Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02331

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02329 and CCNA_02330 are separated by 27 nucleotidesCCNA_02330 and CCNA_02331 overlap by 16 nucleotidesCCNA_02331 and CCNA_02332 are separated by 135 nucleotidesCCNA_02332 and CCNA_02333 overlap by 4 nucleotides CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748 _02329 CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991 _02330 CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827 _02331 CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481 _02332 CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422 _02333 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -2 -1 0 1 2at 2472.723 kb on + strandat 2472.736 kb on - strandat 2472.826 kb on + strand, within CCNA_02330at 2472.853 kb on + strand, within CCNA_02330at 2472.867 kb on + strand, within CCNA_02330at 2472.872 kb on + strand, within CCNA_02330at 2472.935 kb on - strand, within CCNA_02330at 2472.951 kb on - strand, within CCNA_02330at 2473.003 kb on + strandat 2473.011 kb on - strandat 2473.011 kb on - strandat 2473.030 kb on + strandat 2473.043 kb on - strandat 2473.113 kb on - strand, within CCNA_02331at 2473.127 kb on + strand, within CCNA_02331at 2473.145 kb on + strand, within CCNA_02331at 2473.227 kb on - strand, within CCNA_02331at 2473.315 kb on + strand, within CCNA_02331at 2473.339 kb on + strand, within CCNA_02331at 2473.467 kb on - strand, within CCNA_02331at 2473.514 kb on + strand, within CCNA_02331at 2473.514 kb on - strand, within CCNA_02331at 2473.588 kb on + strand, within CCNA_02331at 2473.601 kb on - strand, within CCNA_02331at 2473.627 kb on + strand, within CCNA_02331at 2473.633 kb on + strand, within CCNA_02331at 2473.635 kb on - strand, within CCNA_02331at 2473.641 kb on - strand, within CCNA_02331at 2473.714 kb on - strand, within CCNA_02331at 2473.747 kb on + strandat 2473.774 kb on + strandat 2473.781 kb on + strandat 2473.816 kb on + strandat 2473.901 kb on + strandat 2473.933 kb on - strandat 2473.955 kb on + strandat 2474.040 kb on + strand, within CCNA_02332at 2474.040 kb on + strand, within CCNA_02332at 2474.054 kb on + strand, within CCNA_02332at 2474.095 kb on + strand, within CCNA_02332at 2474.273 kb on + strand, within CCNA_02332at 2474.292 kb on - strand, within CCNA_02332at 2474.328 kb on - strand, within CCNA_02332at 2474.328 kb on - strand, within CCNA_02332at 2474.331 kb on + strand, within CCNA_02332at 2474.389 kb on - strand, within CCNA_02332at 2474.405 kb on + strand, within CCNA_02332at 2474.443 kb on + strandat 2474.514 kb on - strandat 2474.514 kb on - strandat 2474.529 kb on - strandat 2474.529 kb on - strandat 2474.539 kb on - strandat 2474.809 kb on + strand, within CCNA_02333

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,472,723 + +0.4
2,472,736 - +0.4
2,472,826 + CCNA_02330 0.23 -0.2
2,472,853 + CCNA_02330 0.36 +0.6
2,472,867 + CCNA_02330 0.42 +0.3
2,472,872 + CCNA_02330 0.44 +0.3
2,472,935 - CCNA_02330 0.74 +0.0
2,472,951 - CCNA_02330 0.81 +0.3
2,473,003 + +1.1
2,473,011 - +0.0
2,473,011 - -0.6
2,473,030 + +0.1
2,473,043 - -0.6
2,473,113 - CCNA_02331 0.16 +0.2
2,473,127 + CCNA_02331 0.18 +0.7
2,473,145 + CCNA_02331 0.20 +0.2
2,473,227 - CCNA_02331 0.29 -0.9
2,473,315 + CCNA_02331 0.40 -0.4
2,473,339 + CCNA_02331 0.43 +0.2
2,473,467 - CCNA_02331 0.58 -0.3
2,473,514 + CCNA_02331 0.63 +0.5
2,473,514 - CCNA_02331 0.63 +2.1
2,473,588 + CCNA_02331 0.72 +0.0
2,473,601 - CCNA_02331 0.73 -0.3
2,473,627 + CCNA_02331 0.76 +0.3
2,473,633 + CCNA_02331 0.77 +0.9
2,473,635 - CCNA_02331 0.77 -1.0
2,473,641 - CCNA_02331 0.78 -0.6
2,473,714 - CCNA_02331 0.87 +0.0
2,473,747 + +0.4
2,473,774 + -0.8
2,473,781 + +2.4
2,473,816 + +0.5
2,473,901 + +0.4
2,473,933 - +0.9
2,473,955 + -0.7
2,474,040 + CCNA_02332 0.15 -0.2
2,474,040 + CCNA_02332 0.15 -0.3
2,474,054 + CCNA_02332 0.18 +0.1
2,474,095 + CCNA_02332 0.25 +0.2
2,474,273 + CCNA_02332 0.60 -1.9
2,474,292 - CCNA_02332 0.63 -0.4
2,474,328 - CCNA_02332 0.70 +0.0
2,474,328 - CCNA_02332 0.70 +0.1
2,474,331 + CCNA_02332 0.71 +0.4
2,474,389 - CCNA_02332 0.82 +1.1
2,474,405 + CCNA_02332 0.85 +1.1
2,474,443 + +0.5
2,474,514 - +0.3
2,474,514 - +0.7
2,474,529 - +0.7
2,474,529 - +0.2
2,474,539 - +0.1
2,474,809 + CCNA_02333 0.35 +2.4

Or see this region's nucleotide sequence