Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0102

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0100 and EX28DRAFT_0101 are separated by 149 nucleotidesEX28DRAFT_0101 and EX28DRAFT_0102 are separated by 116 nucleotidesEX28DRAFT_0102 and EX28DRAFT_0103 overlap by 6 nucleotides EX28DRAFT_0100: EX28DRAFT_0100 - Predicted membrane protein, at 41,594 to 42,016 _0100 EX28DRAFT_0101: EX28DRAFT_0101 - Protein of unknown function (DUF2569), at 42,166 to 42,657 _0101 EX28DRAFT_0102: EX28DRAFT_0102 - Nucleoside H+ symporter, at 42,774 to 43,919 _0102 EX28DRAFT_0103: EX28DRAFT_0103 - Transcriptional antiterminator, at 43,914 to 45,191 _0103 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 41.839 kb on + strand, within EX28DRAFT_0100at 41.881 kb on + strand, within EX28DRAFT_0100at 41.882 kb on - strand, within EX28DRAFT_0100at 41.882 kb on - strand, within EX28DRAFT_0100at 41.882 kb on - strand, within EX28DRAFT_0100at 41.883 kb on + strand, within EX28DRAFT_0100at 41.883 kb on + strand, within EX28DRAFT_0100at 41.883 kb on + strand, within EX28DRAFT_0100at 41.883 kb on + strand, within EX28DRAFT_0100at 41.883 kb on + strand, within EX28DRAFT_0100at 41.884 kb on - strand, within EX28DRAFT_0100at 41.884 kb on - strand, within EX28DRAFT_0100at 41.884 kb on - strand, within EX28DRAFT_0100at 41.889 kb on - strand, within EX28DRAFT_0100at 42.005 kb on + strandat 42.005 kb on + strandat 42.006 kb on - strandat 42.016 kb on + strandat 42.016 kb on + strandat 42.046 kb on + strandat 42.053 kb on - strandat 42.116 kb on - strandat 42.166 kb on - strandat 42.201 kb on + strandat 42.201 kb on + strandat 42.201 kb on + strandat 42.201 kb on + strandat 42.265 kb on + strand, within EX28DRAFT_0101at 42.325 kb on + strand, within EX28DRAFT_0101at 42.326 kb on - strand, within EX28DRAFT_0101at 42.366 kb on + strand, within EX28DRAFT_0101at 42.444 kb on + strand, within EX28DRAFT_0101at 42.485 kb on - strand, within EX28DRAFT_0101at 42.488 kb on + strand, within EX28DRAFT_0101at 42.489 kb on - strand, within EX28DRAFT_0101at 42.504 kb on + strand, within EX28DRAFT_0101at 42.650 kb on + strandat 42.651 kb on - strandat 42.685 kb on + strandat 42.713 kb on + strandat 42.714 kb on - strandat 42.714 kb on - strandat 42.748 kb on + strandat 42.749 kb on - strandat 42.827 kb on + strandat 42.828 kb on - strandat 43.015 kb on + strand, within EX28DRAFT_0102at 43.016 kb on - strand, within EX28DRAFT_0102at 43.185 kb on - strand, within EX28DRAFT_0102at 43.233 kb on + strand, within EX28DRAFT_0102at 43.261 kb on + strand, within EX28DRAFT_0102at 43.262 kb on - strand, within EX28DRAFT_0102at 43.262 kb on - strand, within EX28DRAFT_0102at 43.435 kb on - strand, within EX28DRAFT_0102at 43.530 kb on - strand, within EX28DRAFT_0102at 43.655 kb on - strand, within EX28DRAFT_0102at 43.685 kb on + strand, within EX28DRAFT_0102at 43.714 kb on - strand, within EX28DRAFT_0102at 43.714 kb on - strand, within EX28DRAFT_0102at 43.743 kb on - strand, within EX28DRAFT_0102at 43.787 kb on + strand, within EX28DRAFT_0102at 43.871 kb on - strandat 44.400 kb on - strand, within EX28DRAFT_0103at 44.400 kb on - strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.401 kb on + strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.402 kb on - strand, within EX28DRAFT_0103at 44.546 kb on + strand, within EX28DRAFT_0103at 44.634 kb on - strand, within EX28DRAFT_0103at 44.638 kb on + strand, within EX28DRAFT_0103at 44.719 kb on + strand, within EX28DRAFT_0103at 44.719 kb on + strand, within EX28DRAFT_0103at 44.728 kb on + strand, within EX28DRAFT_0103at 44.737 kb on - strand, within EX28DRAFT_0103at 44.821 kb on + strand, within EX28DRAFT_0103at 44.874 kb on - strand, within EX28DRAFT_0103

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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41,839 + EX28DRAFT_0100 0.58 +0.9
41,881 + EX28DRAFT_0100 0.68 -0.2
41,882 - EX28DRAFT_0100 0.68 -0.2
41,882 - EX28DRAFT_0100 0.68 +0.1
41,882 - EX28DRAFT_0100 0.68 -0.0
41,883 + EX28DRAFT_0100 0.68 -0.6
41,883 + EX28DRAFT_0100 0.68 -0.6
41,883 + EX28DRAFT_0100 0.68 +0.4
41,883 + EX28DRAFT_0100 0.68 -0.4
41,883 + EX28DRAFT_0100 0.68 +1.5
41,884 - EX28DRAFT_0100 0.69 -0.6
41,884 - EX28DRAFT_0100 0.69 -0.3
41,884 - EX28DRAFT_0100 0.69 +1.2
41,889 - EX28DRAFT_0100 0.70 -0.6
42,005 + -0.8
42,005 + +1.3
42,006 - +0.8
42,016 + -0.1
42,016 + +0.7
42,046 + -0.3
42,053 - +0.5
42,116 - -0.4
42,166 - +0.1
42,201 + +0.2
42,201 + -0.1
42,201 + +0.2
42,201 + -0.2
42,265 + EX28DRAFT_0101 0.20 -0.0
42,325 + EX28DRAFT_0101 0.32 +0.0
42,326 - EX28DRAFT_0101 0.33 -0.1
42,366 + EX28DRAFT_0101 0.41 -0.9
42,444 + EX28DRAFT_0101 0.57 -0.3
42,485 - EX28DRAFT_0101 0.65 +0.1
42,488 + EX28DRAFT_0101 0.65 -0.4
42,489 - EX28DRAFT_0101 0.66 +0.1
42,504 + EX28DRAFT_0101 0.69 +0.3
42,650 + +1.0
42,651 - +0.2
42,685 + +0.4
42,713 + +0.4
42,714 - -0.4
42,714 - -1.5
42,748 + +0.5
42,749 - -0.2
42,827 + -0.2
42,828 - +0.7
43,015 + EX28DRAFT_0102 0.21 +0.1
43,016 - EX28DRAFT_0102 0.21 +0.3
43,185 - EX28DRAFT_0102 0.36 -0.2
43,233 + EX28DRAFT_0102 0.40 +0.4
43,261 + EX28DRAFT_0102 0.42 +1.2
43,262 - EX28DRAFT_0102 0.43 -0.0
43,262 - EX28DRAFT_0102 0.43 -0.5
43,435 - EX28DRAFT_0102 0.58 +0.9
43,530 - EX28DRAFT_0102 0.66 -0.1
43,655 - EX28DRAFT_0102 0.77 -0.6
43,685 + EX28DRAFT_0102 0.79 +0.7
43,714 - EX28DRAFT_0102 0.82 +0.3
43,714 - EX28DRAFT_0102 0.82 +0.2
43,743 - EX28DRAFT_0102 0.85 -2.8
43,787 + EX28DRAFT_0102 0.88 +0.4
43,871 - +0.2
44,400 - EX28DRAFT_0103 0.38 +0.7
44,400 - EX28DRAFT_0103 0.38 -2.2
44,401 + EX28DRAFT_0103 0.38 +2.0
44,401 + EX28DRAFT_0103 0.38 -0.5
44,401 + EX28DRAFT_0103 0.38 -1.9
44,401 + EX28DRAFT_0103 0.38 +0.1
44,401 + EX28DRAFT_0103 0.38 -0.4
44,402 - EX28DRAFT_0103 0.38 -0.1
44,402 - EX28DRAFT_0103 0.38 +0.3
44,402 - EX28DRAFT_0103 0.38 -0.8
44,402 - EX28DRAFT_0103 0.38 -0.5
44,402 - EX28DRAFT_0103 0.38 -0.1
44,402 - EX28DRAFT_0103 0.38 -0.2
44,546 + EX28DRAFT_0103 0.49 +0.7
44,634 - EX28DRAFT_0103 0.56 +0.3
44,638 + EX28DRAFT_0103 0.57 +0.4
44,719 + EX28DRAFT_0103 0.63 -0.7
44,719 + EX28DRAFT_0103 0.63 -1.3
44,728 + EX28DRAFT_0103 0.64 -0.2
44,737 - EX28DRAFT_0103 0.64 +1.4
44,821 + EX28DRAFT_0103 0.71 -0.1
44,874 - EX28DRAFT_0103 0.75 -0.0

Or see this region's nucleotide sequence