Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02834 and CCNA_02835 are separated by 48 nucleotides CCNA_02835 and CCNA_02836 overlap by 4 nucleotides CCNA_02836 and CCNA_02837 are separated by 16 nucleotides
CCNA_02834: CCNA_02834 - molybdopterin dependent oxidoreductase, at 2,987,948 to 2,988,889
_02834
CCNA_02835: CCNA_02835 - CpxP-related protein, at 2,988,938 to 2,989,567
_02835
CCNA_02836: CCNA_02836 - hypothetical protein, at 2,989,564 to 2,990,016
_02836
CCNA_02837: CCNA_02837 - RNA polymerase ECF-type sigma factor, at 2,990,033 to 2,990,593
_02837
Position (kb)
2988
2989
2990 Strain fitness (log2 ratio)
-2
-1
0
1 at 2987.998 kb on + strand at 2988.014 kb on + strand at 2988.052 kb on + strand, within CCNA_02834 at 2988.079 kb on + strand, within CCNA_02834 at 2988.105 kb on - strand, within CCNA_02834 at 2988.124 kb on + strand, within CCNA_02834 at 2988.160 kb on + strand, within CCNA_02834 at 2988.168 kb on - strand, within CCNA_02834 at 2988.168 kb on - strand, within CCNA_02834 at 2988.184 kb on + strand, within CCNA_02834 at 2988.206 kb on + strand, within CCNA_02834 at 2988.206 kb on - strand, within CCNA_02834 at 2988.219 kb on + strand, within CCNA_02834 at 2988.219 kb on + strand, within CCNA_02834 at 2988.234 kb on + strand, within CCNA_02834 at 2988.256 kb on - strand, within CCNA_02834 at 2988.257 kb on - strand, within CCNA_02834 at 2988.283 kb on + strand, within CCNA_02834 at 2988.311 kb on + strand, within CCNA_02834 at 2988.324 kb on - strand, within CCNA_02834 at 2988.335 kb on + strand, within CCNA_02834 at 2988.338 kb on - strand, within CCNA_02834 at 2988.338 kb on - strand, within CCNA_02834 at 2988.338 kb on - strand, within CCNA_02834 at 2988.343 kb on - strand, within CCNA_02834 at 2988.350 kb on + strand, within CCNA_02834 at 2988.351 kb on + strand, within CCNA_02834 at 2988.376 kb on + strand, within CCNA_02834 at 2988.399 kb on + strand, within CCNA_02834 at 2988.418 kb on + strand, within CCNA_02834 at 2988.428 kb on + strand, within CCNA_02834 at 2988.428 kb on + strand, within CCNA_02834 at 2988.436 kb on - strand, within CCNA_02834 at 2988.474 kb on + strand, within CCNA_02834 at 2988.479 kb on + strand, within CCNA_02834 at 2988.479 kb on + strand, within CCNA_02834 at 2988.479 kb on + strand, within CCNA_02834 at 2988.487 kb on - strand, within CCNA_02834 at 2988.511 kb on + strand, within CCNA_02834 at 2988.550 kb on - strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.588 kb on + strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.596 kb on - strand, within CCNA_02834 at 2988.609 kb on - strand, within CCNA_02834 at 2988.609 kb on - strand, within CCNA_02834 at 2988.662 kb on + strand, within CCNA_02834 at 2988.690 kb on - strand, within CCNA_02834 at 2988.718 kb on + strand, within CCNA_02834 at 2988.767 kb on + strand, within CCNA_02834 at 2988.844 kb on + strand at 2988.844 kb on + strand at 2988.844 kb on + strand at 2988.844 kb on + strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.852 kb on - strand at 2988.894 kb on - strand at 2988.995 kb on - strand at 2989.000 kb on - strand at 2989.005 kb on - strand, within CCNA_02835 at 2989.055 kb on - strand, within CCNA_02835 at 2989.228 kb on - strand, within CCNA_02835 at 2989.228 kb on - strand, within CCNA_02835 at 2989.305 kb on - strand, within CCNA_02835 at 2989.434 kb on - strand, within CCNA_02835 at 2989.472 kb on - strand, within CCNA_02835 at 2989.587 kb on - strand at 2989.589 kb on - strand at 2989.589 kb on - strand at 2989.636 kb on - strand, within CCNA_02836 at 2989.780 kb on + strand, within CCNA_02836 at 2989.780 kb on + strand, within CCNA_02836 at 2989.930 kb on - strand, within CCNA_02836 at 2990.048 kb on + strand at 2990.056 kb on - strand at 2990.100 kb on - strand, within CCNA_02837 at 2990.110 kb on - strand, within CCNA_02837 at 2990.169 kb on - strand, within CCNA_02837 at 2990.217 kb on + strand, within CCNA_02837 at 2990.236 kb on + strand, within CCNA_02837 at 2990.244 kb on - strand, within CCNA_02837 at 2990.284 kb on + strand, within CCNA_02837 at 2990.300 kb on + strand, within CCNA_02837 at 2990.357 kb on + strand, within CCNA_02837 at 2990.407 kb on + strand, within CCNA_02837 at 2990.415 kb on - strand, within CCNA_02837 at 2990.429 kb on + strand, within CCNA_02837 at 2990.429 kb on + strand, within CCNA_02837 at 2990.430 kb on - strand, within CCNA_02837 at 2990.507 kb on + strand, within CCNA_02837 at 2990.515 kb on - strand, within CCNA_02837 at 2990.515 kb on - strand, within CCNA_02837 at 2990.515 kb on - strand, within CCNA_02837 at 2990.519 kb on - strand, within CCNA_02837 at 2990.541 kb on + strand at 2990.545 kb on - strand at 2990.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,987,998 + -0.5 2,988,014 + +0.3 2,988,052 + CCNA_02834 0.11 +0.3 2,988,079 + CCNA_02834 0.14 -1.1 2,988,105 - CCNA_02834 0.17 -1.3 2,988,124 + CCNA_02834 0.19 +0.6 2,988,160 + CCNA_02834 0.23 +0.5 2,988,168 - CCNA_02834 0.23 +0.2 2,988,168 - CCNA_02834 0.23 +0.3 2,988,184 + CCNA_02834 0.25 +1.2 2,988,206 + CCNA_02834 0.27 -2.6 2,988,206 - CCNA_02834 0.27 -0.2 2,988,219 + CCNA_02834 0.29 -1.2 2,988,219 + CCNA_02834 0.29 -2.4 2,988,234 + CCNA_02834 0.30 -0.8 2,988,256 - CCNA_02834 0.33 +0.7 2,988,257 - CCNA_02834 0.33 +1.7 2,988,283 + CCNA_02834 0.36 -0.8 2,988,311 + CCNA_02834 0.39 -0.3 2,988,324 - CCNA_02834 0.40 +0.0 2,988,335 + CCNA_02834 0.41 +0.9 2,988,338 - CCNA_02834 0.41 -0.0 2,988,338 - CCNA_02834 0.41 -0.0 2,988,338 - CCNA_02834 0.41 +0.4 2,988,343 - CCNA_02834 0.42 -0.3 2,988,350 + CCNA_02834 0.43 -0.1 2,988,351 + CCNA_02834 0.43 -2.1 2,988,376 + CCNA_02834 0.45 +0.6 2,988,399 + CCNA_02834 0.48 +0.8 2,988,418 + CCNA_02834 0.50 -2.6 2,988,428 + CCNA_02834 0.51 +0.2 2,988,428 + CCNA_02834 0.51 +0.7 2,988,436 - CCNA_02834 0.52 -1.6 2,988,474 + CCNA_02834 0.56 -1.2 2,988,479 + CCNA_02834 0.56 -0.9 2,988,479 + CCNA_02834 0.56 +0.0 2,988,479 + CCNA_02834 0.56 -1.3 2,988,487 - CCNA_02834 0.57 -1.4 2,988,511 + CCNA_02834 0.60 +0.7 2,988,550 - CCNA_02834 0.64 -1.3 2,988,588 + CCNA_02834 0.68 +0.6 2,988,588 + CCNA_02834 0.68 -0.4 2,988,588 + CCNA_02834 0.68 -0.9 2,988,588 + CCNA_02834 0.68 +1.7 2,988,588 + CCNA_02834 0.68 -1.9 2,988,588 + CCNA_02834 0.68 -0.3 2,988,588 + CCNA_02834 0.68 +0.2 2,988,588 + CCNA_02834 0.68 -0.1 2,988,596 - CCNA_02834 0.69 +1.0 2,988,596 - CCNA_02834 0.69 +0.2 2,988,596 - CCNA_02834 0.69 +0.2 2,988,596 - CCNA_02834 0.69 -0.6 2,988,596 - CCNA_02834 0.69 -1.6 2,988,596 - CCNA_02834 0.69 -0.9 2,988,596 - CCNA_02834 0.69 +0.2 2,988,596 - CCNA_02834 0.69 +0.2 2,988,596 - CCNA_02834 0.69 -0.3 2,988,596 - CCNA_02834 0.69 +0.4 2,988,609 - CCNA_02834 0.70 +0.4 2,988,609 - CCNA_02834 0.70 -0.3 2,988,662 + CCNA_02834 0.76 -0.7 2,988,690 - CCNA_02834 0.79 -0.1 2,988,718 + CCNA_02834 0.82 +0.1 2,988,767 + CCNA_02834 0.87 -1.3 2,988,844 + -0.7 2,988,844 + +1.2 2,988,844 + +0.3 2,988,844 + -0.3 2,988,852 - -0.1 2,988,852 - -0.1 2,988,852 - -0.3 2,988,852 - +0.9 2,988,852 - -0.5 2,988,852 - +0.7 2,988,852 - +0.2 2,988,852 - +0.3 2,988,894 - -0.3 2,988,995 - -0.8 2,989,000 - -0.7 2,989,005 - CCNA_02835 0.11 -0.4 2,989,055 - CCNA_02835 0.19 +0.2 2,989,228 - CCNA_02835 0.46 +1.2 2,989,228 - CCNA_02835 0.46 -0.7 2,989,305 - CCNA_02835 0.58 -0.0 2,989,434 - CCNA_02835 0.79 -0.9 2,989,472 - CCNA_02835 0.85 -0.7 2,989,587 - +1.1 2,989,589 - +0.1 2,989,589 - +0.5 2,989,636 - CCNA_02836 0.16 +0.4 2,989,780 + CCNA_02836 0.48 -0.6 2,989,780 + CCNA_02836 0.48 -1.2 2,989,930 - CCNA_02836 0.81 +0.1 2,990,048 + +0.3 2,990,056 - +0.2 2,990,100 - CCNA_02837 0.12 +0.8 2,990,110 - CCNA_02837 0.14 -0.2 2,990,169 - CCNA_02837 0.24 -0.2 2,990,217 + CCNA_02837 0.33 -1.3 2,990,236 + CCNA_02837 0.36 +0.2 2,990,244 - CCNA_02837 0.38 +0.2 2,990,284 + CCNA_02837 0.45 -0.8 2,990,300 + CCNA_02837 0.48 -1.2 2,990,357 + CCNA_02837 0.58 -0.7 2,990,407 + CCNA_02837 0.67 -0.1 2,990,415 - CCNA_02837 0.68 +1.4 2,990,429 + CCNA_02837 0.71 +0.0 2,990,429 + CCNA_02837 0.71 -0.6 2,990,430 - CCNA_02837 0.71 -0.3 2,990,507 + CCNA_02837 0.84 -0.4 2,990,515 - CCNA_02837 0.86 +0.1 2,990,515 - CCNA_02837 0.86 +0.1 2,990,515 - CCNA_02837 0.86 -0.1 2,990,519 - CCNA_02837 0.87 +0.0 2,990,541 + -0.4 2,990,545 - -0.5 2,990,560 - +0.6
Or see this region's nucleotide sequence