Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01379 and CCNA_01380 are separated by 128 nucleotides CCNA_01380 and CCNA_01381 are separated by 126 nucleotides CCNA_01381 and CCNA_01382 are separated by 294 nucleotides
CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683
_01379
CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345
_01380
CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192
_01381
CCNA_01382: CCNA_01382 - long-chain-fatty-acid--CoA ligase, at 1,498,487 to 1,500,238
_01382
Position (kb)
1495
1496
1497
1498
1499 Strain fitness (log2 ratio)
-2
-1
0
1 at 1494.528 kb on - strand, within CCNA_01379 at 1494.699 kb on + strand at 1494.717 kb on - strand at 1494.765 kb on + strand at 1495.348 kb on + strand at 1495.410 kb on - strand at 1498.253 kb on - strand at 1498.291 kb on - strand at 1498.361 kb on - strand at 1498.363 kb on + strand at 1498.371 kb on - strand at 1498.431 kb on - strand at 1498.527 kb on + strand at 1498.542 kb on + strand at 1498.547 kb on + strand at 1498.550 kb on - strand at 1498.561 kb on + strand at 1498.561 kb on + strand at 1498.569 kb on - strand at 1498.569 kb on - strand at 1498.569 kb on - strand at 1498.578 kb on + strand at 1498.578 kb on + strand at 1498.609 kb on + strand at 1498.642 kb on + strand at 1498.642 kb on + strand at 1498.708 kb on + strand, within CCNA_01382 at 1498.708 kb on + strand, within CCNA_01382 at 1498.731 kb on - strand, within CCNA_01382 at 1498.744 kb on - strand, within CCNA_01382 at 1498.772 kb on + strand, within CCNA_01382 at 1498.819 kb on - strand, within CCNA_01382 at 1498.852 kb on - strand, within CCNA_01382 at 1498.862 kb on - strand, within CCNA_01382 at 1498.960 kb on + strand, within CCNA_01382 at 1498.976 kb on + strand, within CCNA_01382 at 1498.993 kb on + strand, within CCNA_01382 at 1498.994 kb on - strand, within CCNA_01382 at 1499.080 kb on + strand, within CCNA_01382 at 1499.088 kb on - strand, within CCNA_01382 at 1499.157 kb on - strand, within CCNA_01382 at 1499.157 kb on - strand, within CCNA_01382
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 1,494,528 - CCNA_01379 0.89 -0.8 1,494,699 + +0.7 1,494,717 - -0.2 1,494,765 + -1.0 1,495,348 + +1.2 1,495,410 - -0.7 1,498,253 - +0.7 1,498,291 - -0.7 1,498,361 - +0.4 1,498,363 + -1.0 1,498,371 - -0.6 1,498,431 - +0.2 1,498,527 + +1.1 1,498,542 + +1.1 1,498,547 + -0.2 1,498,550 - -0.3 1,498,561 + -0.2 1,498,561 + -1.1 1,498,569 - -0.2 1,498,569 - +0.0 1,498,569 - +0.0 1,498,578 + +0.9 1,498,578 + -0.1 1,498,609 + +1.4 1,498,642 + +0.2 1,498,642 + -0.2 1,498,708 + CCNA_01382 0.13 +0.6 1,498,708 + CCNA_01382 0.13 +0.2 1,498,731 - CCNA_01382 0.14 +0.0 1,498,744 - CCNA_01382 0.15 +0.7 1,498,772 + CCNA_01382 0.16 +0.4 1,498,819 - CCNA_01382 0.19 -0.8 1,498,852 - CCNA_01382 0.21 +0.1 1,498,862 - CCNA_01382 0.21 -2.0 1,498,960 + CCNA_01382 0.27 +0.4 1,498,976 + CCNA_01382 0.28 -0.6 1,498,993 + CCNA_01382 0.29 +0.8 1,498,994 - CCNA_01382 0.29 +0.8 1,499,080 + CCNA_01382 0.34 +0.4 1,499,088 - CCNA_01382 0.34 +0.4 1,499,157 - CCNA_01382 0.38 -0.7 1,499,157 - CCNA_01382 0.38 -0.8
Or see this region's nucleotide sequence