Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02567 and CCNA_02568 are separated by 67 nucleotides CCNA_02568 and CCNA_02569 are separated by 322 nucleotides
CCNA_02567: CCNA_02567 - sensory transduction histidine kinase pleC, at 2,716,669 to 2,719,197
_02567
CCNA_02568: CCNA_02568 - LAO/AO transport system kinase, at 2,719,265 to 2,720,245
_02568
CCNA_02569: CCNA_02569 - glutathione S-transferase, at 2,720,568 to 2,721,197
_02569
Position (kb)
2719
2720
2721 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2718.303 kb on - strand, within CCNA_02567 at 2718.403 kb on - strand, within CCNA_02567 at 2718.426 kb on + strand, within CCNA_02567 at 2718.441 kb on + strand, within CCNA_02567 at 2718.441 kb on + strand, within CCNA_02567 at 2718.449 kb on - strand, within CCNA_02567 at 2718.449 kb on - strand, within CCNA_02567 at 2718.455 kb on - strand, within CCNA_02567 at 2718.473 kb on - strand, within CCNA_02567 at 2718.497 kb on - strand, within CCNA_02567 at 2718.501 kb on + strand, within CCNA_02567 at 2718.502 kb on - strand, within CCNA_02567 at 2718.558 kb on + strand, within CCNA_02567 at 2718.636 kb on + strand, within CCNA_02567 at 2718.646 kb on + strand, within CCNA_02567 at 2718.692 kb on - strand, within CCNA_02567 at 2718.728 kb on + strand, within CCNA_02567 at 2718.764 kb on + strand, within CCNA_02567 at 2718.785 kb on + strand, within CCNA_02567 at 2718.793 kb on - strand, within CCNA_02567 at 2718.857 kb on - strand, within CCNA_02567 at 2718.857 kb on - strand, within CCNA_02567 at 2718.904 kb on - strand, within CCNA_02567 at 2718.978 kb on - strand at 2718.990 kb on + strand at 2718.998 kb on - strand at 2719.045 kb on + strand at 2719.046 kb on + strand at 2719.053 kb on - strand at 2719.053 kb on - strand at 2719.054 kb on - strand at 2719.081 kb on + strand at 2719.135 kb on + strand at 2719.136 kb on + strand at 2719.136 kb on + strand at 2719.181 kb on + strand at 2719.219 kb on + strand at 2719.243 kb on + strand at 2719.245 kb on - strand at 2719.251 kb on - strand at 2719.262 kb on + strand at 2719.298 kb on - strand at 2719.325 kb on + strand at 2719.325 kb on + strand at 2719.325 kb on + strand at 2719.333 kb on - strand at 2719.333 kb on - strand at 2719.333 kb on - strand at 2719.338 kb on + strand at 2719.346 kb on - strand at 2719.346 kb on - strand at 2719.346 kb on - strand at 2719.346 kb on - strand at 2719.346 kb on - strand at 2719.352 kb on - strand at 2719.356 kb on - strand at 2719.450 kb on + strand, within CCNA_02568 at 2719.568 kb on - strand, within CCNA_02568 at 2719.584 kb on + strand, within CCNA_02568 at 2719.594 kb on + strand, within CCNA_02568 at 2719.599 kb on + strand, within CCNA_02568 at 2719.643 kb on + strand, within CCNA_02568 at 2719.648 kb on + strand, within CCNA_02568 at 2719.677 kb on + strand, within CCNA_02568 at 2719.695 kb on - strand, within CCNA_02568 at 2719.709 kb on - strand, within CCNA_02568 at 2719.741 kb on + strand, within CCNA_02568 at 2719.741 kb on + strand, within CCNA_02568 at 2719.766 kb on + strand, within CCNA_02568 at 2719.786 kb on + strand, within CCNA_02568 at 2719.786 kb on + strand, within CCNA_02568 at 2719.818 kb on - strand, within CCNA_02568 at 2719.834 kb on + strand, within CCNA_02568 at 2719.851 kb on - strand, within CCNA_02568 at 2719.882 kb on + strand, within CCNA_02568 at 2719.882 kb on + strand, within CCNA_02568 at 2719.919 kb on + strand, within CCNA_02568 at 2719.931 kb on - strand, within CCNA_02568 at 2719.943 kb on - strand, within CCNA_02568 at 2719.974 kb on + strand, within CCNA_02568 at 2719.979 kb on + strand, within CCNA_02568 at 2720.003 kb on - strand, within CCNA_02568 at 2720.011 kb on - strand, within CCNA_02568 at 2720.013 kb on + strand, within CCNA_02568 at 2720.078 kb on - strand, within CCNA_02568 at 2720.087 kb on + strand, within CCNA_02568 at 2720.139 kb on + strand, within CCNA_02568 at 2720.158 kb on + strand at 2720.246 kb on + strand at 2720.246 kb on + strand at 2720.256 kb on - strand at 2720.258 kb on + strand at 2720.259 kb on - strand at 2720.279 kb on - strand at 2720.326 kb on - strand at 2720.337 kb on - strand at 2720.370 kb on + strand at 2720.397 kb on - strand at 2720.436 kb on - strand at 2720.438 kb on - strand at 2720.438 kb on - strand at 2720.452 kb on - strand at 2720.461 kb on - strand at 2720.475 kb on + strand at 2720.634 kb on + strand, within CCNA_02569 at 2720.634 kb on + strand, within CCNA_02569 at 2720.637 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.642 kb on - strand, within CCNA_02569 at 2720.683 kb on + strand, within CCNA_02569 at 2720.691 kb on - strand, within CCNA_02569 at 2720.715 kb on - strand, within CCNA_02569 at 2720.800 kb on + strand, within CCNA_02569 at 2720.808 kb on - strand, within CCNA_02569 at 2720.815 kb on + strand, within CCNA_02569 at 2720.823 kb on - strand, within CCNA_02569 at 2720.825 kb on + strand, within CCNA_02569 at 2720.855 kb on + strand, within CCNA_02569 at 2720.866 kb on + strand, within CCNA_02569 at 2720.930 kb on + strand, within CCNA_02569 at 2720.938 kb on - strand, within CCNA_02569 at 2720.938 kb on - strand, within CCNA_02569 at 2720.938 kb on - strand, within CCNA_02569 at 2720.944 kb on + strand, within CCNA_02569 at 2720.959 kb on + strand, within CCNA_02569 at 2720.986 kb on + strand, within CCNA_02569 at 2721.098 kb on - strand, within CCNA_02569 at 2721.117 kb on + strand, within CCNA_02569 at 2721.125 kb on - strand, within CCNA_02569 at 2721.161 kb on + strand at 2721.206 kb on + strand at 2721.214 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,718,303 - CCNA_02567 0.65 -0.7 2,718,403 - CCNA_02567 0.69 +0.7 2,718,426 + CCNA_02567 0.69 +0.0 2,718,441 + CCNA_02567 0.70 +0.7 2,718,441 + CCNA_02567 0.70 -1.2 2,718,449 - CCNA_02567 0.70 -0.2 2,718,449 - CCNA_02567 0.70 -0.2 2,718,455 - CCNA_02567 0.71 -0.9 2,718,473 - CCNA_02567 0.71 -1.2 2,718,497 - CCNA_02567 0.72 +0.2 2,718,501 + CCNA_02567 0.72 -0.3 2,718,502 - CCNA_02567 0.72 -3.0 2,718,558 + CCNA_02567 0.75 +0.4 2,718,636 + CCNA_02567 0.78 +0.0 2,718,646 + CCNA_02567 0.78 -0.3 2,718,692 - CCNA_02567 0.80 -0.2 2,718,728 + CCNA_02567 0.81 +0.8 2,718,764 + CCNA_02567 0.83 +0.6 2,718,785 + CCNA_02567 0.84 +0.1 2,718,793 - CCNA_02567 0.84 -0.2 2,718,857 - CCNA_02567 0.87 +0.0 2,718,857 - CCNA_02567 0.87 +0.4 2,718,904 - CCNA_02567 0.88 -0.4 2,718,978 - +0.0 2,718,990 + -0.5 2,718,998 - +0.1 2,719,045 + -0.3 2,719,046 + +0.3 2,719,053 - +0.1 2,719,053 - +0.4 2,719,054 - -1.7 2,719,081 + +0.5 2,719,135 + +0.6 2,719,136 + +0.6 2,719,136 + -0.1 2,719,181 + +0.2 2,719,219 + +0.6 2,719,243 + +0.2 2,719,245 - -0.5 2,719,251 - -0.4 2,719,262 + +0.2 2,719,298 - -0.5 2,719,325 + -0.6 2,719,325 + -0.1 2,719,325 + -0.2 2,719,333 - +0.6 2,719,333 - +0.8 2,719,333 - -0.3 2,719,338 + -0.3 2,719,346 - +0.2 2,719,346 - +0.1 2,719,346 - +0.9 2,719,346 - +0.4 2,719,346 - +0.5 2,719,352 - -1.6 2,719,356 - +0.1 2,719,450 + CCNA_02568 0.19 +0.7 2,719,568 - CCNA_02568 0.31 -1.6 2,719,584 + CCNA_02568 0.33 -0.4 2,719,594 + CCNA_02568 0.34 +0.2 2,719,599 + CCNA_02568 0.34 +0.2 2,719,643 + CCNA_02568 0.39 -0.3 2,719,648 + CCNA_02568 0.39 -0.2 2,719,677 + CCNA_02568 0.42 +0.4 2,719,695 - CCNA_02568 0.44 -0.8 2,719,709 - CCNA_02568 0.45 -0.3 2,719,741 + CCNA_02568 0.49 -0.6 2,719,741 + CCNA_02568 0.49 -0.0 2,719,766 + CCNA_02568 0.51 +0.7 2,719,786 + CCNA_02568 0.53 +0.4 2,719,786 + CCNA_02568 0.53 -1.1 2,719,818 - CCNA_02568 0.56 +0.3 2,719,834 + CCNA_02568 0.58 +1.3 2,719,851 - CCNA_02568 0.60 -0.1 2,719,882 + CCNA_02568 0.63 -0.1 2,719,882 + CCNA_02568 0.63 +0.1 2,719,919 + CCNA_02568 0.67 +0.2 2,719,931 - CCNA_02568 0.68 -2.6 2,719,943 - CCNA_02568 0.69 -0.1 2,719,974 + CCNA_02568 0.72 -0.1 2,719,979 + CCNA_02568 0.73 -0.5 2,720,003 - CCNA_02568 0.75 -0.4 2,720,011 - CCNA_02568 0.76 +0.8 2,720,013 + CCNA_02568 0.76 +0.1 2,720,078 - CCNA_02568 0.83 -0.3 2,720,087 + CCNA_02568 0.84 +1.6 2,720,139 + CCNA_02568 0.89 -0.6 2,720,158 + +0.4 2,720,246 + -0.1 2,720,246 + -0.5 2,720,256 - +0.4 2,720,258 + +1.0 2,720,259 - +1.1 2,720,279 - +0.7 2,720,326 - +1.0 2,720,337 - +0.2 2,720,370 + -0.4 2,720,397 - -0.4 2,720,436 - -0.5 2,720,438 - -0.4 2,720,438 - -0.1 2,720,452 - -1.0 2,720,461 - -0.2 2,720,475 + -0.8 2,720,634 + CCNA_02569 0.10 -0.1 2,720,634 + CCNA_02569 0.10 -0.3 2,720,637 - CCNA_02569 0.11 -1.7 2,720,642 - CCNA_02569 0.12 -1.5 2,720,642 - CCNA_02569 0.12 +1.0 2,720,642 - CCNA_02569 0.12 +0.2 2,720,642 - CCNA_02569 0.12 +0.1 2,720,642 - CCNA_02569 0.12 +0.2 2,720,683 + CCNA_02569 0.18 -0.5 2,720,691 - CCNA_02569 0.20 -1.0 2,720,715 - CCNA_02569 0.23 +0.2 2,720,800 + CCNA_02569 0.37 +0.9 2,720,808 - CCNA_02569 0.38 -0.4 2,720,815 + CCNA_02569 0.39 +0.2 2,720,823 - CCNA_02569 0.40 -0.2 2,720,825 + CCNA_02569 0.41 +0.4 2,720,855 + CCNA_02569 0.46 +0.4 2,720,866 + CCNA_02569 0.47 -0.9 2,720,930 + CCNA_02569 0.57 -1.8 2,720,938 - CCNA_02569 0.59 -1.4 2,720,938 - CCNA_02569 0.59 +1.0 2,720,938 - CCNA_02569 0.59 +0.8 2,720,944 + CCNA_02569 0.60 -0.2 2,720,959 + CCNA_02569 0.62 -1.3 2,720,986 + CCNA_02569 0.66 +0.8 2,721,098 - CCNA_02569 0.84 -0.5 2,721,117 + CCNA_02569 0.87 -0.9 2,721,125 - CCNA_02569 0.88 -1.3 2,721,161 + -1.1 2,721,206 + +0.3 2,721,214 - -1.3
Or see this region's nucleotide sequence