Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02329 and CCNA_02330 are separated by 27 nucleotides CCNA_02330 and CCNA_02331 overlap by 16 nucleotides CCNA_02331 and CCNA_02332 are separated by 135 nucleotides CCNA_02332 and CCNA_02333 overlap by 4 nucleotides
CCNA_02329: CCNA_02329 - exodeoxyribonuclease VII large subunit, at 2,471,231 to 2,472,748
_02329
CCNA_02330: CCNA_02330 - hypothetical protein, at 2,472,776 to 2,472,991
_02330
CCNA_02331: CCNA_02331 - peptidoglycan-specific endopeptidase, M23 family, at 2,472,976 to 2,473,827
_02331
CCNA_02332: CCNA_02332 - chemotaxis receiver protein cheYIII, at 2,473,963 to 2,474,481
_02332
CCNA_02333: CCNA_02333 - lipid A biosynthesis lauroyl acyltransferase, at 2,474,478 to 2,475,422
_02333
Position (kb)
2472
2473
2474 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2472.723 kb on + strand at 2472.736 kb on - strand at 2472.826 kb on + strand, within CCNA_02330 at 2472.853 kb on + strand, within CCNA_02330 at 2472.867 kb on + strand, within CCNA_02330 at 2472.872 kb on + strand, within CCNA_02330 at 2472.935 kb on - strand, within CCNA_02330 at 2472.951 kb on - strand, within CCNA_02330 at 2473.003 kb on + strand at 2473.011 kb on - strand at 2473.011 kb on - strand at 2473.030 kb on + strand at 2473.043 kb on - strand at 2473.113 kb on - strand, within CCNA_02331 at 2473.127 kb on + strand, within CCNA_02331 at 2473.145 kb on + strand, within CCNA_02331 at 2473.227 kb on - strand, within CCNA_02331 at 2473.315 kb on + strand, within CCNA_02331 at 2473.339 kb on + strand, within CCNA_02331 at 2473.467 kb on - strand, within CCNA_02331 at 2473.514 kb on + strand, within CCNA_02331 at 2473.514 kb on - strand, within CCNA_02331 at 2473.588 kb on + strand, within CCNA_02331 at 2473.601 kb on - strand, within CCNA_02331 at 2473.627 kb on + strand, within CCNA_02331 at 2473.633 kb on + strand, within CCNA_02331 at 2473.635 kb on - strand, within CCNA_02331 at 2473.641 kb on - strand, within CCNA_02331 at 2473.714 kb on - strand, within CCNA_02331 at 2473.747 kb on + strand at 2473.774 kb on + strand at 2473.781 kb on + strand at 2473.816 kb on + strand at 2473.901 kb on + strand at 2473.933 kb on - strand at 2473.955 kb on + strand at 2474.040 kb on + strand, within CCNA_02332 at 2474.040 kb on + strand, within CCNA_02332 at 2474.054 kb on + strand, within CCNA_02332 at 2474.095 kb on + strand, within CCNA_02332 at 2474.273 kb on + strand, within CCNA_02332 at 2474.292 kb on - strand, within CCNA_02332 at 2474.328 kb on - strand, within CCNA_02332 at 2474.328 kb on - strand, within CCNA_02332 at 2474.331 kb on + strand, within CCNA_02332 at 2474.389 kb on - strand, within CCNA_02332 at 2474.405 kb on + strand, within CCNA_02332 at 2474.443 kb on + strand at 2474.514 kb on - strand at 2474.514 kb on - strand at 2474.529 kb on - strand at 2474.529 kb on - strand at 2474.539 kb on - strand at 2474.809 kb on + strand, within CCNA_02333
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,472,723 + +0.4 2,472,736 - +0.4 2,472,826 + CCNA_02330 0.23 -0.2 2,472,853 + CCNA_02330 0.36 +0.6 2,472,867 + CCNA_02330 0.42 +0.3 2,472,872 + CCNA_02330 0.44 +0.3 2,472,935 - CCNA_02330 0.74 +0.0 2,472,951 - CCNA_02330 0.81 +0.3 2,473,003 + +1.1 2,473,011 - +0.0 2,473,011 - -0.6 2,473,030 + +0.1 2,473,043 - -0.6 2,473,113 - CCNA_02331 0.16 +0.2 2,473,127 + CCNA_02331 0.18 +0.7 2,473,145 + CCNA_02331 0.20 +0.2 2,473,227 - CCNA_02331 0.29 -0.9 2,473,315 + CCNA_02331 0.40 -0.4 2,473,339 + CCNA_02331 0.43 +0.2 2,473,467 - CCNA_02331 0.58 -0.3 2,473,514 + CCNA_02331 0.63 +0.5 2,473,514 - CCNA_02331 0.63 +2.1 2,473,588 + CCNA_02331 0.72 +0.0 2,473,601 - CCNA_02331 0.73 -0.3 2,473,627 + CCNA_02331 0.76 +0.3 2,473,633 + CCNA_02331 0.77 +0.9 2,473,635 - CCNA_02331 0.77 -1.0 2,473,641 - CCNA_02331 0.78 -0.6 2,473,714 - CCNA_02331 0.87 +0.0 2,473,747 + +0.4 2,473,774 + -0.8 2,473,781 + +2.4 2,473,816 + +0.5 2,473,901 + +0.4 2,473,933 - +0.9 2,473,955 + -0.7 2,474,040 + CCNA_02332 0.15 -0.2 2,474,040 + CCNA_02332 0.15 -0.3 2,474,054 + CCNA_02332 0.18 +0.1 2,474,095 + CCNA_02332 0.25 +0.2 2,474,273 + CCNA_02332 0.60 -1.9 2,474,292 - CCNA_02332 0.63 -0.4 2,474,328 - CCNA_02332 0.70 +0.0 2,474,328 - CCNA_02332 0.70 +0.1 2,474,331 + CCNA_02332 0.71 +0.4 2,474,389 - CCNA_02332 0.82 +1.1 2,474,405 + CCNA_02332 0.85 +1.1 2,474,443 + +0.5 2,474,514 - +0.3 2,474,514 - +0.7 2,474,529 - +0.7 2,474,529 - +0.2 2,474,539 - +0.1 2,474,809 + CCNA_02333 0.35 +2.4
Or see this region's nucleotide sequence