Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0096

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0094 and EX28DRAFT_0095 are separated by 1 nucleotidesEX28DRAFT_0095 and EX28DRAFT_0096 overlap by 14 nucleotidesEX28DRAFT_0096 and EX28DRAFT_0097 are separated by 65 nucleotidesEX28DRAFT_0097 and EX28DRAFT_0098 are separated by 82 nucleotides EX28DRAFT_0094: EX28DRAFT_0094 - Signal transduction histidine kinase, at 34,814 to 36,241 _0094 EX28DRAFT_0095: EX28DRAFT_0095 - YfhG lipoprotein, at 36,243 to 36,980 _0095 EX28DRAFT_0096: EX28DRAFT_0096 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 36,967 to 38,304 _0096 EX28DRAFT_0097: EX28DRAFT_0097 - nitrogen regulatory protein P-II family, at 38,370 to 38,708 _0097 EX28DRAFT_0098: EX28DRAFT_0098 - Hemoglobin-like flavoprotein/Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 38,791 to 39,981 _0098 Position (kb) 36 37 38 39Strain fitness (log2 ratio) -1 0 1 2at 35.972 kb on + strand, within EX28DRAFT_0094at 35.972 kb on + strand, within EX28DRAFT_0094at 35.973 kb on - strand, within EX28DRAFT_0094at 35.986 kb on + strand, within EX28DRAFT_0094at 35.986 kb on + strand, within EX28DRAFT_0094at 36.007 kb on + strand, within EX28DRAFT_0094at 36.008 kb on - strand, within EX28DRAFT_0094at 36.168 kb on + strandat 36.168 kb on + strandat 36.250 kb on + strandat 36.251 kb on - strandat 36.263 kb on + strandat 36.264 kb on - strandat 36.398 kb on + strand, within EX28DRAFT_0095at 36.398 kb on + strand, within EX28DRAFT_0095at 36.399 kb on - strand, within EX28DRAFT_0095at 36.399 kb on - strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.801 kb on - strand, within EX28DRAFT_0095at 36.801 kb on - strand, within EX28DRAFT_0095at 36.826 kb on + strand, within EX28DRAFT_0095at 36.826 kb on + strand, within EX28DRAFT_0095at 36.831 kb on - strand, within EX28DRAFT_0095at 36.831 kb on - strand, within EX28DRAFT_0095at 37.023 kb on - strandat 37.309 kb on + strand, within EX28DRAFT_0096at 37.309 kb on + strand, within EX28DRAFT_0096at 37.310 kb on - strand, within EX28DRAFT_0096at 37.312 kb on - strand, within EX28DRAFT_0096at 37.312 kb on - strand, within EX28DRAFT_0096at 37.849 kb on + strand, within EX28DRAFT_0096at 38.186 kb on + strandat 38.187 kb on - strandat 38.187 kb on - strandat 38.196 kb on + strandat 38.255 kb on - strandat 38.295 kb on + strandat 38.303 kb on - strandat 38.303 kb on - strandat 38.344 kb on + strandat 38.344 kb on + strandat 38.520 kb on + strand, within EX28DRAFT_0097at 38.521 kb on - strand, within EX28DRAFT_0097at 38.521 kb on - strand, within EX28DRAFT_0097at 38.521 kb on - strand, within EX28DRAFT_0097at 38.521 kb on - strand, within EX28DRAFT_0097at 38.521 kb on - strand, within EX28DRAFT_0097at 38.573 kb on + strand, within EX28DRAFT_0097at 38.595 kb on - strand, within EX28DRAFT_0097at 38.706 kb on + strandat 38.706 kb on + strandat 38.727 kb on - strandat 38.874 kb on - strandat 38.904 kb on - strandat 38.904 kb on - strandat 39.113 kb on - strand, within EX28DRAFT_0098at 39.271 kb on - strand, within EX28DRAFT_0098

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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35,972 + EX28DRAFT_0094 0.81 +0.1
35,972 + EX28DRAFT_0094 0.81 +1.3
35,973 - EX28DRAFT_0094 0.81 +0.3
35,986 + EX28DRAFT_0094 0.82 +0.0
35,986 + EX28DRAFT_0094 0.82 -0.1
36,007 + EX28DRAFT_0094 0.84 +0.1
36,008 - EX28DRAFT_0094 0.84 -0.6
36,168 + +0.4
36,168 + -0.4
36,250 + -0.8
36,251 - +0.6
36,263 + -1.6
36,264 - -0.3
36,398 + EX28DRAFT_0095 0.21 +0.3
36,398 + EX28DRAFT_0095 0.21 -0.4
36,399 - EX28DRAFT_0095 0.21 -0.1
36,399 - EX28DRAFT_0095 0.21 -0.1
36,666 + EX28DRAFT_0095 0.57 -0.4
36,666 + EX28DRAFT_0095 0.57 -0.1
36,666 + EX28DRAFT_0095 0.57 +0.1
36,666 + EX28DRAFT_0095 0.57 -0.7
36,666 + EX28DRAFT_0095 0.57 -0.3
36,801 - EX28DRAFT_0095 0.76 -0.0
36,801 - EX28DRAFT_0095 0.76 -0.7
36,826 + EX28DRAFT_0095 0.79 -0.6
36,826 + EX28DRAFT_0095 0.79 -0.6
36,831 - EX28DRAFT_0095 0.80 +1.8
36,831 - EX28DRAFT_0095 0.80 -0.5
37,023 - -0.5
37,309 + EX28DRAFT_0096 0.26 -0.3
37,309 + EX28DRAFT_0096 0.26 -1.1
37,310 - EX28DRAFT_0096 0.26 -0.9
37,312 - EX28DRAFT_0096 0.26 -0.2
37,312 - EX28DRAFT_0096 0.26 -0.3
37,849 + EX28DRAFT_0096 0.66 +0.4
38,186 + -0.7
38,187 - -0.3
38,187 - +1.2
38,196 + -0.6
38,255 - +0.3
38,295 + +0.2
38,303 - -0.7
38,303 - -0.1
38,344 + -0.4
38,344 + -0.2
38,520 + EX28DRAFT_0097 0.44 +0.7
38,521 - EX28DRAFT_0097 0.45 -0.8
38,521 - EX28DRAFT_0097 0.45 -0.3
38,521 - EX28DRAFT_0097 0.45 -0.7
38,521 - EX28DRAFT_0097 0.45 -0.4
38,521 - EX28DRAFT_0097 0.45 -1.5
38,573 + EX28DRAFT_0097 0.60 -0.7
38,595 - EX28DRAFT_0097 0.66 +0.1
38,706 + +0.1
38,706 + +0.8
38,727 - +1.4
38,874 - +0.3
38,904 - +0.8
38,904 - +0.0
39,113 - EX28DRAFT_0098 0.27 +0.5
39,271 - EX28DRAFT_0098 0.40 -0.4

Or see this region's nucleotide sequence