Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0586 and EX28DRAFT_0587 are separated by 94 nucleotides EX28DRAFT_0587 and EX28DRAFT_0588 overlap by 20 nucleotides EX28DRAFT_0588 and EX28DRAFT_0589 overlap by 4 nucleotides
EX28DRAFT_0586: EX28DRAFT_0586 - flavocytochrome c, at 586,840 to 589,620
_0586
EX28DRAFT_0587: EX28DRAFT_0587 - Membrane-associated lipoprotein involved in thiamine biosynthesis, at 589,715 to 590,677
_0587
EX28DRAFT_0588: EX28DRAFT_0588 - Response regulator of citrate/malate metabolism, at 590,658 to 591,377
_0588
EX28DRAFT_0589: EX28DRAFT_0589 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 591,374 to 592,990
_0589
Position (kb) 589
590
591 Strain fitness (log2 ratio) -2
-1
0
1
2 at 588.878 kb on - strand, within EX28DRAFT_0586 at 589.021 kb on + strand, within EX28DRAFT_0586 at 589.088 kb on - strand, within EX28DRAFT_0586 at 589.148 kb on - strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.153 kb on + strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.154 kb on - strand, within EX28DRAFT_0586 at 589.175 kb on + strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.176 kb on - strand, within EX28DRAFT_0586 at 589.205 kb on - strand, within EX28DRAFT_0586 at 589.561 kb on - strand at 589.696 kb on - strand at 589.736 kb on + strand at 589.995 kb on + strand, within EX28DRAFT_0587 at 590.177 kb on + strand, within EX28DRAFT_0587 at 590.178 kb on - strand, within EX28DRAFT_0587 at 590.201 kb on + strand, within EX28DRAFT_0587 at 590.202 kb on - strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.413 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.516 kb on + strand, within EX28DRAFT_0587 at 590.981 kb on - strand, within EX28DRAFT_0588 at 590.983 kb on + strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 590.984 kb on - strand, within EX28DRAFT_0588 at 591.071 kb on - strand, within EX28DRAFT_0588 at 591.203 kb on + strand, within EX28DRAFT_0588 at 591.203 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.205 kb on + strand, within EX28DRAFT_0588 at 591.206 kb on - strand, within EX28DRAFT_0588 at 591.246 kb on - strand, within EX28DRAFT_0588 at 591.249 kb on - strand, within EX28DRAFT_0588 at 591.249 kb on - strand, within EX28DRAFT_0588 at 591.249 kb on - strand, within EX28DRAFT_0588 at 591.296 kb on + strand, within EX28DRAFT_0588 at 591.319 kb on + strand at 591.319 kb on + strand at 591.320 kb on - strand at 591.363 kb on + strand at 591.363 kb on + strand at 591.364 kb on - strand at 591.367 kb on - strand at 591.373 kb on - strand at 591.373 kb on - strand at 591.373 kb on - strand at 591.382 kb on + strand at 591.425 kb on - strand at 591.539 kb on - strand, within EX28DRAFT_0589 at 591.545 kb on - strand, within EX28DRAFT_0589 at 591.616 kb on - strand, within EX28DRAFT_0589
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 588,878 - EX28DRAFT_0586 0.73 +0.2 589,021 + EX28DRAFT_0586 0.78 -0.3 589,088 - EX28DRAFT_0586 0.81 -0.0 589,148 - EX28DRAFT_0586 0.83 +0.2 589,153 + EX28DRAFT_0586 0.83 +0.1 589,153 + EX28DRAFT_0586 0.83 -0.5 589,153 + EX28DRAFT_0586 0.83 +0.1 589,153 + EX28DRAFT_0586 0.83 -0.6 589,153 + EX28DRAFT_0586 0.83 +0.5 589,153 + EX28DRAFT_0586 0.83 +0.2 589,154 - EX28DRAFT_0586 0.83 +0.2 589,154 - EX28DRAFT_0586 0.83 +0.4 589,154 - EX28DRAFT_0586 0.83 -0.1 589,154 - EX28DRAFT_0586 0.83 -0.0 589,175 + EX28DRAFT_0586 0.84 -0.5 589,176 - EX28DRAFT_0586 0.84 -1.1 589,176 - EX28DRAFT_0586 0.84 +0.1 589,176 - EX28DRAFT_0586 0.84 +0.1 589,205 - EX28DRAFT_0586 0.85 -1.1 589,561 - -0.3 589,696 - +0.6 589,736 + +1.3 589,995 + EX28DRAFT_0587 0.29 +0.2 590,177 + EX28DRAFT_0587 0.48 -0.6 590,178 - EX28DRAFT_0587 0.48 -1.0 590,201 + EX28DRAFT_0587 0.50 -0.7 590,202 - EX28DRAFT_0587 0.51 -0.1 590,413 + EX28DRAFT_0587 0.72 +0.4 590,413 + EX28DRAFT_0587 0.72 +0.2 590,413 + EX28DRAFT_0587 0.72 +0.7 590,516 + EX28DRAFT_0587 0.83 -0.6 590,516 + EX28DRAFT_0587 0.83 -0.2 590,516 + EX28DRAFT_0587 0.83 +0.1 590,981 - EX28DRAFT_0588 0.45 -0.0 590,983 + EX28DRAFT_0588 0.45 +0.9 590,984 - EX28DRAFT_0588 0.45 -0.5 590,984 - EX28DRAFT_0588 0.45 -1.3 590,984 - EX28DRAFT_0588 0.45 +0.3 590,984 - EX28DRAFT_0588 0.45 +0.4 591,071 - EX28DRAFT_0588 0.57 +0.8 591,203 + EX28DRAFT_0588 0.76 -0.0 591,203 + EX28DRAFT_0588 0.76 +0.1 591,205 + EX28DRAFT_0588 0.76 -0.6 591,205 + EX28DRAFT_0588 0.76 -0.9 591,205 + EX28DRAFT_0588 0.76 +0.3 591,205 + EX28DRAFT_0588 0.76 +2.6 591,205 + EX28DRAFT_0588 0.76 +0.2 591,206 - EX28DRAFT_0588 0.76 +0.8 591,246 - EX28DRAFT_0588 0.82 +0.6 591,249 - EX28DRAFT_0588 0.82 +1.2 591,249 - EX28DRAFT_0588 0.82 -0.5 591,249 - EX28DRAFT_0588 0.82 -0.8 591,296 + EX28DRAFT_0588 0.89 +0.7 591,319 + -0.1 591,319 + -1.0 591,320 - +0.1 591,363 + -0.7 591,363 + +0.0 591,364 - +0.2 591,367 - -2.2 591,373 - -0.4 591,373 - -0.1 591,373 - +0.1 591,382 + -0.3 591,425 - +1.3 591,539 - EX28DRAFT_0589 0.10 +0.3 591,545 - EX28DRAFT_0589 0.11 -0.2 591,616 - EX28DRAFT_0589 0.15 +0.8
Or see this region's nucleotide sequence