Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01399 and CCNA_01400 are separated by 26 nucleotides CCNA_01400 and CCNA_01403 are separated by 480 nucleotides
CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088
_01399
CCNA_01400: CCNA_01400 - nitrogen regulatory protein GlnK, at 1,520,115 to 1,520,453
_01400
CCNA_01403: CCNA_01403 - glycyl-tRNA synthetase alpha chain, at 1,520,934 to 1,521,833
_01403
Position (kb)
1520
1521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.196 kb on + strand, within CCNA_01399 at 1519.201 kb on + strand, within CCNA_01399 at 1519.204 kb on - strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.227 kb on + strand, within CCNA_01399 at 1519.227 kb on + strand, within CCNA_01399 at 1519.235 kb on - strand, within CCNA_01399 at 1519.264 kb on + strand, within CCNA_01399 at 1519.272 kb on - strand, within CCNA_01399 at 1519.321 kb on - strand, within CCNA_01399 at 1519.326 kb on - strand, within CCNA_01399 at 1519.326 kb on - strand, within CCNA_01399 at 1519.345 kb on + strand, within CCNA_01399 at 1519.361 kb on + strand, within CCNA_01399 at 1519.366 kb on + strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.379 kb on - strand, within CCNA_01399 at 1519.409 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.516 kb on - strand, within CCNA_01399 at 1519.599 kb on - strand, within CCNA_01399 at 1519.606 kb on - strand, within CCNA_01399 at 1519.618 kb on + strand, within CCNA_01399 at 1519.626 kb on - strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.654 kb on + strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.662 kb on - strand, within CCNA_01399 at 1519.705 kb on + strand, within CCNA_01399 at 1519.712 kb on + strand, within CCNA_01399 at 1519.720 kb on - strand, within CCNA_01399 at 1519.751 kb on + strand, within CCNA_01399 at 1519.751 kb on + strand, within CCNA_01399 at 1519.759 kb on - strand, within CCNA_01399 at 1519.759 kb on - strand, within CCNA_01399 at 1519.792 kb on + strand, within CCNA_01399 at 1519.795 kb on - strand, within CCNA_01399 at 1519.800 kb on - strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.802 kb on + strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.810 kb on - strand, within CCNA_01399 at 1519.837 kb on - strand, within CCNA_01399 at 1519.851 kb on - strand, within CCNA_01399 at 1519.858 kb on - strand, within CCNA_01399 at 1520.034 kb on + strand at 1520.112 kb on + strand at 1520.120 kb on - strand at 1520.228 kb on - strand, within CCNA_01400 at 1520.253 kb on + strand, within CCNA_01400 at 1520.344 kb on + strand, within CCNA_01400 at 1520.425 kb on + strand at 1520.425 kb on - strand at 1520.445 kb on - strand at 1520.461 kb on + strand at 1520.482 kb on + strand at 1520.482 kb on + strand at 1520.490 kb on - strand at 1520.554 kb on - strand at 1520.735 kb on + strand at 1520.743 kb on - strand at 1520.794 kb on + strand at 1520.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 1,519,124 + CCNA_01399 0.37 +0.1 1,519,124 + CCNA_01399 0.37 -0.6 1,519,124 + CCNA_01399 0.37 +0.5 1,519,124 + CCNA_01399 0.37 +0.7 1,519,196 + CCNA_01399 0.42 -2.9 1,519,201 + CCNA_01399 0.42 -2.0 1,519,204 - CCNA_01399 0.42 +0.3 1,519,209 - CCNA_01399 0.43 +0.8 1,519,209 - CCNA_01399 0.43 +1.3 1,519,227 + CCNA_01399 0.44 -1.4 1,519,227 + CCNA_01399 0.44 -1.3 1,519,235 - CCNA_01399 0.44 -0.7 1,519,264 + CCNA_01399 0.46 -1.5 1,519,272 - CCNA_01399 0.47 -0.2 1,519,321 - CCNA_01399 0.50 +0.7 1,519,326 - CCNA_01399 0.50 +0.7 1,519,326 - CCNA_01399 0.50 +1.1 1,519,345 + CCNA_01399 0.51 -2.1 1,519,361 + CCNA_01399 0.53 -1.9 1,519,366 + CCNA_01399 0.53 -0.4 1,519,369 - CCNA_01399 0.53 -0.8 1,519,369 - CCNA_01399 0.53 +2.6 1,519,369 - CCNA_01399 0.53 -0.4 1,519,379 - CCNA_01399 0.54 +0.7 1,519,409 - CCNA_01399 0.56 +0.3 1,519,434 - CCNA_01399 0.57 +0.7 1,519,434 - CCNA_01399 0.57 +1.0 1,519,516 - CCNA_01399 0.63 +0.5 1,519,599 - CCNA_01399 0.68 +0.4 1,519,606 - CCNA_01399 0.68 -0.3 1,519,618 + CCNA_01399 0.69 -1.2 1,519,626 - CCNA_01399 0.70 -1.8 1,519,654 + CCNA_01399 0.72 -0.2 1,519,654 + CCNA_01399 0.72 -0.1 1,519,654 + CCNA_01399 0.72 +0.7 1,519,662 - CCNA_01399 0.72 -0.5 1,519,662 - CCNA_01399 0.72 +0.9 1,519,662 - CCNA_01399 0.72 -0.3 1,519,705 + CCNA_01399 0.75 +0.3 1,519,712 + CCNA_01399 0.75 +0.9 1,519,720 - CCNA_01399 0.76 +0.1 1,519,751 + CCNA_01399 0.78 +1.1 1,519,751 + CCNA_01399 0.78 +0.3 1,519,759 - CCNA_01399 0.78 +1.2 1,519,759 - CCNA_01399 0.78 +0.4 1,519,792 + CCNA_01399 0.81 -0.6 1,519,795 - CCNA_01399 0.81 -0.3 1,519,800 - CCNA_01399 0.81 +0.5 1,519,802 + CCNA_01399 0.81 -0.3 1,519,802 + CCNA_01399 0.81 -0.1 1,519,802 + CCNA_01399 0.81 -0.6 1,519,802 + CCNA_01399 0.81 -0.8 1,519,802 + CCNA_01399 0.81 +0.8 1,519,802 + CCNA_01399 0.81 -0.1 1,519,802 + CCNA_01399 0.81 -0.6 1,519,802 + CCNA_01399 0.81 -0.9 1,519,802 + CCNA_01399 0.81 -0.5 1,519,802 + CCNA_01399 0.81 -0.1 1,519,802 + CCNA_01399 0.81 -0.1 1,519,802 + CCNA_01399 0.81 -0.2 1,519,802 + CCNA_01399 0.81 -0.4 1,519,802 + CCNA_01399 0.81 +0.4 1,519,810 - CCNA_01399 0.82 -0.1 1,519,810 - CCNA_01399 0.82 +0.2 1,519,810 - CCNA_01399 0.82 -2.8 1,519,810 - CCNA_01399 0.82 -0.9 1,519,810 - CCNA_01399 0.82 +0.4 1,519,810 - CCNA_01399 0.82 +2.3 1,519,810 - CCNA_01399 0.82 +1.1 1,519,810 - CCNA_01399 0.82 +0.6 1,519,837 - CCNA_01399 0.84 +0.6 1,519,851 - CCNA_01399 0.84 +0.8 1,519,858 - CCNA_01399 0.85 +1.2 1,520,034 + -0.2 1,520,112 + -0.1 1,520,120 - +0.2 1,520,228 - CCNA_01400 0.33 +0.7 1,520,253 + CCNA_01400 0.41 -0.4 1,520,344 + CCNA_01400 0.68 -1.7 1,520,425 + +0.9 1,520,425 - -0.4 1,520,445 - -0.3 1,520,461 + -0.4 1,520,482 + -0.1 1,520,482 + +0.1 1,520,490 - -0.1 1,520,554 - -0.9 1,520,735 + +0.3 1,520,743 - -0.0 1,520,794 + +0.8 1,520,919 + +1.1
Or see this region's nucleotide sequence