Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0067 and EX28DRAFT_0068 are separated by 313 nucleotides EX28DRAFT_0068 and EX28DRAFT_0069 are separated by 50 nucleotides EX28DRAFT_0069 and EX28DRAFT_0070 are separated by 11 nucleotides EX28DRAFT_0070 and EX28DRAFT_0071 overlap by 16 nucleotides
EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599
_0067
EX28DRAFT_0068: EX28DRAFT_0068 - autonomous glycyl radical cofactor GrcA, at 9,913 to 10,296
_0068
EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675
_0069
EX28DRAFT_0070: EX28DRAFT_0070 - Predicted O-methyltransferase, at 11,687 to 12,545
_0070
EX28DRAFT_0071: EX28DRAFT_0071 - L-aspartate oxidase (EC 1.4.3.16), at 12,530 to 14,149
_0071
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 9.539 kb on + strand at 9.540 kb on - strand at 9.544 kb on + strand at 9.545 kb on - strand at 9.631 kb on - strand at 9.635 kb on + strand at 9.830 kb on + strand at 9.830 kb on + strand at 9.831 kb on - strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.832 kb on + strand at 9.833 kb on - strand at 9.833 kb on - strand at 9.833 kb on - strand at 9.834 kb on + strand at 9.834 kb on + strand at 9.834 kb on + strand at 9.835 kb on - strand at 9.836 kb on + strand at 9.889 kb on + strand at 9.889 kb on + strand at 9.890 kb on - strand at 9.890 kb on - strand at 9.895 kb on - strand at 9.918 kb on + strand at 9.919 kb on - strand at 10.072 kb on + strand, within EX28DRAFT_0068 at 10.137 kb on - strand, within EX28DRAFT_0068 at 10.275 kb on + strand at 10.403 kb on + strand at 10.682 kb on - strand, within EX28DRAFT_0069 at 11.370 kb on - strand, within EX28DRAFT_0069 at 11.681 kb on - strand at 11.681 kb on - strand at 11.702 kb on + strand at 11.703 kb on - strand at 11.704 kb on + strand at 11.704 kb on + strand at 11.704 kb on + strand at 11.705 kb on - strand at 11.720 kb on - strand at 11.736 kb on + strand at 11.737 kb on - strand at 11.737 kb on - strand at 11.771 kb on + strand at 11.771 kb on + strand at 11.792 kb on - strand, within EX28DRAFT_0070 at 11.792 kb on - strand, within EX28DRAFT_0070 at 11.948 kb on + strand, within EX28DRAFT_0070 at 11.948 kb on + strand, within EX28DRAFT_0070 at 11.949 kb on - strand, within EX28DRAFT_0070 at 12.072 kb on - strand, within EX28DRAFT_0070 at 12.231 kb on + strand, within EX28DRAFT_0070 at 12.231 kb on + strand, within EX28DRAFT_0070 at 12.232 kb on - strand, within EX28DRAFT_0070 at 12.233 kb on + strand, within EX28DRAFT_0070 at 12.252 kb on - strand, within EX28DRAFT_0070 at 12.386 kb on + strand, within EX28DRAFT_0070 at 12.386 kb on + strand, within EX28DRAFT_0070 at 12.507 kb on + strand at 12.539 kb on + strand at 12.539 kb on + strand at 12.543 kb on + strand at 12.543 kb on + strand at 12.544 kb on - strand at 12.604 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.606 kb on + strand at 12.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 9,539 + -0.1 9,540 - -3.5 9,544 + -0.9 9,545 - +0.4 9,631 - +0.5 9,635 + -0.8 9,830 + +0.3 9,830 + -0.1 9,831 - +0.5 9,832 + +0.4 9,832 + +0.2 9,832 + -0.5 9,832 + +0.2 9,832 + -0.6 9,832 + -0.6 9,832 + -0.8 9,832 + +0.3 9,833 - +0.8 9,833 - +0.1 9,833 - -1.2 9,834 + -0.1 9,834 + -0.2 9,834 + +0.2 9,835 - +1.2 9,836 + +2.0 9,889 + -0.6 9,889 + +1.4 9,890 - -2.6 9,890 - -0.0 9,895 - +0.6 9,918 + +0.6 9,919 - +0.3 10,072 + EX28DRAFT_0068 0.41 -0.5 10,137 - EX28DRAFT_0068 0.58 -1.1 10,275 + -2.2 10,403 + +0.1 10,682 - EX28DRAFT_0069 0.25 -0.4 11,370 - EX28DRAFT_0069 0.77 -2.5 11,681 - +0.3 11,681 - +0.0 11,702 + -0.5 11,703 - -0.4 11,704 + +0.4 11,704 + +0.5 11,704 + +0.7 11,705 - -0.4 11,720 - -0.6 11,736 + +0.3 11,737 - -0.2 11,737 - +0.4 11,771 + -0.0 11,771 + +0.4 11,792 - EX28DRAFT_0070 0.12 -0.5 11,792 - EX28DRAFT_0070 0.12 -0.6 11,948 + EX28DRAFT_0070 0.30 -0.4 11,948 + EX28DRAFT_0070 0.30 +0.2 11,949 - EX28DRAFT_0070 0.31 +0.1 12,072 - EX28DRAFT_0070 0.45 +0.1 12,231 + EX28DRAFT_0070 0.63 -0.2 12,231 + EX28DRAFT_0070 0.63 +0.4 12,232 - EX28DRAFT_0070 0.63 +0.0 12,233 + EX28DRAFT_0070 0.64 +0.4 12,252 - EX28DRAFT_0070 0.66 -0.3 12,386 + EX28DRAFT_0070 0.81 +0.1 12,386 + EX28DRAFT_0070 0.81 -0.8 12,507 + +0.1 12,539 + -1.3 12,539 + +0.2 12,543 + -0.2 12,543 + -0.2 12,544 - -0.1 12,604 + -0.3 12,606 + +0.1 12,606 + +0.2 12,606 + -0.0 12,606 + +0.2 12,628 + -0.2
Or see this region's nucleotide sequence