Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_R0039 and CCNA_01457 are separated by 690 nucleotides CCNA_01457 and CCNA_01458 are separated by 2 nucleotides CCNA_01458 and CCNA_01459 are separated by 0 nucleotides CCNA_01459 and CCNA_01460 are separated by 72 nucleotides CCNA_01460 and CCNA_01461 are separated by 27 nucleotides
CCNA_R0039: CCNA_R0039 - tRNA-Arg, at 1,566,858 to 1,566,934
_R0039
CCNA_01457: CCNA_01457 - hypothetical protein, at 1,567,625 to 1,567,876
_01457
CCNA_01458: CCNA_01458 - hypothetical protein, at 1,567,879 to 1,568,187
_01458
CCNA_01459: CCNA_01459 - hypothetical protein, at 1,568,188 to 1,568,445
_01459
CCNA_01460: CCNA_01460 - hypothetical protein, at 1,568,518 to 1,568,736
_01460
CCNA_01461: CCNA_01461 - hypothetical protein, at 1,568,764 to 1,569,069
_01461
Position (kb)
1567
1568
1569 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1567.018 kb on + strand at 1567.095 kb on + strand at 1567.097 kb on - strand at 1567.102 kb on - strand at 1567.102 kb on - strand at 1567.173 kb on + strand at 1567.225 kb on + strand at 1567.240 kb on + strand at 1567.243 kb on - strand at 1567.248 kb on - strand at 1567.269 kb on - strand at 1567.320 kb on + strand at 1567.379 kb on - strand at 1567.532 kb on + strand at 1567.684 kb on - strand, within CCNA_01457 at 1567.693 kb on - strand, within CCNA_01457 at 1567.706 kb on + strand, within CCNA_01457 at 1567.818 kb on + strand, within CCNA_01457 at 1567.857 kb on - strand at 1567.860 kb on + strand at 1568.005 kb on - strand, within CCNA_01458 at 1568.024 kb on + strand, within CCNA_01458 at 1568.027 kb on - strand, within CCNA_01458 at 1568.057 kb on + strand, within CCNA_01458 at 1568.057 kb on + strand, within CCNA_01458 at 1568.094 kb on - strand, within CCNA_01458 at 1568.099 kb on - strand, within CCNA_01458 at 1568.130 kb on + strand, within CCNA_01458 at 1568.135 kb on + strand, within CCNA_01458 at 1568.135 kb on + strand, within CCNA_01458 at 1568.153 kb on - strand, within CCNA_01458 at 1568.225 kb on + strand, within CCNA_01459 at 1568.235 kb on - strand, within CCNA_01459 at 1568.235 kb on - strand, within CCNA_01459 at 1568.240 kb on + strand, within CCNA_01459 at 1568.240 kb on + strand, within CCNA_01459 at 1568.248 kb on - strand, within CCNA_01459 at 1568.248 kb on - strand, within CCNA_01459 at 1568.250 kb on + strand, within CCNA_01459 at 1568.269 kb on + strand, within CCNA_01459 at 1568.339 kb on + strand, within CCNA_01459 at 1568.361 kb on + strand, within CCNA_01459 at 1568.433 kb on + strand at 1568.433 kb on - strand at 1568.440 kb on + strand at 1568.500 kb on - strand at 1568.628 kb on + strand, within CCNA_01460 at 1568.663 kb on + strand, within CCNA_01460 at 1568.666 kb on - strand, within CCNA_01460 at 1568.671 kb on - strand, within CCNA_01460 at 1568.671 kb on - strand, within CCNA_01460 at 1568.681 kb on - strand, within CCNA_01460 at 1568.704 kb on - strand, within CCNA_01460 at 1568.732 kb on + strand at 1568.734 kb on + strand at 1568.752 kb on - strand at 1568.805 kb on - strand, within CCNA_01461 at 1568.831 kb on + strand, within CCNA_01461 at 1568.839 kb on - strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.907 kb on + strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.915 kb on - strand, within CCNA_01461 at 1568.941 kb on - strand, within CCNA_01461 at 1568.952 kb on + strand, within CCNA_01461 at 1568.952 kb on + strand, within CCNA_01461 at 1568.953 kb on + strand, within CCNA_01461 at 1568.961 kb on - strand, within CCNA_01461 at 1569.055 kb on + strand at 1569.063 kb on - strand at 1569.065 kb on + strand at 1569.091 kb on + strand at 1569.092 kb on - strand at 1569.092 kb on - strand at 1569.119 kb on - strand at 1569.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 1,567,018 + +0.8 1,567,095 + -0.1 1,567,097 - -0.7 1,567,102 - -1.0 1,567,102 - +0.2 1,567,173 + +0.5 1,567,225 + +0.8 1,567,240 + +0.2 1,567,243 - -1.2 1,567,248 - +0.1 1,567,269 - -0.5 1,567,320 + +0.4 1,567,379 - +0.9 1,567,532 + +0.7 1,567,684 - CCNA_01457 0.23 -0.1 1,567,693 - CCNA_01457 0.27 -0.1 1,567,706 + CCNA_01457 0.32 -1.2 1,567,818 + CCNA_01457 0.77 +0.2 1,567,857 - -0.0 1,567,860 + +1.0 1,568,005 - CCNA_01458 0.41 +0.6 1,568,024 + CCNA_01458 0.47 -0.2 1,568,027 - CCNA_01458 0.48 +1.0 1,568,057 + CCNA_01458 0.58 -0.3 1,568,057 + CCNA_01458 0.58 -1.0 1,568,094 - CCNA_01458 0.70 +0.5 1,568,099 - CCNA_01458 0.71 -0.2 1,568,130 + CCNA_01458 0.81 -0.3 1,568,135 + CCNA_01458 0.83 +0.9 1,568,135 + CCNA_01458 0.83 +0.4 1,568,153 - CCNA_01458 0.89 +1.0 1,568,225 + CCNA_01459 0.14 +0.9 1,568,235 - CCNA_01459 0.18 +0.0 1,568,235 - CCNA_01459 0.18 +0.3 1,568,240 + CCNA_01459 0.20 -0.1 1,568,240 + CCNA_01459 0.20 +0.8 1,568,248 - CCNA_01459 0.23 -0.3 1,568,248 - CCNA_01459 0.23 -0.1 1,568,250 + CCNA_01459 0.24 +0.6 1,568,269 + CCNA_01459 0.31 +1.0 1,568,339 + CCNA_01459 0.59 -0.2 1,568,361 + CCNA_01459 0.67 -0.1 1,568,433 + +0.6 1,568,433 - -0.4 1,568,440 + -0.5 1,568,500 - +0.9 1,568,628 + CCNA_01460 0.50 +0.6 1,568,663 + CCNA_01460 0.66 -0.2 1,568,666 - CCNA_01460 0.68 -0.3 1,568,671 - CCNA_01460 0.70 +0.8 1,568,671 - CCNA_01460 0.70 +0.3 1,568,681 - CCNA_01460 0.74 +0.7 1,568,704 - CCNA_01460 0.85 -0.8 1,568,732 + -0.2 1,568,734 + +0.0 1,568,752 - -1.2 1,568,805 - CCNA_01461 0.13 -1.3 1,568,831 + CCNA_01461 0.22 -1.5 1,568,839 - CCNA_01461 0.25 +0.0 1,568,907 + CCNA_01461 0.47 -1.5 1,568,907 + CCNA_01461 0.47 -1.1 1,568,907 + CCNA_01461 0.47 -0.3 1,568,907 + CCNA_01461 0.47 -0.3 1,568,915 - CCNA_01461 0.49 -0.3 1,568,915 - CCNA_01461 0.49 -2.8 1,568,915 - CCNA_01461 0.49 +1.5 1,568,915 - CCNA_01461 0.49 +0.7 1,568,915 - CCNA_01461 0.49 -0.9 1,568,915 - CCNA_01461 0.49 +1.0 1,568,915 - CCNA_01461 0.49 -0.4 1,568,915 - CCNA_01461 0.49 -0.8 1,568,941 - CCNA_01461 0.58 -1.8 1,568,952 + CCNA_01461 0.61 -1.1 1,568,952 + CCNA_01461 0.61 +1.0 1,568,953 + CCNA_01461 0.62 -0.7 1,568,961 - CCNA_01461 0.64 +0.1 1,569,055 + +1.3 1,569,063 - -0.1 1,569,065 + -0.2 1,569,091 + +0.8 1,569,092 - -2.6 1,569,092 - -2.3 1,569,119 - -0.7 1,569,169 + +0.4
Or see this region's nucleotide sequence