Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0275 and EX28DRAFT_0276 are separated by 2 nucleotides EX28DRAFT_0276 and EX28DRAFT_0277 overlap by 1 nucleotides EX28DRAFT_0277 and EX28DRAFT_0278 overlap by 1 nucleotides
EX28DRAFT_0275: EX28DRAFT_0275 - chorismate synthase (EC 4.2.3.5), at 237,184 to 238,269
_0275
EX28DRAFT_0276: EX28DRAFT_0276 - Murein endopeptidase, at 238,272 to 239,096
_0276
EX28DRAFT_0277: EX28DRAFT_0277 - Predicted permeases, at 239,096 to 239,905
_0277
EX28DRAFT_0278: EX28DRAFT_0278 - Uncharacterized protein conserved in bacteria, at 239,905 to 240,450
_0278
Position (kb) 238
239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 237.848 kb on + strand, within EX28DRAFT_0275 at 238.403 kb on + strand, within EX28DRAFT_0276 at 238.440 kb on - strand, within EX28DRAFT_0276 at 238.444 kb on - strand, within EX28DRAFT_0276 at 238.474 kb on - strand, within EX28DRAFT_0276 at 238.529 kb on + strand, within EX28DRAFT_0276 at 238.529 kb on + strand, within EX28DRAFT_0276 at 238.781 kb on + strand, within EX28DRAFT_0276 at 239.089 kb on + strand at 239.095 kb on - strand at 239.120 kb on - strand at 239.176 kb on + strand at 239.306 kb on + strand, within EX28DRAFT_0277 at 239.320 kb on + strand, within EX28DRAFT_0277 at 239.462 kb on + strand, within EX28DRAFT_0277 at 239.806 kb on + strand, within EX28DRAFT_0277 at 239.903 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.913 kb on + strand at 239.924 kb on - strand at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.007 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.034 kb on + strand, within EX28DRAFT_0278 at 240.036 kb on + strand, within EX28DRAFT_0278 at 240.065 kb on - strand, within EX28DRAFT_0278
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 237,848 + EX28DRAFT_0275 0.61 -3.2 238,403 + EX28DRAFT_0276 0.16 -0.2 238,440 - EX28DRAFT_0276 0.20 +0.3 238,444 - EX28DRAFT_0276 0.21 -0.8 238,474 - EX28DRAFT_0276 0.24 -1.0 238,529 + EX28DRAFT_0276 0.31 -0.1 238,529 + EX28DRAFT_0276 0.31 +0.0 238,781 + EX28DRAFT_0276 0.62 -0.2 239,089 + +0.1 239,095 - -0.3 239,120 - -0.4 239,176 + -0.0 239,306 + EX28DRAFT_0277 0.26 -0.4 239,320 + EX28DRAFT_0277 0.28 +0.1 239,462 + EX28DRAFT_0277 0.45 -2.4 239,806 + EX28DRAFT_0277 0.88 +1.4 239,903 + +0.2 239,913 + +0.4 239,913 + +1.9 239,913 + -0.0 239,924 - +0.2 240,007 + EX28DRAFT_0278 0.19 -0.6 240,007 + EX28DRAFT_0278 0.19 -0.4 240,034 + EX28DRAFT_0278 0.24 -0.2 240,034 + EX28DRAFT_0278 0.24 -0.7 240,034 + EX28DRAFT_0278 0.24 +0.8 240,036 + EX28DRAFT_0278 0.24 -0.0 240,065 - EX28DRAFT_0278 0.29 -0.1
Or see this region's nucleotide sequence