Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0172

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0171 and EX28DRAFT_0172 are separated by 81 nucleotidesEX28DRAFT_0172 and EX28DRAFT_0173 are separated by 41 nucleotides EX28DRAFT_0171: EX28DRAFT_0171 - uracil-xanthine permease, at 120,367 to 121,656 _0171 EX28DRAFT_0172: EX28DRAFT_0172 - regulatory inactivation of DnaA Hda protein, at 121,738 to 122,454 _0172 EX28DRAFT_0173: EX28DRAFT_0173 - Leucyl aminopeptidase, at 122,496 to 123,914 _0173 Position (kb) 121 122 123Strain fitness (log2 ratio) -2 -1 0 1 2at 120.792 kb on + strand, within EX28DRAFT_0171at 120.803 kb on + strand, within EX28DRAFT_0171at 120.804 kb on - strand, within EX28DRAFT_0171at 120.844 kb on - strand, within EX28DRAFT_0171at 121.021 kb on + strand, within EX28DRAFT_0171at 121.022 kb on - strand, within EX28DRAFT_0171at 121.023 kb on + strand, within EX28DRAFT_0171at 121.047 kb on + strand, within EX28DRAFT_0171at 121.125 kb on + strand, within EX28DRAFT_0171at 121.229 kb on - strand, within EX28DRAFT_0171at 121.229 kb on - strand, within EX28DRAFT_0171at 121.257 kb on + strand, within EX28DRAFT_0171at 121.268 kb on - strand, within EX28DRAFT_0171at 121.272 kb on + strand, within EX28DRAFT_0171at 121.273 kb on - strand, within EX28DRAFT_0171at 121.391 kb on - strand, within EX28DRAFT_0171at 121.445 kb on - strand, within EX28DRAFT_0171at 121.730 kb on + strandat 122.452 kb on + strandat 122.453 kb on - strandat 122.453 kb on - strandat 122.497 kb on + strandat 122.556 kb on - strandat 122.588 kb on + strandat 122.877 kb on - strand, within EX28DRAFT_0173at 122.877 kb on - strand, within EX28DRAFT_0173at 122.879 kb on + strand, within EX28DRAFT_0173at 122.882 kb on - strand, within EX28DRAFT_0173at 123.130 kb on + strand, within EX28DRAFT_0173at 123.131 kb on - strand, within EX28DRAFT_0173at 123.142 kb on + strand, within EX28DRAFT_0173at 123.142 kb on + strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.143 kb on - strand, within EX28DRAFT_0173at 123.188 kb on + strand, within EX28DRAFT_0173at 123.188 kb on + strand, within EX28DRAFT_0173at 123.205 kb on + strand, within EX28DRAFT_0173at 123.205 kb on + strand, within EX28DRAFT_0173at 123.206 kb on - strand, within EX28DRAFT_0173at 123.206 kb on - strand, within EX28DRAFT_0173

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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120,792 + EX28DRAFT_0171 0.33 -0.5
120,803 + EX28DRAFT_0171 0.34 +0.1
120,804 - EX28DRAFT_0171 0.34 -0.0
120,844 - EX28DRAFT_0171 0.37 -0.5
121,021 + EX28DRAFT_0171 0.51 -0.2
121,022 - EX28DRAFT_0171 0.51 +0.3
121,023 + EX28DRAFT_0171 0.51 +0.6
121,047 + EX28DRAFT_0171 0.53 +0.1
121,125 + EX28DRAFT_0171 0.59 +0.4
121,229 - EX28DRAFT_0171 0.67 -0.2
121,229 - EX28DRAFT_0171 0.67 -0.5
121,257 + EX28DRAFT_0171 0.69 -0.2
121,268 - EX28DRAFT_0171 0.70 +0.2
121,272 + EX28DRAFT_0171 0.70 +0.6
121,273 - EX28DRAFT_0171 0.70 +0.0
121,391 - EX28DRAFT_0171 0.79 -0.7
121,445 - EX28DRAFT_0171 0.84 +0.0
121,730 + -0.8
122,452 + +0.9
122,453 - -0.6
122,453 - +0.2
122,497 + +0.8
122,556 - +0.1
122,588 + +0.2
122,877 - EX28DRAFT_0173 0.27 -0.1
122,877 - EX28DRAFT_0173 0.27 +0.5
122,879 + EX28DRAFT_0173 0.27 -1.8
122,882 - EX28DRAFT_0173 0.27 +0.5
123,130 + EX28DRAFT_0173 0.45 +0.1
123,131 - EX28DRAFT_0173 0.45 -1.8
123,142 + EX28DRAFT_0173 0.46 +0.4
123,142 + EX28DRAFT_0173 0.46 -0.6
123,143 - EX28DRAFT_0173 0.46 -1.0
123,143 - EX28DRAFT_0173 0.46 -0.0
123,143 - EX28DRAFT_0173 0.46 -0.1
123,143 - EX28DRAFT_0173 0.46 -0.2
123,143 - EX28DRAFT_0173 0.46 +2.5
123,188 + EX28DRAFT_0173 0.49 -0.4
123,188 + EX28DRAFT_0173 0.49 +0.1
123,205 + EX28DRAFT_0173 0.50 -0.3
123,205 + EX28DRAFT_0173 0.50 -0.1
123,206 - EX28DRAFT_0173 0.50 -0.1
123,206 - EX28DRAFT_0173 0.50 -1.6

Or see this region's nucleotide sequence