Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02019

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02017 and CCNA_02018 are separated by 8 nucleotidesCCNA_02018 and CCNA_02019 overlap by 4 nucleotidesCCNA_02019 and CCNA_02020 are separated by 82 nucleotidesCCNA_02020 and CCNA_03961 are separated by 10 nucleotidesCCNA_03961 and CCNA_02021 overlap by 4 nucleotides CCNA_02017: CCNA_02017 - NADH-quinone oxidoreductase chain L, at 2,164,265 to 2,166,325 _02017 CCNA_02018: CCNA_02018 - NADH-quinone oxidoreductase chain K, at 2,166,334 to 2,166,639 _02018 CCNA_02019: CCNA_02019 - NADH-quinone oxidoreductase chain J, at 2,166,636 to 2,167,253 _02019 CCNA_02020: CCNA_02020 - NADH-quinone oxidoreductase chain I, at 2,167,336 to 2,167,827 _02020 CCNA_03961: CCNA_03961 - hypothetical protein, at 2,167,838 to 2,168,062 _03961 CCNA_02021: CCNA_02021 - hypothetical protein, at 2,168,059 to 2,168,298 _02021 Position (kb) 2166 2167 2168Strain fitness (log2 ratio) -1 0 1 2at 2166.682 kb on - strandat 2166.682 kb on - strandat 2167.877 kb on - strand, within CCNA_03961at 2167.877 kb on - strand, within CCNA_03961at 2167.946 kb on - strand, within CCNA_03961at 2167.946 kb on - strand, within CCNA_03961at 2167.946 kb on - strand, within CCNA_03961at 2167.959 kb on - strand, within CCNA_03961at 2168.050 kb on - strandat 2168.063 kb on + strandat 2168.071 kb on - strandat 2168.108 kb on + strand, within CCNA_02021at 2168.111 kb on - strand, within CCNA_02021at 2168.114 kb on + strand, within CCNA_02021at 2168.122 kb on - strand, within CCNA_02021at 2168.137 kb on - strand, within CCNA_02021at 2168.150 kb on + strand, within CCNA_02021at 2168.150 kb on - strand, within CCNA_02021at 2168.158 kb on - strand, within CCNA_02021at 2168.158 kb on - strand, within CCNA_02021at 2168.218 kb on - strand, within CCNA_02021

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,166,682 - +0.1
2,166,682 - -0.5
2,167,877 - CCNA_03961 0.17 +0.3
2,167,877 - CCNA_03961 0.17 +0.3
2,167,946 - CCNA_03961 0.48 +0.8
2,167,946 - CCNA_03961 0.48 +0.1
2,167,946 - CCNA_03961 0.48 +0.7
2,167,959 - CCNA_03961 0.54 +1.7
2,168,050 - -0.4
2,168,063 + -0.3
2,168,071 - +0.7
2,168,108 + CCNA_02021 0.20 -1.7
2,168,111 - CCNA_02021 0.22 +1.4
2,168,114 + CCNA_02021 0.23 +2.0
2,168,122 - CCNA_02021 0.26 +0.6
2,168,137 - CCNA_02021 0.33 +0.7
2,168,150 + CCNA_02021 0.38 +0.7
2,168,150 - CCNA_02021 0.38 +1.1
2,168,158 - CCNA_02021 0.41 +0.9
2,168,158 - CCNA_02021 0.41 +0.8
2,168,218 - CCNA_02021 0.66 -0.3

Or see this region's nucleotide sequence