Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0392

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0390 and EX28DRAFT_0391 are separated by 117 nucleotidesEX28DRAFT_0391 and EX28DRAFT_0392 are separated by 1 nucleotidesEX28DRAFT_0392 and EX28DRAFT_0393 overlap by 4 nucleotides EX28DRAFT_0390: EX28DRAFT_0390 - mannonate dehydratase, at 364,295 to 365,485 _0390 EX28DRAFT_0391: EX28DRAFT_0391 - elongation factor P-like protein YeiP, at 365,603 to 366,404 _0391 EX28DRAFT_0392: EX28DRAFT_0392 - hypothetical protein, at 366,406 to 366,594 _0392 EX28DRAFT_0393: EX28DRAFT_0393 - sugar efflux transporter, at 366,591 to 367,772 _0393 Position (kb) 366 367Strain fitness (log2 ratio) -2 -1 0 1at 365.483 kb on + strandat 365.622 kb on + strandat 365.623 kb on - strandat 365.623 kb on - strandat 365.670 kb on + strandat 365.671 kb on - strandat 365.908 kb on - strand, within EX28DRAFT_0391at 365.931 kb on + strand, within EX28DRAFT_0391at 365.931 kb on + strand, within EX28DRAFT_0391at 365.949 kb on + strand, within EX28DRAFT_0391at 366.132 kb on + strand, within EX28DRAFT_0391at 366.133 kb on - strand, within EX28DRAFT_0391at 366.145 kb on + strand, within EX28DRAFT_0391at 366.272 kb on - strand, within EX28DRAFT_0391at 366.286 kb on - strand, within EX28DRAFT_0391at 366.373 kb on - strandat 366.560 kb on - strand, within EX28DRAFT_0392at 366.593 kb on - strandat 366.603 kb on - strandat 366.603 kb on - strandat 366.633 kb on - strandat 366.633 kb on - strandat 366.633 kb on - strandat 366.668 kb on - strandat 366.731 kb on + strand, within EX28DRAFT_0393at 366.734 kb on + strand, within EX28DRAFT_0393at 366.734 kb on + strand, within EX28DRAFT_0393at 366.735 kb on - strand, within EX28DRAFT_0393at 366.738 kb on - strand, within EX28DRAFT_0393at 366.738 kb on - strand, within EX28DRAFT_0393at 366.739 kb on + strand, within EX28DRAFT_0393at 366.740 kb on - strand, within EX28DRAFT_0393at 366.820 kb on + strand, within EX28DRAFT_0393at 366.820 kb on + strand, within EX28DRAFT_0393at 366.820 kb on + strand, within EX28DRAFT_0393at 366.820 kb on + strand, within EX28DRAFT_0393at 366.820 kb on + strand, within EX28DRAFT_0393at 366.820 kb on + strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.821 kb on - strand, within EX28DRAFT_0393at 366.840 kb on + strand, within EX28DRAFT_0393at 366.864 kb on - strand, within EX28DRAFT_0393at 366.864 kb on - strand, within EX28DRAFT_0393at 366.864 kb on - strand, within EX28DRAFT_0393at 366.864 kb on - strand, within EX28DRAFT_0393at 366.886 kb on + strand, within EX28DRAFT_0393at 366.886 kb on + strand, within EX28DRAFT_0393at 366.886 kb on + strand, within EX28DRAFT_0393at 366.887 kb on - strand, within EX28DRAFT_0393at 366.887 kb on - strand, within EX28DRAFT_0393at 366.887 kb on - strand, within EX28DRAFT_0393at 366.922 kb on - strand, within EX28DRAFT_0393at 366.949 kb on + strand, within EX28DRAFT_0393at 367.046 kb on + strand, within EX28DRAFT_0393at 367.047 kb on - strand, within EX28DRAFT_0393at 367.059 kb on - strand, within EX28DRAFT_0393at 367.067 kb on + strand, within EX28DRAFT_0393at 367.067 kb on + strand, within EX28DRAFT_0393at 367.068 kb on - strand, within EX28DRAFT_0393at 367.068 kb on - strand, within EX28DRAFT_0393at 367.068 kb on - strand, within EX28DRAFT_0393at 367.069 kb on + strand, within EX28DRAFT_0393at 367.070 kb on - strand, within EX28DRAFT_0393at 367.070 kb on - strand, within EX28DRAFT_0393at 367.070 kb on - strand, within EX28DRAFT_0393at 367.070 kb on - strand, within EX28DRAFT_0393at 367.246 kb on + strand, within EX28DRAFT_0393at 367.247 kb on - strand, within EX28DRAFT_0393at 367.434 kb on + strand, within EX28DRAFT_0393at 367.435 kb on - strand, within EX28DRAFT_0393at 367.459 kb on + strand, within EX28DRAFT_0393at 367.460 kb on - strand, within EX28DRAFT_0393at 367.529 kb on + strand, within EX28DRAFT_0393

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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365,483 + -0.2
365,622 + +0.4
365,623 - -0.3
365,623 - -1.1
365,670 + +0.3
365,671 - -0.7
365,908 - EX28DRAFT_0391 0.38 -0.3
365,931 + EX28DRAFT_0391 0.41 -0.1
365,931 + EX28DRAFT_0391 0.41 -0.2
365,949 + EX28DRAFT_0391 0.43 -1.3
366,132 + EX28DRAFT_0391 0.66 -0.1
366,133 - EX28DRAFT_0391 0.66 -0.1
366,145 + EX28DRAFT_0391 0.68 -2.0
366,272 - EX28DRAFT_0391 0.83 -0.6
366,286 - EX28DRAFT_0391 0.85 +1.0
366,373 - +0.1
366,560 - EX28DRAFT_0392 0.81 +0.8
366,593 - -0.6
366,603 - +0.7
366,603 - -0.6
366,633 - +0.1
366,633 - -0.4
366,633 - +0.1
366,668 - -0.0
366,731 + EX28DRAFT_0393 0.12 +0.2
366,734 + EX28DRAFT_0393 0.12 +0.6
366,734 + EX28DRAFT_0393 0.12 +0.2
366,735 - EX28DRAFT_0393 0.12 -0.2
366,738 - EX28DRAFT_0393 0.12 -0.3
366,738 - EX28DRAFT_0393 0.12 -1.0
366,739 + EX28DRAFT_0393 0.13 +0.8
366,740 - EX28DRAFT_0393 0.13 +0.1
366,820 + EX28DRAFT_0393 0.19 +0.1
366,820 + EX28DRAFT_0393 0.19 -0.2
366,820 + EX28DRAFT_0393 0.19 +1.0
366,820 + EX28DRAFT_0393 0.19 +0.1
366,820 + EX28DRAFT_0393 0.19 -0.4
366,820 + EX28DRAFT_0393 0.19 +1.3
366,821 - EX28DRAFT_0393 0.19 -0.2
366,821 - EX28DRAFT_0393 0.19 +0.3
366,821 - EX28DRAFT_0393 0.19 +1.0
366,821 - EX28DRAFT_0393 0.19 -0.5
366,821 - EX28DRAFT_0393 0.19 +0.9
366,821 - EX28DRAFT_0393 0.19 +0.2
366,821 - EX28DRAFT_0393 0.19 +0.0
366,840 + EX28DRAFT_0393 0.21 +0.1
366,864 - EX28DRAFT_0393 0.23 +0.1
366,864 - EX28DRAFT_0393 0.23 +0.0
366,864 - EX28DRAFT_0393 0.23 -0.0
366,864 - EX28DRAFT_0393 0.23 -0.4
366,886 + EX28DRAFT_0393 0.25 +1.7
366,886 + EX28DRAFT_0393 0.25 +0.0
366,886 + EX28DRAFT_0393 0.25 +0.2
366,887 - EX28DRAFT_0393 0.25 +1.5
366,887 - EX28DRAFT_0393 0.25 -0.6
366,887 - EX28DRAFT_0393 0.25 +0.0
366,922 - EX28DRAFT_0393 0.28 +0.3
366,949 + EX28DRAFT_0393 0.30 +0.4
367,046 + EX28DRAFT_0393 0.38 +0.4
367,047 - EX28DRAFT_0393 0.39 -1.6
367,059 - EX28DRAFT_0393 0.40 -0.2
367,067 + EX28DRAFT_0393 0.40 -0.0
367,067 + EX28DRAFT_0393 0.40 -0.4
367,068 - EX28DRAFT_0393 0.40 -0.2
367,068 - EX28DRAFT_0393 0.40 +0.1
367,068 - EX28DRAFT_0393 0.40 +0.1
367,069 + EX28DRAFT_0393 0.40 +0.2
367,070 - EX28DRAFT_0393 0.41 -0.2
367,070 - EX28DRAFT_0393 0.41 +0.0
367,070 - EX28DRAFT_0393 0.41 -0.3
367,070 - EX28DRAFT_0393 0.41 +0.1
367,246 + EX28DRAFT_0393 0.55 -0.4
367,247 - EX28DRAFT_0393 0.55 +0.2
367,434 + EX28DRAFT_0393 0.71 -1.9
367,435 - EX28DRAFT_0393 0.71 -0.5
367,459 + EX28DRAFT_0393 0.73 +0.3
367,460 - EX28DRAFT_0393 0.74 +0.0
367,529 + EX28DRAFT_0393 0.79 +0.1

Or see this region's nucleotide sequence