Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02180 and CCNA_02181 are separated by 87 nucleotides CCNA_02181 and CCNA_02182 overlap by 4 nucleotides CCNA_02182 and CCNA_02183 overlap by 20 nucleotides
CCNA_02180: CCNA_02180 - iron-sulfur cluster assembly/repair protein ApbC, at 2,331,553 to 2,332,653
_02180
CCNA_02181: CCNA_02181 - phosphatase/phosphohexomutase family protein, at 2,332,741 to 2,333,406
_02181
CCNA_02182: CCNA_02182 - phosphoserine phosphatase, at 2,333,403 to 2,334,281
_02182
CCNA_02183: CCNA_02183 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,334,262 to 2,335,152
_02183
Position (kb)
2332
2333
2334 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2332.354 kb on - strand, within CCNA_02180 at 2332.718 kb on - strand at 2332.744 kb on + strand at 2332.799 kb on + strand at 2332.801 kb on - strand at 2332.850 kb on - strand, within CCNA_02181 at 2332.850 kb on - strand, within CCNA_02181 at 2333.008 kb on + strand, within CCNA_02181 at 2333.022 kb on + strand, within CCNA_02181 at 2333.030 kb on - strand, within CCNA_02181 at 2333.041 kb on + strand, within CCNA_02181 at 2333.044 kb on - strand, within CCNA_02181 at 2333.070 kb on + strand, within CCNA_02181 at 2333.088 kb on + strand, within CCNA_02181 at 2333.096 kb on - strand, within CCNA_02181 at 2333.103 kb on - strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.171 kb on + strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.179 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.199 kb on - strand, within CCNA_02181 at 2333.214 kb on - strand, within CCNA_02181 at 2333.229 kb on + strand, within CCNA_02181 at 2333.233 kb on + strand, within CCNA_02181 at 2333.245 kb on - strand, within CCNA_02181 at 2333.259 kb on - strand, within CCNA_02181 at 2333.290 kb on + strand, within CCNA_02181 at 2333.296 kb on + strand, within CCNA_02181 at 2333.345 kb on + strand at 2333.376 kb on - strand at 2333.381 kb on + strand at 2333.422 kb on + strand at 2333.423 kb on - strand at 2333.430 kb on - strand at 2333.432 kb on + strand at 2333.465 kb on + strand at 2333.478 kb on - strand at 2333.478 kb on - strand at 2333.520 kb on + strand, within CCNA_02182 at 2333.570 kb on + strand, within CCNA_02182 at 2333.578 kb on + strand, within CCNA_02182 at 2333.594 kb on + strand, within CCNA_02182 at 2333.594 kb on + strand, within CCNA_02182 at 2333.597 kb on - strand, within CCNA_02182 at 2333.663 kb on - strand, within CCNA_02182 at 2333.670 kb on + strand, within CCNA_02182 at 2333.677 kb on + strand, within CCNA_02182 at 2333.678 kb on - strand, within CCNA_02182 at 2333.709 kb on + strand, within CCNA_02182 at 2333.717 kb on - strand, within CCNA_02182 at 2333.772 kb on - strand, within CCNA_02182 at 2333.790 kb on - strand, within CCNA_02182 at 2333.811 kb on - strand, within CCNA_02182 at 2333.846 kb on + strand, within CCNA_02182 at 2333.898 kb on - strand, within CCNA_02182 at 2334.018 kb on - strand, within CCNA_02182 at 2334.042 kb on + strand, within CCNA_02182 at 2334.127 kb on + strand, within CCNA_02182 at 2334.161 kb on + strand, within CCNA_02182 at 2334.162 kb on + strand, within CCNA_02182 at 2334.163 kb on + strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.178 kb on + strand, within CCNA_02182 at 2334.183 kb on + strand, within CCNA_02182 at 2334.193 kb on + strand, within CCNA_02182 at 2334.215 kb on + strand at 2334.223 kb on + strand at 2334.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,332,354 - CCNA_02180 0.73 -0.0 2,332,718 - -0.3 2,332,744 + -1.0 2,332,799 + -1.2 2,332,801 - +0.2 2,332,850 - CCNA_02181 0.16 -0.4 2,332,850 - CCNA_02181 0.16 -0.2 2,333,008 + CCNA_02181 0.40 -0.9 2,333,022 + CCNA_02181 0.42 -1.2 2,333,030 - CCNA_02181 0.43 -0.1 2,333,041 + CCNA_02181 0.45 -0.6 2,333,044 - CCNA_02181 0.45 -1.1 2,333,070 + CCNA_02181 0.49 -0.2 2,333,088 + CCNA_02181 0.52 -1.8 2,333,096 - CCNA_02181 0.53 +0.5 2,333,103 - CCNA_02181 0.54 -0.2 2,333,171 + CCNA_02181 0.65 -0.1 2,333,171 + CCNA_02181 0.65 +0.0 2,333,171 + CCNA_02181 0.65 +0.1 2,333,179 - CCNA_02181 0.66 -0.7 2,333,179 - CCNA_02181 0.66 +0.5 2,333,179 - CCNA_02181 0.66 +0.6 2,333,179 - CCNA_02181 0.66 +2.2 2,333,179 - CCNA_02181 0.66 +0.3 2,333,179 - CCNA_02181 0.66 -0.5 2,333,179 - CCNA_02181 0.66 +0.5 2,333,179 - CCNA_02181 0.66 +1.0 2,333,199 - CCNA_02181 0.69 +0.7 2,333,199 - CCNA_02181 0.69 +0.6 2,333,199 - CCNA_02181 0.69 +0.6 2,333,214 - CCNA_02181 0.71 +1.1 2,333,229 + CCNA_02181 0.73 -0.5 2,333,233 + CCNA_02181 0.74 +1.2 2,333,245 - CCNA_02181 0.76 -0.8 2,333,259 - CCNA_02181 0.78 +1.1 2,333,290 + CCNA_02181 0.82 +0.0 2,333,296 + CCNA_02181 0.83 -1.5 2,333,345 + +0.6 2,333,376 - +0.1 2,333,381 + +0.0 2,333,422 + -0.5 2,333,423 - +0.6 2,333,430 - +0.2 2,333,432 + -0.2 2,333,465 + +0.3 2,333,478 - +0.6 2,333,478 - +0.4 2,333,520 + CCNA_02182 0.13 -1.5 2,333,570 + CCNA_02182 0.19 +1.9 2,333,578 + CCNA_02182 0.20 -1.8 2,333,594 + CCNA_02182 0.22 -0.1 2,333,594 + CCNA_02182 0.22 -1.3 2,333,597 - CCNA_02182 0.22 -0.3 2,333,663 - CCNA_02182 0.30 +1.1 2,333,670 + CCNA_02182 0.30 -1.0 2,333,677 + CCNA_02182 0.31 -2.7 2,333,678 - CCNA_02182 0.31 +0.7 2,333,709 + CCNA_02182 0.35 -1.0 2,333,717 - CCNA_02182 0.36 -0.2 2,333,772 - CCNA_02182 0.42 +0.8 2,333,790 - CCNA_02182 0.44 +0.3 2,333,811 - CCNA_02182 0.46 -0.2 2,333,846 + CCNA_02182 0.50 +0.4 2,333,898 - CCNA_02182 0.56 +0.8 2,334,018 - CCNA_02182 0.70 +0.5 2,334,042 + CCNA_02182 0.73 -1.6 2,334,127 + CCNA_02182 0.82 +0.2 2,334,161 + CCNA_02182 0.86 +0.3 2,334,162 + CCNA_02182 0.86 -0.5 2,334,163 + CCNA_02182 0.86 +0.2 2,334,170 - CCNA_02182 0.87 +0.0 2,334,170 - CCNA_02182 0.87 +0.0 2,334,170 - CCNA_02182 0.87 +0.8 2,334,178 + CCNA_02182 0.88 +0.4 2,334,183 + CCNA_02182 0.89 -0.0 2,334,193 + CCNA_02182 0.90 -0.0 2,334,215 + +0.2 2,334,223 + +0.4 2,334,223 + -0.8
Or see this region's nucleotide sequence