Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0090 and EX28DRAFT_0091 are separated by 135 nucleotides EX28DRAFT_0091 and EX28DRAFT_0092 are separated by 30 nucleotides
EX28DRAFT_0090: EX28DRAFT_0090 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 28,574 to 30,124
_0090
EX28DRAFT_0091: EX28DRAFT_0091 - hypothetical protein, at 30,260 to 30,361
_0091
EX28DRAFT_0092: EX28DRAFT_0092 - phosphoribosylformylglycinamidine synthase, single chain form, at 30,392 to 34,279
_0092
Position (kb) 30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 29.331 kb on + strand, within EX28DRAFT_0090 at 29.356 kb on + strand, within EX28DRAFT_0090 at 29.529 kb on + strand, within EX28DRAFT_0090 at 29.530 kb on - strand, within EX28DRAFT_0090 at 29.683 kb on + strand, within EX28DRAFT_0090 at 29.749 kb on - strand, within EX28DRAFT_0090 at 29.751 kb on + strand, within EX28DRAFT_0090 at 29.752 kb on - strand, within EX28DRAFT_0090 at 29.769 kb on + strand, within EX28DRAFT_0090 at 29.791 kb on + strand, within EX28DRAFT_0090 at 29.793 kb on + strand, within EX28DRAFT_0090 at 29.793 kb on + strand, within EX28DRAFT_0090 at 29.794 kb on - strand, within EX28DRAFT_0090 at 29.794 kb on - strand, within EX28DRAFT_0090 at 29.858 kb on - strand, within EX28DRAFT_0090 at 30.084 kb on - strand at 30.174 kb on + strand at 30.239 kb on + strand at 30.258 kb on + strand at 30.259 kb on - strand at 30.325 kb on + strand, within EX28DRAFT_0091 at 30.500 kb on + strand at 31.011 kb on - strand, within EX28DRAFT_0092 at 31.157 kb on + strand, within EX28DRAFT_0092
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 29,331 + EX28DRAFT_0090 0.49 +0.5 29,356 + EX28DRAFT_0090 0.50 +0.9 29,529 + EX28DRAFT_0090 0.62 +0.3 29,530 - EX28DRAFT_0090 0.62 -0.1 29,683 + EX28DRAFT_0090 0.72 -0.9 29,749 - EX28DRAFT_0090 0.76 +0.1 29,751 + EX28DRAFT_0090 0.76 -0.4 29,752 - EX28DRAFT_0090 0.76 -0.6 29,769 + EX28DRAFT_0090 0.77 -0.1 29,791 + EX28DRAFT_0090 0.78 -0.6 29,793 + EX28DRAFT_0090 0.79 -0.5 29,793 + EX28DRAFT_0090 0.79 -0.4 29,794 - EX28DRAFT_0090 0.79 -1.4 29,794 - EX28DRAFT_0090 0.79 -0.1 29,858 - EX28DRAFT_0090 0.83 +0.3 30,084 - +0.3 30,174 + +0.3 30,239 + -0.1 30,258 + -1.2 30,259 - -3.4 30,325 + EX28DRAFT_0091 0.64 -3.5 30,500 + -0.3 31,011 - EX28DRAFT_0092 0.16 +1.0 31,157 + EX28DRAFT_0092 0.20 +3.6
Or see this region's nucleotide sequence