Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0237 and EX28DRAFT_0238 are separated by 35 nucleotides EX28DRAFT_0238 and EX28DRAFT_0239 are separated by 3 nucleotides EX28DRAFT_0239 and EX28DRAFT_0240 are separated by 386 nucleotides
EX28DRAFT_0237: EX28DRAFT_0237 - glucokinase, proteobacterial type, at 189,288 to 190,253
_0237
EX28DRAFT_0238: EX28DRAFT_0238 - two component transcriptional regulator, LytTR family, at 190,289 to 191,014
_0238
EX28DRAFT_0239: EX28DRAFT_0239 - Putative regulator of cell autolysis, at 191,018 to 192,724
_0239
EX28DRAFT_0240: EX28DRAFT_0240 - Aspartate/tyrosine/aromatic aminotransferase, at 193,111 to 194,349
_0240
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.062 kb on + strand, within EX28DRAFT_0237 at 190.063 kb on - strand, within EX28DRAFT_0237 at 190.065 kb on - strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.155 kb on + strand, within EX28DRAFT_0237 at 190.156 kb on - strand, within EX28DRAFT_0237 at 190.374 kb on + strand, within EX28DRAFT_0238 at 190.375 kb on - strand, within EX28DRAFT_0238 at 190.375 kb on - strand, within EX28DRAFT_0238 at 190.416 kb on - strand, within EX28DRAFT_0238 at 190.503 kb on + strand, within EX28DRAFT_0238 at 190.504 kb on - strand, within EX28DRAFT_0238 at 190.557 kb on + strand, within EX28DRAFT_0238 at 190.557 kb on + strand, within EX28DRAFT_0238 at 190.558 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.608 kb on - strand, within EX28DRAFT_0238 at 190.720 kb on + strand, within EX28DRAFT_0238 at 190.720 kb on + strand, within EX28DRAFT_0238 at 190.722 kb on + strand, within EX28DRAFT_0238 at 190.786 kb on + strand, within EX28DRAFT_0238 at 190.795 kb on + strand, within EX28DRAFT_0238 at 190.829 kb on + strand, within EX28DRAFT_0238 at 190.856 kb on - strand, within EX28DRAFT_0238 at 190.997 kb on + strand at 190.997 kb on + strand at 190.998 kb on - strand at 190.998 kb on - strand at 191.005 kb on + strand at 191.036 kb on + strand at 191.079 kb on + strand at 191.400 kb on + strand, within EX28DRAFT_0239 at 191.401 kb on - strand, within EX28DRAFT_0239 at 191.448 kb on + strand, within EX28DRAFT_0239 at 191.448 kb on + strand, within EX28DRAFT_0239 at 191.448 kb on + strand, within EX28DRAFT_0239 at 191.449 kb on - strand, within EX28DRAFT_0239 at 191.464 kb on - strand, within EX28DRAFT_0239 at 191.464 kb on - strand, within EX28DRAFT_0239 at 191.621 kb on - strand, within EX28DRAFT_0239 at 191.654 kb on - strand, within EX28DRAFT_0239 at 191.654 kb on - strand, within EX28DRAFT_0239 at 191.654 kb on - strand, within EX28DRAFT_0239 at 191.708 kb on - strand, within EX28DRAFT_0239 at 191.708 kb on - strand, within EX28DRAFT_0239 at 191.916 kb on - strand, within EX28DRAFT_0239 at 191.937 kb on + strand, within EX28DRAFT_0239 at 191.938 kb on - strand, within EX28DRAFT_0239 at 191.962 kb on - strand, within EX28DRAFT_0239 at 191.981 kb on - strand, within EX28DRAFT_0239 at 191.981 kb on - strand, within EX28DRAFT_0239 at 192.528 kb on - strand, within EX28DRAFT_0239 at 192.713 kb on + strand at 192.713 kb on + strand at 192.728 kb on + strand at 192.729 kb on - strand at 192.901 kb on - strand at 192.916 kb on - strand at 193.166 kb on - strand at 193.176 kb on + strand at 193.269 kb on + strand, within EX28DRAFT_0240 at 193.270 kb on - strand, within EX28DRAFT_0240 at 193.292 kb on + strand, within EX28DRAFT_0240 at 193.347 kb on - strand, within EX28DRAFT_0240 at 193.520 kb on - strand, within EX28DRAFT_0240
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 190,062 + EX28DRAFT_0237 0.80 +0.7 190,063 - EX28DRAFT_0237 0.80 +0.6 190,065 - EX28DRAFT_0237 0.80 +0.0 190,155 + EX28DRAFT_0237 0.90 -0.2 190,155 + EX28DRAFT_0237 0.90 -0.1 190,155 + EX28DRAFT_0237 0.90 -1.0 190,156 - EX28DRAFT_0237 0.90 -1.1 190,374 + EX28DRAFT_0238 0.12 -1.0 190,375 - EX28DRAFT_0238 0.12 -0.1 190,375 - EX28DRAFT_0238 0.12 +0.3 190,416 - EX28DRAFT_0238 0.17 +1.0 190,503 + EX28DRAFT_0238 0.29 -0.0 190,504 - EX28DRAFT_0238 0.30 +0.6 190,557 + EX28DRAFT_0238 0.37 -0.2 190,557 + EX28DRAFT_0238 0.37 +0.5 190,558 - EX28DRAFT_0238 0.37 +0.2 190,608 - EX28DRAFT_0238 0.44 +1.8 190,608 - EX28DRAFT_0238 0.44 +0.3 190,608 - EX28DRAFT_0238 0.44 -0.4 190,720 + EX28DRAFT_0238 0.59 -0.2 190,720 + EX28DRAFT_0238 0.59 +0.1 190,722 + EX28DRAFT_0238 0.60 +2.7 190,786 + EX28DRAFT_0238 0.68 +0.4 190,795 + EX28DRAFT_0238 0.70 -0.0 190,829 + EX28DRAFT_0238 0.74 -0.1 190,856 - EX28DRAFT_0238 0.78 +0.3 190,997 + +0.1 190,997 + -1.2 190,998 - -0.4 190,998 - +0.4 191,005 + -0.2 191,036 + +0.1 191,079 + +0.1 191,400 + EX28DRAFT_0239 0.22 +0.1 191,401 - EX28DRAFT_0239 0.22 -0.4 191,448 + EX28DRAFT_0239 0.25 +0.6 191,448 + EX28DRAFT_0239 0.25 +0.9 191,448 + EX28DRAFT_0239 0.25 +0.1 191,449 - EX28DRAFT_0239 0.25 +0.0 191,464 - EX28DRAFT_0239 0.26 +0.2 191,464 - EX28DRAFT_0239 0.26 +0.7 191,621 - EX28DRAFT_0239 0.35 -0.6 191,654 - EX28DRAFT_0239 0.37 -0.6 191,654 - EX28DRAFT_0239 0.37 +0.2 191,654 - EX28DRAFT_0239 0.37 +0.4 191,708 - EX28DRAFT_0239 0.40 +0.5 191,708 - EX28DRAFT_0239 0.40 -0.9 191,916 - EX28DRAFT_0239 0.53 +0.1 191,937 + EX28DRAFT_0239 0.54 +0.4 191,938 - EX28DRAFT_0239 0.54 +0.0 191,962 - EX28DRAFT_0239 0.55 +0.4 191,981 - EX28DRAFT_0239 0.56 -2.6 191,981 - EX28DRAFT_0239 0.56 +1.7 192,528 - EX28DRAFT_0239 0.88 +0.2 192,713 + -0.9 192,713 + +0.3 192,728 + -0.4 192,729 - -2.2 192,901 - +0.3 192,916 - +0.5 193,166 - -0.3 193,176 + +1.0 193,269 + EX28DRAFT_0240 0.13 +0.2 193,270 - EX28DRAFT_0240 0.13 -0.2 193,292 + EX28DRAFT_0240 0.15 +0.5 193,347 - EX28DRAFT_0240 0.19 -0.4 193,520 - EX28DRAFT_0240 0.33 -2.0
Or see this region's nucleotide sequence