Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03496 and CCNA_03497 are separated by 135 nucleotides CCNA_03497 and CCNA_03498 overlap by 4 nucleotides CCNA_03498 and CCNA_03499 are separated by 43 nucleotides CCNA_03499 and CCNA_03500 overlap by 4 nucleotides
CCNA_03496: CCNA_03496 - hypothetical protein, at 3,655,158 to 3,655,925
_03496
CCNA_03497: CCNA_03497 - hypothetical protein, at 3,656,061 to 3,656,513
_03497
CCNA_03498: CCNA_03498 - MarR-family transcriptional regulator, at 3,656,510 to 3,656,806
_03498
CCNA_03499: CCNA_03499 - hypothetical protein, at 3,656,850 to 3,657,158
_03499
CCNA_03500: CCNA_03500 - FAD/FMN-containing dehydrogenase, at 3,657,155 to 3,658,564
_03500
Position (kb)
3656
3657 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3655.068 kb on + strand at 3655.068 kb on + strand at 3655.068 kb on + strand at 3655.076 kb on - strand at 3655.076 kb on - strand at 3655.076 kb on - strand at 3655.132 kb on - strand at 3655.449 kb on + strand, within CCNA_03496 at 3655.737 kb on - strand, within CCNA_03496 at 3655.872 kb on + strand at 3655.881 kb on - strand at 3655.939 kb on - strand at 3655.941 kb on + strand at 3656.118 kb on + strand, within CCNA_03497 at 3656.144 kb on + strand, within CCNA_03497 at 3656.155 kb on + strand, within CCNA_03497 at 3656.163 kb on - strand, within CCNA_03497 at 3656.168 kb on - strand, within CCNA_03497 at 3656.177 kb on - strand, within CCNA_03497 at 3656.208 kb on + strand, within CCNA_03497 at 3656.217 kb on - strand, within CCNA_03497 at 3656.225 kb on + strand, within CCNA_03497 at 3656.256 kb on - strand, within CCNA_03497 at 3656.276 kb on + strand, within CCNA_03497 at 3656.302 kb on - strand, within CCNA_03497 at 3656.338 kb on + strand, within CCNA_03497 at 3656.338 kb on + strand, within CCNA_03497 at 3656.346 kb on - strand, within CCNA_03497 at 3656.412 kb on + strand, within CCNA_03497 at 3656.498 kb on + strand at 3656.504 kb on + strand at 3656.512 kb on - strand at 3656.512 kb on - strand at 3656.512 kb on - strand at 3656.519 kb on + strand at 3656.529 kb on - strand at 3656.612 kb on + strand, within CCNA_03498 at 3656.612 kb on + strand, within CCNA_03498 at 3656.612 kb on + strand, within CCNA_03498 at 3656.612 kb on + strand, within CCNA_03498 at 3656.647 kb on + strand, within CCNA_03498 at 3656.655 kb on + strand, within CCNA_03498 at 3656.680 kb on + strand, within CCNA_03498 at 3656.728 kb on + strand, within CCNA_03498 at 3656.747 kb on + strand, within CCNA_03498 at 3656.810 kb on + strand at 3656.817 kb on + strand at 3656.825 kb on - strand at 3656.825 kb on - strand at 3656.849 kb on + strand at 3656.857 kb on + strand at 3656.857 kb on + strand at 3656.857 kb on + strand at 3656.865 kb on - strand at 3656.865 kb on - strand at 3656.865 kb on - strand at 3656.865 kb on - strand at 3656.865 kb on - strand at 3656.865 kb on - strand at 3656.874 kb on + strand at 3656.879 kb on + strand at 3656.882 kb on - strand, within CCNA_03499 at 3656.882 kb on - strand, within CCNA_03499 at 3656.890 kb on + strand, within CCNA_03499 at 3656.904 kb on + strand, within CCNA_03499 at 3656.956 kb on - strand, within CCNA_03499 at 3656.994 kb on + strand, within CCNA_03499 at 3657.002 kb on - strand, within CCNA_03499 at 3657.060 kb on + strand, within CCNA_03499 at 3657.070 kb on + strand, within CCNA_03499 at 3657.078 kb on - strand, within CCNA_03499 at 3657.140 kb on + strand at 3657.148 kb on - strand at 3657.148 kb on - strand at 3657.198 kb on - strand at 3657.245 kb on + strand at 3657.245 kb on + strand at 3657.271 kb on + strand at 3657.293 kb on + strand at 3657.296 kb on - strand, within CCNA_03500 at 3657.328 kb on - strand, within CCNA_03500 at 3657.406 kb on - strand, within CCNA_03500
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 3,655,068 + -0.7 3,655,068 + +0.7 3,655,068 + -2.0 3,655,076 - +0.8 3,655,076 - -0.0 3,655,076 - +0.3 3,655,132 - +1.8 3,655,449 + CCNA_03496 0.38 -1.1 3,655,737 - CCNA_03496 0.75 +0.6 3,655,872 + -0.2 3,655,881 - +1.1 3,655,939 - -0.2 3,655,941 + -0.1 3,656,118 + CCNA_03497 0.13 +0.4 3,656,144 + CCNA_03497 0.18 -0.2 3,656,155 + CCNA_03497 0.21 -0.3 3,656,163 - CCNA_03497 0.23 -0.8 3,656,168 - CCNA_03497 0.24 -0.1 3,656,177 - CCNA_03497 0.26 +0.3 3,656,208 + CCNA_03497 0.32 +0.1 3,656,217 - CCNA_03497 0.34 -1.6 3,656,225 + CCNA_03497 0.36 +1.8 3,656,256 - CCNA_03497 0.43 +0.5 3,656,276 + CCNA_03497 0.47 -1.9 3,656,302 - CCNA_03497 0.53 -0.8 3,656,338 + CCNA_03497 0.61 +0.3 3,656,338 + CCNA_03497 0.61 +0.4 3,656,346 - CCNA_03497 0.63 -1.7 3,656,412 + CCNA_03497 0.77 +1.7 3,656,498 + +0.3 3,656,504 + -0.4 3,656,512 - -1.2 3,656,512 - -1.6 3,656,512 - -0.5 3,656,519 + -0.2 3,656,529 - +0.0 3,656,612 + CCNA_03498 0.34 -0.4 3,656,612 + CCNA_03498 0.34 -0.0 3,656,612 + CCNA_03498 0.34 -0.2 3,656,612 + CCNA_03498 0.34 +0.3 3,656,647 + CCNA_03498 0.46 -0.3 3,656,655 + CCNA_03498 0.49 +0.3 3,656,680 + CCNA_03498 0.57 -0.3 3,656,728 + CCNA_03498 0.73 -0.9 3,656,747 + CCNA_03498 0.80 -1.2 3,656,810 + +0.4 3,656,817 + -0.3 3,656,825 - -0.4 3,656,825 - +0.7 3,656,849 + -1.7 3,656,857 + -0.2 3,656,857 + +0.4 3,656,857 + +0.7 3,656,865 - -0.5 3,656,865 - +0.1 3,656,865 - -0.5 3,656,865 - +0.5 3,656,865 - +0.0 3,656,865 - -0.4 3,656,874 + +0.4 3,656,879 + +0.5 3,656,882 - CCNA_03499 0.10 -0.6 3,656,882 - CCNA_03499 0.10 +0.2 3,656,890 + CCNA_03499 0.13 +0.6 3,656,904 + CCNA_03499 0.17 +1.0 3,656,956 - CCNA_03499 0.34 +0.1 3,656,994 + CCNA_03499 0.47 +0.0 3,657,002 - CCNA_03499 0.49 +0.4 3,657,060 + CCNA_03499 0.68 -0.9 3,657,070 + CCNA_03499 0.71 -0.5 3,657,078 - CCNA_03499 0.74 +0.2 3,657,140 + -1.0 3,657,148 - +1.3 3,657,148 - +0.4 3,657,198 - +0.3 3,657,245 + +0.1 3,657,245 + -0.0 3,657,271 + -0.2 3,657,293 + +0.6 3,657,296 - CCNA_03500 0.10 +0.4 3,657,328 - CCNA_03500 0.12 +0.3 3,657,406 - CCNA_03500 0.18 +0.6
Or see this region's nucleotide sequence