 to 600,390 _0597 EX28DRAFT_0598: EX28DRAFT_0598 - diguanylate cyclase (GGDEF) domain, at 600,344 to 602,152 _0598 Position (kb) 599 600 601Strain fitness (log2 ratio) -1 0 1 2at 598.301 kb on - strand, within EX28DRAFT_0595at 598.349 kb on + strand, within EX28DRAFT_0595at 598.349 kb on + strand, within EX28DRAFT_0595at 598.350 kb on - strand, within EX28DRAFT_0595at 598.350 kb on - strand, within EX28DRAFT_0595at 598.351 kb on + strand, within EX28DRAFT_0595at 598.859 kb on + strand, within EX28DRAFT_0595at 598.859 kb on + strand, within EX28DRAFT_0595at 598.859 kb on + strand, within EX28DRAFT_0595at 598.859 kb on + strand, within EX28DRAFT_0595at 598.859 kb on + strand, within EX28DRAFT_0595at 598.860 kb on - strand, within EX28DRAFT_0595at 598.860 kb on - strand, within EX28DRAFT_0595at 598.860 kb on - strand, within EX28DRAFT_0595at 598.860 kb on - strand, within EX28DRAFT_0595at 598.860 kb on - strand, within EX28DRAFT_0595at 598.969 kb on + strandat 598.969 kb on + strandat 598.970 kb on - strandat 598.990 kb on + strandat 598.990 kb on + strandat 598.991 kb on - strandat 598.991 kb on - strandat 598.991 kb on - strandat 598.991 kb on - strandat 599.075 kb on + strandat 599.108 kb on + strandat 599.109 kb on - strandat 599.178 kb on + strandat 599.178 kb on + strandat 599.182 kb on - strandat 599.182 kb on - strandat 599.190 kb on - strandat 599.229 kb on + strandat 599.229 kb on + strandat 599.230 kb on - strandat 599.234 kb on + strandat 599.234 kb on + strandat 599.234 kb on + strandat 599.234 kb on + strandat 599.235 kb on - strandat 599.333 kb on + strand, within EX28DRAFT_0596at 599.334 kb on - strand, within EX28DRAFT_0596at 599.421 kb on + strand, within EX28DRAFT_0596at 599.422 kb on - strand, within EX28DRAFT_0596at 599.525 kb on + strand, within EX28DRAFT_0596at 599.526 kb on - strand, within EX28DRAFT_0596at 599.568 kb on + strand, within EX28DRAFT_0596at 599.568 kb on + strand, within EX28DRAFT_0596at 599.569 kb on - strand, within EX28DRAFT_0596at 599.780 kb on - strand, within EX28DRAFT_0596at 600.111 kb on - strandat 600.127 kb on + strandat 600.127 kb on + strandat 600.127 kb on + strandat 600.195 kb on - strandat 600.207 kb on + strandat 600.208 kb on - strandat 600.235 kb on - strand, within EX28DRAFT_0597at 600.241 kb on - strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.258 kb on + strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.259 kb on - strand, within EX28DRAFT_0597at 600.388 kb on + strandat 600.389 kb on - strandat 600.396 kb on + strandat 600.431 kb on + strandat 600.486 kb on + strandat 600.487 kb on - strandat 600.567 kb on + strand, within EX28DRAFT_0598at 600.617 kb on + strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.618 kb on - strand, within EX28DRAFT_0598at 600.634 kb on + strand, within EX28DRAFT_0598at 600.816 kb on + strand, within EX28DRAFT_0598at 600.989 kb on + strand, within EX28DRAFT_0598at 600.990 kb on - strand, within EX28DRAFT_0598at 600.990 kb on - strand, within EX28DRAFT_0598at 601.049 kb on - strand, within EX28DRAFT_0598at 601.061 kb on + strand, within EX28DRAFT_0598

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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598,301 - EX28DRAFT_0595 0.19 +0.3
598,349 + EX28DRAFT_0595 0.24 +0.1
598,349 + EX28DRAFT_0595 0.24 +0.2
598,350 - EX28DRAFT_0595 0.25 +0.2
598,350 - EX28DRAFT_0595 0.25 +0.0
598,351 + EX28DRAFT_0595 0.25 -0.5
598,859 + EX28DRAFT_0595 0.80 -0.1
598,859 + EX28DRAFT_0595 0.80 -0.9
598,859 + EX28DRAFT_0595 0.80 -0.6
598,859 + EX28DRAFT_0595 0.80 +0.5
598,859 + EX28DRAFT_0595 0.80 +0.6
598,860 - EX28DRAFT_0595 0.80 +0.4
598,860 - EX28DRAFT_0595 0.80 -1.4
598,860 - EX28DRAFT_0595 0.80 -0.1
598,860 - EX28DRAFT_0595 0.80 -0.6
598,860 - EX28DRAFT_0595 0.80 -0.2
598,969 + -0.9
598,969 + -0.3
598,970 - +1.2
598,990 + -0.4
598,990 + +0.4
598,991 - -0.0
598,991 - -0.3
598,991 - +2.4
598,991 - +0.2
599,075 + +0.6
599,108 + +1.0
599,109 - +0.1
599,178 + -0.2
599,178 + +0.1
599,182 - -0.0
599,182 - -0.3
599,190 - +0.1
599,229 + +0.1
599,229 + +0.0
599,230 - -0.5
599,234 + +0.2
599,234 + +0.3
599,234 + -0.0
599,234 + -0.4
599,235 - -0.3
599,333 + EX28DRAFT_0596 0.13 -0.8
599,334 - EX28DRAFT_0596 0.13 +0.5
599,421 + EX28DRAFT_0596 0.22 +0.8
599,422 - EX28DRAFT_0596 0.22 +0.2
599,525 + EX28DRAFT_0596 0.34 +0.3
599,526 - EX28DRAFT_0596 0.34 +1.0
599,568 + EX28DRAFT_0596 0.38 +0.4
599,568 + EX28DRAFT_0596 0.38 +0.3
599,569 - EX28DRAFT_0596 0.38 +0.0
599,780 - EX28DRAFT_0596 0.62 -0.3
600,111 - -0.8
600,127 + +0.6
600,127 + +0.3
600,127 + -1.4
600,195 - +0.1
600,207 + +0.6
600,208 - +0.3
600,235 - EX28DRAFT_0597 0.15 -0.2
600,241 - EX28DRAFT_0597 0.18 +0.0
600,258 + EX28DRAFT_0597 0.27 -1.2
600,258 + EX28DRAFT_0597 0.27 -0.3
600,258 + EX28DRAFT_0597 0.27 -0.0
600,259 - EX28DRAFT_0597 0.28 -0.9
600,259 - EX28DRAFT_0597 0.28 -0.3
600,259 - EX28DRAFT_0597 0.28 -0.6
600,259 - EX28DRAFT_0597 0.28 +0.1
600,388 + +0.6
600,389 - -0.4
600,396 + +0.9
600,431 + -0.3
600,486 + +0.8
600,487 - +0.0
600,567 + EX28DRAFT_0598 0.12 -0.3
600,617 + EX28DRAFT_0598 0.15 -0.1
600,618 - EX28DRAFT_0598 0.15 -0.5
600,618 - EX28DRAFT_0598 0.15 +0.0
600,618 - EX28DRAFT_0598 0.15 -0.8
600,634 + EX28DRAFT_0598 0.16 +0.9
600,816 + EX28DRAFT_0598 0.26 -0.1
600,989 + EX28DRAFT_0598 0.36 +0.2
600,990 - EX28DRAFT_0598 0.36 +1.3
600,990 - EX28DRAFT_0598 0.36 -1.3
601,049 - EX28DRAFT_0598 0.39 +0.6
601,061 + EX28DRAFT_0598 0.40 +1.3

Or see this region's nucleotide sequence