Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01109

Experiment: PYE with CHIR-090 40 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 40 ug/mL
1,213,007	-		CCNA_01108	0.41	-0.4
1,213,028	-		CCNA_01108	0.44	-0.3
1,213,040	+		CCNA_01108	0.45	+0.7
1,213,042	-		CCNA_01108	0.45	+1.3
1,213,058	+		CCNA_01108	0.47	+0.2
1,213,074	+		CCNA_01108	0.49	-0.7
1,213,074	+		CCNA_01108	0.49	-0.8
1,213,079	+		CCNA_01108	0.50	-1.0
1,213,087	-		CCNA_01108	0.51	+0.4
1,213,087	-		CCNA_01108	0.51	+0.4
1,213,087	-		CCNA_01108	0.51	-0.6
1,213,090	+		CCNA_01108	0.51	-1.1
1,213,117	+		CCNA_01108	0.54	-1.2
1,213,150	+		CCNA_01108	0.58	-0.5
1,213,158	-		CCNA_01108	0.59	+0.2
1,213,158	-		CCNA_01108	0.59	-0.0
1,213,222	-		CCNA_01108	0.66	+0.6
1,213,234	+		CCNA_01108	0.68	+0.5
1,213,234	+		CCNA_01108	0.68	+1.0
1,213,234	+		CCNA_01108	0.68	-1.7
1,213,234	+		CCNA_01108	0.68	-0.5
1,213,239	+		CCNA_01108	0.68	+0.3
1,213,240	+		CCNA_01108	0.68	-1.4
1,213,242	-		CCNA_01108	0.69	+0.5
1,213,242	-		CCNA_01108	0.69	+0.8
1,213,242	-		CCNA_01108	0.69	+0.8
1,213,242	-		CCNA_01108	0.69	-0.2
1,213,242	-		CCNA_01108	0.69	+0.3
1,213,247	-		CCNA_01108	0.69	+0.6
1,213,248	-		CCNA_01108	0.69	-1.8
1,213,248	-		CCNA_01108	0.69	+3.2
1,213,248	-		CCNA_01108	0.69	+0.5
1,213,248	-		CCNA_01108	0.69	+0.6
1,213,248	-		CCNA_01108	0.69	+0.3
1,213,248	-		CCNA_01108	0.69	+0.4
1,213,256	+		CCNA_01108	0.70	+0.2
1,213,287	+		CCNA_01108	0.74	+0.6
1,213,298	-		CCNA_01108	0.75	-0.6
1,213,309	+		CCNA_01108	0.76	-1.5
1,213,309	+		CCNA_01108	0.76	-1.4
1,213,311	+		CCNA_01108	0.77	-1.0
1,213,399	+		CCNA_01108	0.87	-1.3
1,213,399	+		CCNA_01108	0.87	-0.1
1,213,399	+		CCNA_01108	0.87	-1.2
1,213,404	+		CCNA_01108	0.87	+1.5
1,213,404	+		CCNA_01108	0.87	-0.3
1,213,407	-		CCNA_01108	0.88	+0.1
1,213,409	+		CCNA_01108	0.88	-0.4
1,213,409	+		CCNA_01108	0.88	+0.2
1,213,412	-		CCNA_01108	0.88	-0.1
1,213,417	-		CCNA_01108	0.89	+0.3
1,213,422	-		CCNA_01108	0.90	+0.2
1,213,449	+				+0.1
1,213,457	-				-0.4
1,213,473	+				-0.6
1,213,480	+				+1.4
1,213,485	+				+0.4
1,213,488	-				-0.6
1,213,493	-				+0.6
1,213,493	-				-0.1
1,213,493	-				+0.2
1,213,493	-				+0.5
1,213,514	-				+0.3
1,213,527	-				-0.4
1,213,541	+				-0.1
1,213,541	+				+1.9
1,213,541	+				+0.4
1,213,549	-				-0.5
1,213,549	-				+0.1
1,213,567	+				-1.2
1,213,567	+				-0.9
1,213,575	-				+0.3
1,213,584	+				-0.4
1,213,686	+				+0.3
1,213,785	-				+0.5
1,213,818	-		CCNA_R0027	0.13	-1.0
1,213,922	+				+0.2
1,213,959	+				+0.1
1,213,959	+				-0.6
1,213,967	-				+1.0
1,213,989	+				+0.3
1,213,997	-				-0.9
1,213,997	-				+0.2
1,214,081	+				+0.5
1,214,205	+		CCNA_01109	0.13	-0.1
1,214,205	+		CCNA_01109	0.13	-0.1
1,214,213	-		CCNA_01109	0.13	-1.1
1,214,213	-		CCNA_01109	0.13	-0.3
1,214,234	-		CCNA_01109	0.14	-0.6
1,214,234	-		CCNA_01109	0.14	-0.4
1,214,281	+		CCNA_01109	0.17	-2.2
1,214,281	+		CCNA_01109	0.17	+0.3
1,214,289	-		CCNA_01109	0.17	-1.2
1,214,289	-		CCNA_01109	0.17	-1.2
1,214,294	-		CCNA_01109	0.17	+0.9
1,214,294	-		CCNA_01109	0.17	-0.3
1,214,296	+		CCNA_01109	0.18	+0.7
1,214,296	+		CCNA_01109	0.18	-0.8
1,214,297	-		CCNA_01109	0.18	-0.5
1,214,341	+		CCNA_01109	0.20	+0.2
1,214,349	-		CCNA_01109	0.21	-1.3
1,214,374	+		CCNA_01109	0.22	+0.3
1,214,382	-		CCNA_01109	0.22	-1.7
1,214,400	+		CCNA_01109	0.23	-0.4
1,214,408	-		CCNA_01109	0.24	-0.1
1,214,408	-		CCNA_01109	0.24	-1.4
1,214,408	-		CCNA_01109	0.24	-2.1
1,214,432	-		CCNA_01109	0.25	-0.3
1,214,447	-		CCNA_01109	0.26	-0.2
1,214,447	-		CCNA_01109	0.26	-0.4
1,214,447	-		CCNA_01109	0.26	-0.2
1,214,447	-		CCNA_01109	0.26	-1.4
1,214,447	-		CCNA_01109	0.26	+1.2
1,214,478	-		CCNA_01109	0.28	+0.1
1,214,503	+		CCNA_01109	0.29	-0.0
1,214,511	-		CCNA_01109	0.30	-0.8
1,214,544	-		CCNA_01109	0.31	-1.4
1,214,544	-		CCNA_01109	0.31	+0.7
1,214,623	+		CCNA_01109	0.36	-0.2
1,214,630	-		CCNA_01109	0.36	-0.4
1,214,636	+		CCNA_01109	0.37	+0.8
1,214,649	-		CCNA_01109	0.37	+0.4
1,214,649	-		CCNA_01109	0.37	+0.0
1,214,649	-		CCNA_01109	0.37	-0.2
1,214,663	-		CCNA_01109	0.38	-0.3
1,214,676	-		CCNA_01109	0.39	-1.0
1,214,738	+		CCNA_01109	0.42	-0.3
1,214,740	+		CCNA_01109	0.42	+1.3
1,214,740	+		CCNA_01109	0.42	+0.4
1,214,740	+		CCNA_01109	0.42	+0.3
1,214,764	-		CCNA_01109	0.44	-0.3
1,214,820	+		CCNA_01109	0.47	+0.7
1,214,851	-		CCNA_01109	0.49	+1.7
1,214,881	+		CCNA_01109	0.50	-0.0
1,214,900	-		CCNA_01109	0.51	-0.1
1,214,993	+		CCNA_01109	0.57	+0.7
1,215,060	+		CCNA_01109	0.60	+0.0
1,215,060	+		CCNA_01109	0.60	+0.4
1,215,060	+		CCNA_01109	0.60	+1.4
1,215,060	+		CCNA_01109	0.60	-0.2
1,215,060	+		CCNA_01109	0.60	-2.0
1,215,068	-		CCNA_01109	0.61	+0.4
1,215,068	-		CCNA_01109	0.61	-0.6
1,215,068	-		CCNA_01109	0.61	-0.2
1,215,068	-		CCNA_01109	0.61	-1.9
1,215,068	-		CCNA_01109	0.61	+0.7
1,215,068	-		CCNA_01109	0.61	-0.4
1,215,079	+		CCNA_01109	0.61	-0.2
1,215,092	-		CCNA_01109	0.62	-0.1
1,215,110	-		CCNA_01109	0.63	-2.4
1,215,140	-		CCNA_01109	0.65	+0.3
1,215,146	-		CCNA_01109	0.65	+1.5
1,215,160	+		CCNA_01109	0.66	+0.8
1,215,162	+		CCNA_01109	0.66	-0.3
1,215,184	-		CCNA_01109	0.67	+0.0
1,215,219	+		CCNA_01109	0.69	+0.3
1,215,227	-		CCNA_01109	0.70	-0.5
1,215,227	-		CCNA_01109	0.70	-0.6
1,215,239	+		CCNA_01109	0.70	+0.6
1,215,239	+		CCNA_01109	0.70	-0.8
1,215,239	+		CCNA_01109	0.70	-0.6
1,215,239	+		CCNA_01109	0.70	+0.0
1,215,243	+		CCNA_01109	0.70	+0.8
1,215,247	-		CCNA_01109	0.71	+1.9
1,215,270	+		CCNA_01109	0.72	+0.0
1,215,321	+		CCNA_01109	0.75	-0.9
1,215,329	-		CCNA_01109	0.75	-0.7
1,215,329	-		CCNA_01109	0.75	-1.0
1,215,330	-		CCNA_01109	0.75	-0.1
1,215,330	-		CCNA_01109	0.75	-1.6
1,215,344	+		CCNA_01109	0.76	+0.4
1,215,377	+		CCNA_01109	0.78	-0.7
1,215,385	-		CCNA_01109	0.78	-1.7
1,215,385	-		CCNA_01109	0.78	+0.5
1,215,385	-		CCNA_01109	0.78	+0.1
1,215,385	-		CCNA_01109	0.78	-2.5
1,215,442	+		CCNA_01109	0.82	-0.0
1,215,447	+		CCNA_01109	0.82	+0.7
1,215,465	-		CCNA_01109	0.83	-0.2
1,215,465	-		CCNA_01109	0.83	+0.0
1,215,477	-		CCNA_01109	0.84	-1.5
1,215,496	-		CCNA_01109	0.85	+1.3
1,215,497	+		CCNA_01109	0.85	-0.7
1,215,546	+		CCNA_01109	0.87	+0.8
1,215,557	+		CCNA_01109	0.88	+0.5
1,215,593	+				+1.1
1,215,635	+				-0.3
1,215,643	-				-0.6
1,215,672	+				+0.3
1,215,732	-				-1.0
1,215,735	+				+0.6
1,215,738	-				+0.5
1,215,743	-				-1.9
1,215,765	+				+0.5
1,215,780	-				-1.1
1,215,782	+				+0.5
1,215,782	+				+0.2
1,215,782	+				+1.2
1,215,792	-				+1.2
1,215,797	-				-1.0
1,215,800	+				+0.4
1,215,800	+				+0.1
1,215,874	+		CCNA_01110	0.11	-0.6
1,215,895	-		CCNA_01110	0.13	-0.3
1,215,928	-		CCNA_01110	0.17	+0.5
1,215,940	+		CCNA_01110	0.18	+0.2
1,215,943	-		CCNA_01110	0.18	+0.2
1,215,963	-		CCNA_01110	0.20	-0.1
1,215,987	+		CCNA_01110	0.23	-0.5
1,216,035	+		CCNA_01110	0.28	+0.3
1,216,060	-		CCNA_01110	0.31	+0.5
1,216,112	+		CCNA_01110	0.36	+0.7
1,216,120	-		CCNA_01110	0.37	-0.3
1,216,194	-		CCNA_01110	0.45	-0.5
1,216,293	+		CCNA_01110	0.56	+0.5
1,216,301	-		CCNA_01110	0.57	+0.4
1,216,303	+		CCNA_01110	0.57	+0.2
1,216,328	+		CCNA_01110	0.60	+0.9
1,216,346	-		CCNA_01110	0.62	-1.8
1,216,346	-		CCNA_01110	0.62	+0.1
1,216,356	+		CCNA_01110	0.63	+0.9
1,216,386	+		CCNA_01110	0.66	+0.2
1,216,401	+		CCNA_01110	0.68	-0.1
1,216,401	+		CCNA_01110	0.68	+0.5
1,216,409	-		CCNA_01110	0.69	-0.9
1,216,409	-		CCNA_01110	0.69	-0.4
1,216,409	-		CCNA_01110	0.69	+0.2
1,216,454	+		CCNA_01110	0.73	+0.1
1,216,473	+		CCNA_01110	0.75	-0.3
1,216,493	-		CCNA_01110	0.78	+0.2
1,216,498	-		CCNA_01110	0.78	+0.3
1,216,520	+		CCNA_01110	0.80	+0.7
1,216,520	+		CCNA_01110	0.80	+0.5
1,216,528	-		CCNA_01110	0.81	+0.1
1,216,528	-		CCNA_01110	0.81	-1.1
1,216,528	-		CCNA_01110	0.81	-0.3
1,216,528	-		CCNA_01110	0.81	+0.7
1,216,528	-		CCNA_01110	0.81	+0.0
1,216,599	+		CCNA_01110	0.89	+1.8
1,216,609	-				-0.5
1,216,681	+				+0.7
1,216,681	+				+1.0
1,216,688	-				-0.3
1,216,688	-				-0.2
1,216,689	+				-0.2
1,216,689	+				+0.8
1,216,689	+				+0.2
1,216,690	+				-1.4
1,216,697	-				+0.5
1,216,697	-				-0.3
1,216,697	-				-1.2
1,216,697	-				+0.3
1,216,697	-				+0.2
1,216,705	+				+0.4