Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03497

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03496 and CCNA_03497 are separated by 135 nucleotidesCCNA_03497 and CCNA_03498 overlap by 4 nucleotidesCCNA_03498 and CCNA_03499 are separated by 43 nucleotidesCCNA_03499 and CCNA_03500 overlap by 4 nucleotides CCNA_03496: CCNA_03496 - hypothetical protein, at 3,655,158 to 3,655,925 _03496 CCNA_03497: CCNA_03497 - hypothetical protein, at 3,656,061 to 3,656,513 _03497 CCNA_03498: CCNA_03498 - MarR-family transcriptional regulator, at 3,656,510 to 3,656,806 _03498 CCNA_03499: CCNA_03499 - hypothetical protein, at 3,656,850 to 3,657,158 _03499 CCNA_03500: CCNA_03500 - FAD/FMN-containing dehydrogenase, at 3,657,155 to 3,658,564 _03500 Position (kb) 3656 3657Strain fitness (log2 ratio) -2 -1 0 1 2at 3655.068 kb on + strandat 3655.068 kb on + strandat 3655.068 kb on + strandat 3655.076 kb on - strandat 3655.076 kb on - strandat 3655.076 kb on - strandat 3655.132 kb on - strandat 3655.449 kb on + strand, within CCNA_03496at 3655.737 kb on - strand, within CCNA_03496at 3655.872 kb on + strandat 3655.881 kb on - strandat 3655.939 kb on - strandat 3655.941 kb on + strandat 3656.118 kb on + strand, within CCNA_03497at 3656.144 kb on + strand, within CCNA_03497at 3656.155 kb on + strand, within CCNA_03497at 3656.163 kb on - strand, within CCNA_03497at 3656.168 kb on - strand, within CCNA_03497at 3656.177 kb on - strand, within CCNA_03497at 3656.208 kb on + strand, within CCNA_03497at 3656.217 kb on - strand, within CCNA_03497at 3656.225 kb on + strand, within CCNA_03497at 3656.256 kb on - strand, within CCNA_03497at 3656.276 kb on + strand, within CCNA_03497at 3656.302 kb on - strand, within CCNA_03497at 3656.338 kb on + strand, within CCNA_03497at 3656.338 kb on + strand, within CCNA_03497at 3656.346 kb on - strand, within CCNA_03497at 3656.412 kb on + strand, within CCNA_03497at 3656.498 kb on + strandat 3656.504 kb on + strandat 3656.512 kb on - strandat 3656.512 kb on - strandat 3656.512 kb on - strandat 3656.519 kb on + strandat 3656.529 kb on - strandat 3656.612 kb on + strand, within CCNA_03498at 3656.612 kb on + strand, within CCNA_03498at 3656.612 kb on + strand, within CCNA_03498at 3656.612 kb on + strand, within CCNA_03498at 3656.647 kb on + strand, within CCNA_03498at 3656.655 kb on + strand, within CCNA_03498at 3656.680 kb on + strand, within CCNA_03498at 3656.728 kb on + strand, within CCNA_03498at 3656.747 kb on + strand, within CCNA_03498at 3656.810 kb on + strandat 3656.817 kb on + strandat 3656.825 kb on - strandat 3656.825 kb on - strandat 3656.849 kb on + strandat 3656.857 kb on + strandat 3656.857 kb on + strandat 3656.857 kb on + strandat 3656.865 kb on - strandat 3656.865 kb on - strandat 3656.865 kb on - strandat 3656.865 kb on - strandat 3656.865 kb on - strandat 3656.865 kb on - strandat 3656.874 kb on + strandat 3656.879 kb on + strandat 3656.882 kb on - strand, within CCNA_03499at 3656.882 kb on - strand, within CCNA_03499at 3656.890 kb on + strand, within CCNA_03499at 3656.904 kb on + strand, within CCNA_03499at 3656.956 kb on - strand, within CCNA_03499at 3656.994 kb on + strand, within CCNA_03499at 3657.002 kb on - strand, within CCNA_03499at 3657.060 kb on + strand, within CCNA_03499at 3657.070 kb on + strand, within CCNA_03499at 3657.078 kb on - strand, within CCNA_03499at 3657.140 kb on + strandat 3657.148 kb on - strandat 3657.148 kb on - strandat 3657.198 kb on - strandat 3657.245 kb on + strandat 3657.245 kb on + strandat 3657.271 kb on + strandat 3657.293 kb on + strandat 3657.296 kb on - strand, within CCNA_03500at 3657.328 kb on - strand, within CCNA_03500at 3657.406 kb on - strand, within CCNA_03500

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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3,655,068 + -0.7
3,655,068 + +0.7
3,655,068 + -2.0
3,655,076 - +0.8
3,655,076 - -0.0
3,655,076 - +0.3
3,655,132 - +1.8
3,655,449 + CCNA_03496 0.38 -1.1
3,655,737 - CCNA_03496 0.75 +0.6
3,655,872 + -0.2
3,655,881 - +1.1
3,655,939 - -0.2
3,655,941 + -0.1
3,656,118 + CCNA_03497 0.13 +0.4
3,656,144 + CCNA_03497 0.18 -0.2
3,656,155 + CCNA_03497 0.21 -0.3
3,656,163 - CCNA_03497 0.23 -0.8
3,656,168 - CCNA_03497 0.24 -0.1
3,656,177 - CCNA_03497 0.26 +0.3
3,656,208 + CCNA_03497 0.32 +0.1
3,656,217 - CCNA_03497 0.34 -1.6
3,656,225 + CCNA_03497 0.36 +1.8
3,656,256 - CCNA_03497 0.43 +0.5
3,656,276 + CCNA_03497 0.47 -1.9
3,656,302 - CCNA_03497 0.53 -0.8
3,656,338 + CCNA_03497 0.61 +0.3
3,656,338 + CCNA_03497 0.61 +0.4
3,656,346 - CCNA_03497 0.63 -1.7
3,656,412 + CCNA_03497 0.77 +1.7
3,656,498 + +0.3
3,656,504 + -0.4
3,656,512 - -1.2
3,656,512 - -1.6
3,656,512 - -0.5
3,656,519 + -0.2
3,656,529 - +0.0
3,656,612 + CCNA_03498 0.34 -0.4
3,656,612 + CCNA_03498 0.34 -0.0
3,656,612 + CCNA_03498 0.34 -0.2
3,656,612 + CCNA_03498 0.34 +0.3
3,656,647 + CCNA_03498 0.46 -0.3
3,656,655 + CCNA_03498 0.49 +0.3
3,656,680 + CCNA_03498 0.57 -0.3
3,656,728 + CCNA_03498 0.73 -0.9
3,656,747 + CCNA_03498 0.80 -1.2
3,656,810 + +0.4
3,656,817 + -0.3
3,656,825 - -0.4
3,656,825 - +0.7
3,656,849 + -1.7
3,656,857 + -0.2
3,656,857 + +0.4
3,656,857 + +0.7
3,656,865 - -0.5
3,656,865 - +0.1
3,656,865 - -0.5
3,656,865 - +0.5
3,656,865 - +0.0
3,656,865 - -0.4
3,656,874 + +0.4
3,656,879 + +0.5
3,656,882 - CCNA_03499 0.10 -0.6
3,656,882 - CCNA_03499 0.10 +0.2
3,656,890 + CCNA_03499 0.13 +0.6
3,656,904 + CCNA_03499 0.17 +1.0
3,656,956 - CCNA_03499 0.34 +0.1
3,656,994 + CCNA_03499 0.47 +0.0
3,657,002 - CCNA_03499 0.49 +0.4
3,657,060 + CCNA_03499 0.68 -0.9
3,657,070 + CCNA_03499 0.71 -0.5
3,657,078 - CCNA_03499 0.74 +0.2
3,657,140 + -1.0
3,657,148 - +1.3
3,657,148 - +0.4
3,657,198 - +0.3
3,657,245 + +0.1
3,657,245 + -0.0
3,657,271 + -0.2
3,657,293 + +0.6
3,657,296 - CCNA_03500 0.10 +0.4
3,657,328 - CCNA_03500 0.12 +0.3
3,657,406 - CCNA_03500 0.18 +0.6

Or see this region's nucleotide sequence