Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03753 and CCNA_03754 overlap by 20 nucleotides CCNA_03754 and CCNA_03755 are separated by 119 nucleotides
CCNA_03753: CCNA_03753 - iron-sulfur cluster-binding protein, at 3,922,579 to 3,923,709
_03753
CCNA_03754: CCNA_03754 - FtsZ-binding protein FzlA, at 3,923,690 to 3,924,376
_03754
CCNA_03755: CCNA_03755 - bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase, at 3,924,496 to 3,925,947
_03755
Position (kb)
3923
3924
3925 Strain fitness (log2 ratio)
-2
-1
0
1 at 3922.723 kb on + strand, within CCNA_03753 at 3922.723 kb on + strand, within CCNA_03753 at 3922.837 kb on + strand, within CCNA_03753 at 3922.845 kb on - strand, within CCNA_03753 at 3922.845 kb on - strand, within CCNA_03753 at 3922.878 kb on - strand, within CCNA_03753 at 3922.938 kb on + strand, within CCNA_03753 at 3922.958 kb on + strand, within CCNA_03753 at 3922.999 kb on + strand, within CCNA_03753 at 3923.126 kb on - strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.145 kb on + strand, within CCNA_03753 at 3923.146 kb on + strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.153 kb on - strand, within CCNA_03753 at 3923.155 kb on + strand, within CCNA_03753 at 3923.155 kb on + strand, within CCNA_03753 at 3923.163 kb on - strand, within CCNA_03753 at 3923.183 kb on + strand, within CCNA_03753 at 3923.186 kb on - strand, within CCNA_03753 at 3923.192 kb on - strand, within CCNA_03753 at 3923.227 kb on + strand, within CCNA_03753 at 3923.235 kb on - strand, within CCNA_03753 at 3923.254 kb on - strand, within CCNA_03753 at 3923.286 kb on + strand, within CCNA_03753 at 3923.313 kb on + strand, within CCNA_03753 at 3923.314 kb on + strand, within CCNA_03753 at 3923.318 kb on - strand, within CCNA_03753 at 3923.331 kb on + strand, within CCNA_03753 at 3923.371 kb on - strand, within CCNA_03753 at 3923.374 kb on + strand, within CCNA_03753 at 3923.413 kb on - strand, within CCNA_03753 at 3923.468 kb on - strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.517 kb on + strand, within CCNA_03753 at 3923.522 kb on + strand, within CCNA_03753 at 3923.525 kb on - strand, within CCNA_03753 at 3923.530 kb on - strand, within CCNA_03753 at 3923.558 kb on + strand, within CCNA_03753 at 3923.576 kb on + strand, within CCNA_03753 at 3923.597 kb on - strand at 3923.608 kb on + strand at 3924.492 kb on + strand at 3924.537 kb on - strand at 3924.582 kb on - strand at 3924.582 kb on - strand at 3924.585 kb on + strand at 3924.590 kb on + strand at 3924.592 kb on - strand at 3924.631 kb on - strand at 3924.650 kb on + strand, within CCNA_03755 at 3924.650 kb on + strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.658 kb on - strand, within CCNA_03755 at 3924.715 kb on + strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.741 kb on - strand, within CCNA_03755 at 3924.824 kb on + strand, within CCNA_03755 at 3924.830 kb on + strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.832 kb on - strand, within CCNA_03755 at 3924.838 kb on - strand, within CCNA_03755 at 3924.838 kb on - strand, within CCNA_03755 at 3924.867 kb on + strand, within CCNA_03755 at 3924.867 kb on + strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.875 kb on - strand, within CCNA_03755 at 3924.896 kb on + strand, within CCNA_03755 at 3924.916 kb on + strand, within CCNA_03755 at 3924.916 kb on + strand, within CCNA_03755 at 3924.936 kb on - strand, within CCNA_03755 at 3924.981 kb on - strand, within CCNA_03755 at 3925.041 kb on + strand, within CCNA_03755 at 3925.084 kb on - strand, within CCNA_03755 at 3925.110 kb on + strand, within CCNA_03755 at 3925.111 kb on + strand, within CCNA_03755 at 3925.210 kb on + strand, within CCNA_03755 at 3925.218 kb on - strand, within CCNA_03755 at 3925.218 kb on - strand, within CCNA_03755 at 3925.234 kb on + strand, within CCNA_03755 at 3925.242 kb on - strand, within CCNA_03755 at 3925.319 kb on + strand, within CCNA_03755 at 3925.354 kb on + strand, within CCNA_03755 at 3925.367 kb on - strand, within CCNA_03755
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 3,922,723 + CCNA_03753 0.13 -0.9 3,922,723 + CCNA_03753 0.13 -0.0 3,922,837 + CCNA_03753 0.23 +0.4 3,922,845 - CCNA_03753 0.24 -0.5 3,922,845 - CCNA_03753 0.24 -0.3 3,922,878 - CCNA_03753 0.26 -1.0 3,922,938 + CCNA_03753 0.32 -0.2 3,922,958 + CCNA_03753 0.34 +0.5 3,922,999 + CCNA_03753 0.37 -0.5 3,923,126 - CCNA_03753 0.48 -0.0 3,923,145 + CCNA_03753 0.50 -0.9 3,923,145 + CCNA_03753 0.50 -0.3 3,923,145 + CCNA_03753 0.50 -1.0 3,923,145 + CCNA_03753 0.50 -0.5 3,923,145 + CCNA_03753 0.50 -0.4 3,923,145 + CCNA_03753 0.50 +0.5 3,923,146 + CCNA_03753 0.50 -1.0 3,923,153 - CCNA_03753 0.51 +0.2 3,923,153 - CCNA_03753 0.51 -0.7 3,923,153 - CCNA_03753 0.51 -0.5 3,923,153 - CCNA_03753 0.51 +0.3 3,923,153 - CCNA_03753 0.51 -1.0 3,923,153 - CCNA_03753 0.51 +0.1 3,923,155 + CCNA_03753 0.51 -0.8 3,923,155 + CCNA_03753 0.51 -2.2 3,923,163 - CCNA_03753 0.52 -1.1 3,923,183 + CCNA_03753 0.53 -0.2 3,923,186 - CCNA_03753 0.54 -1.6 3,923,192 - CCNA_03753 0.54 -0.0 3,923,227 + CCNA_03753 0.57 -0.5 3,923,235 - CCNA_03753 0.58 -0.4 3,923,254 - CCNA_03753 0.60 -0.2 3,923,286 + CCNA_03753 0.63 -0.6 3,923,313 + CCNA_03753 0.65 -0.8 3,923,314 + CCNA_03753 0.65 +0.4 3,923,318 - CCNA_03753 0.65 +0.0 3,923,331 + CCNA_03753 0.66 -1.0 3,923,371 - CCNA_03753 0.70 -0.6 3,923,374 + CCNA_03753 0.70 -0.3 3,923,413 - CCNA_03753 0.74 +0.1 3,923,468 - CCNA_03753 0.79 +1.2 3,923,517 + CCNA_03753 0.83 -1.3 3,923,517 + CCNA_03753 0.83 -0.8 3,923,522 + CCNA_03753 0.83 -0.3 3,923,525 - CCNA_03753 0.84 -0.6 3,923,530 - CCNA_03753 0.84 +0.3 3,923,558 + CCNA_03753 0.87 -0.6 3,923,576 + CCNA_03753 0.88 -1.6 3,923,597 - -0.9 3,923,608 + -0.7 3,924,492 + -2.4 3,924,537 - +0.2 3,924,582 - -0.5 3,924,582 - -1.0 3,924,585 + -0.0 3,924,590 + +0.5 3,924,592 - +0.2 3,924,631 - -0.4 3,924,650 + CCNA_03755 0.11 -1.9 3,924,650 + CCNA_03755 0.11 -1.4 3,924,658 - CCNA_03755 0.11 -2.2 3,924,658 - CCNA_03755 0.11 -1.7 3,924,715 + CCNA_03755 0.15 +0.7 3,924,741 - CCNA_03755 0.17 +0.5 3,924,741 - CCNA_03755 0.17 -1.1 3,924,741 - CCNA_03755 0.17 -0.6 3,924,824 + CCNA_03755 0.23 -0.3 3,924,830 + CCNA_03755 0.23 -0.8 3,924,832 - CCNA_03755 0.23 -1.9 3,924,832 - CCNA_03755 0.23 -2.0 3,924,832 - CCNA_03755 0.23 -0.6 3,924,838 - CCNA_03755 0.24 -0.8 3,924,838 - CCNA_03755 0.24 -0.0 3,924,867 + CCNA_03755 0.26 -0.6 3,924,867 + CCNA_03755 0.26 -0.6 3,924,875 - CCNA_03755 0.26 -1.4 3,924,875 - CCNA_03755 0.26 -0.9 3,924,896 + CCNA_03755 0.28 -1.4 3,924,916 + CCNA_03755 0.29 -0.8 3,924,916 + CCNA_03755 0.29 +0.5 3,924,936 - CCNA_03755 0.30 -0.0 3,924,981 - CCNA_03755 0.33 +0.2 3,925,041 + CCNA_03755 0.38 -0.3 3,925,084 - CCNA_03755 0.40 +0.2 3,925,110 + CCNA_03755 0.42 -2.2 3,925,111 + CCNA_03755 0.42 +0.5 3,925,210 + CCNA_03755 0.49 -2.4 3,925,218 - CCNA_03755 0.50 +0.0 3,925,218 - CCNA_03755 0.50 -0.8 3,925,234 + CCNA_03755 0.51 -1.5 3,925,242 - CCNA_03755 0.51 -0.5 3,925,319 + CCNA_03755 0.57 +0.2 3,925,354 + CCNA_03755 0.59 +0.2 3,925,367 - CCNA_03755 0.60 -1.9
Or see this region's nucleotide sequence