Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01992

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01990 and CCNA_01991 are separated by 53 nucleotidesCCNA_01991 and CCNA_01992 are separated by 2 nucleotidesCCNA_01992 and CCNA_01993 are separated by 17 nucleotides CCNA_01990: CCNA_01990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, at 2,135,602 to 2,136,621 _01990 CCNA_01991: CCNA_01991 - OmpH-like outer membrane protein, at 2,136,675 to 2,137,313 _01991 CCNA_01992: CCNA_01992 - beta-barrel assembly machine (BAM) protein BamA, at 2,137,316 to 2,139,679 _01992 CCNA_01993: CCNA_01993 - membrane endopeptidase MmpA, at 2,139,697 to 2,140,974 _01993 Position (kb) 2137 2138 2139 2140Strain fitness (log2 ratio) -1 0 1at 2139.756 kb on - strandat 2139.786 kb on - strandat 2139.792 kb on - strandat 2139.807 kb on - strandat 2140.069 kb on - strand, within CCNA_01993at 2140.074 kb on - strand, within CCNA_01993at 2140.156 kb on - strand, within CCNA_01993at 2140.253 kb on - strand, within CCNA_01993at 2140.277 kb on - strand, within CCNA_01993at 2140.344 kb on - strand, within CCNA_01993at 2140.503 kb on - strand, within CCNA_01993

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,139,756 - +1.4
2,139,786 - +0.6
2,139,792 - +0.1
2,139,807 - +0.4
2,140,069 - CCNA_01993 0.29 +0.8
2,140,074 - CCNA_01993 0.29 +0.3
2,140,156 - CCNA_01993 0.36 +0.5
2,140,253 - CCNA_01993 0.44 +0.4
2,140,277 - CCNA_01993 0.45 +0.4
2,140,344 - CCNA_01993 0.51 +0.2
2,140,503 - CCNA_01993 0.63 +0.7

Or see this region's nucleotide sequence