Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00841

Experiment: PYE with CHIR-090 40 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00840 and CCNA_00841 are separated by 9 nucleotidesCCNA_00841 and CCNA_00842 are separated by 89 nucleotides CCNA_00840: CCNA_00840 - sialic acid-specific 9-O-acetylesterase, at 909,868 to 911,793 _00840 CCNA_00841: CCNA_00841 - carboxylesterase type B, at 911,803 to 913,419 _00841 CCNA_00842: CCNA_00842 - hypothetical protein, at 913,509 to 915,233 _00842 Position (kb) 911 912 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 910.842 kb on + strand, within CCNA_00840at 910.862 kb on - strand, within CCNA_00840at 910.867 kb on + strand, within CCNA_00840at 910.915 kb on + strand, within CCNA_00840at 910.915 kb on + strand, within CCNA_00840at 910.923 kb on - strand, within CCNA_00840at 910.923 kb on - strand, within CCNA_00840at 910.923 kb on - strand, within CCNA_00840at 910.924 kb on - strand, within CCNA_00840at 910.972 kb on + strand, within CCNA_00840at 910.987 kb on + strand, within CCNA_00840at 911.096 kb on - strand, within CCNA_00840at 911.106 kb on - strand, within CCNA_00840at 911.108 kb on - strand, within CCNA_00840at 911.148 kb on + strand, within CCNA_00840at 911.155 kb on + strand, within CCNA_00840at 911.155 kb on + strand, within CCNA_00840at 911.173 kb on + strand, within CCNA_00840at 911.194 kb on + strand, within CCNA_00840at 911.194 kb on + strand, within CCNA_00840at 911.194 kb on + strand, within CCNA_00840at 911.199 kb on + strand, within CCNA_00840at 911.338 kb on - strand, within CCNA_00840at 911.343 kb on - strand, within CCNA_00840at 911.365 kb on - strand, within CCNA_00840at 911.380 kb on - strand, within CCNA_00840at 911.380 kb on - strand, within CCNA_00840at 911.429 kb on - strand, within CCNA_00840at 911.481 kb on + strand, within CCNA_00840at 911.503 kb on + strand, within CCNA_00840at 911.521 kb on - strand, within CCNA_00840at 911.539 kb on + strand, within CCNA_00840at 911.598 kb on + strand, within CCNA_00840at 911.603 kb on + strandat 911.611 kb on - strandat 911.671 kb on - strandat 911.676 kb on - strandat 911.688 kb on - strandat 911.742 kb on + strandat 911.750 kb on - strandat 911.771 kb on + strandat 911.795 kb on - strandat 911.831 kb on + strandat 911.885 kb on + strandat 911.887 kb on + strandat 911.911 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.916 kb on + strandat 911.918 kb on + strandat 911.918 kb on + strandat 911.918 kb on + strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.924 kb on - strandat 911.925 kb on + strandat 911.925 kb on - strandat 911.926 kb on - strandat 911.926 kb on - strandat 911.926 kb on - strandat 911.926 kb on - strandat 911.932 kb on + strandat 911.996 kb on + strand, within CCNA_00841at 911.996 kb on + strand, within CCNA_00841at 911.996 kb on + strand, within CCNA_00841at 912.004 kb on - strand, within CCNA_00841at 912.004 kb on - strand, within CCNA_00841at 912.016 kb on + strand, within CCNA_00841at 912.016 kb on + strand, within CCNA_00841at 912.016 kb on + strand, within CCNA_00841at 912.022 kb on - strand, within CCNA_00841at 912.024 kb on - strand, within CCNA_00841at 912.024 kb on - strand, within CCNA_00841at 912.024 kb on - strand, within CCNA_00841at 912.049 kb on - strand, within CCNA_00841at 912.064 kb on + strand, within CCNA_00841at 912.072 kb on - strand, within CCNA_00841at 912.100 kb on - strand, within CCNA_00841at 912.139 kb on + strand, within CCNA_00841at 912.166 kb on - strand, within CCNA_00841at 912.166 kb on - strand, within CCNA_00841at 912.256 kb on + strand, within CCNA_00841at 912.256 kb on + strand, within CCNA_00841at 912.276 kb on + strand, within CCNA_00841at 912.279 kb on - strand, within CCNA_00841at 912.279 kb on - strand, within CCNA_00841at 912.279 kb on - strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.346 kb on + strand, within CCNA_00841at 912.349 kb on - strand, within CCNA_00841at 912.385 kb on - strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.430 kb on + strand, within CCNA_00841at 912.438 kb on - strand, within CCNA_00841at 912.438 kb on - strand, within CCNA_00841at 912.438 kb on - strand, within CCNA_00841at 912.438 kb on - strand, within CCNA_00841at 912.457 kb on - strand, within CCNA_00841at 912.463 kb on + strand, within CCNA_00841at 912.471 kb on - strand, within CCNA_00841at 912.481 kb on + strand, within CCNA_00841at 912.494 kb on - strand, within CCNA_00841at 912.541 kb on - strand, within CCNA_00841at 912.543 kb on - strand, within CCNA_00841at 912.614 kb on + strand, within CCNA_00841at 912.622 kb on - strand, within CCNA_00841at 912.622 kb on - strand, within CCNA_00841at 912.623 kb on - strand, within CCNA_00841at 912.693 kb on + strand, within CCNA_00841at 912.714 kb on - strand, within CCNA_00841at 912.827 kb on + strand, within CCNA_00841at 912.857 kb on + strand, within CCNA_00841at 912.916 kb on + strand, within CCNA_00841at 912.924 kb on - strand, within CCNA_00841at 912.957 kb on + strand, within CCNA_00841at 913.070 kb on + strand, within CCNA_00841at 913.082 kb on + strand, within CCNA_00841at 913.089 kb on - strand, within CCNA_00841at 913.107 kb on + strand, within CCNA_00841at 913.116 kb on + strand, within CCNA_00841at 913.125 kb on - strand, within CCNA_00841at 913.183 kb on - strand, within CCNA_00841at 913.183 kb on - strand, within CCNA_00841at 913.195 kb on - strand, within CCNA_00841at 913.199 kb on + strand, within CCNA_00841at 913.256 kb on + strand, within CCNA_00841at 913.354 kb on + strandat 913.521 kb on + strandat 913.560 kb on - strandat 913.591 kb on + strandat 913.707 kb on + strand, within CCNA_00842at 913.707 kb on + strand, within CCNA_00842at 913.723 kb on - strand, within CCNA_00842at 913.730 kb on - strand, within CCNA_00842at 913.775 kb on + strand, within CCNA_00842at 913.783 kb on - strand, within CCNA_00842at 913.783 kb on - strand, within CCNA_00842at 913.808 kb on - strand, within CCNA_00842at 913.830 kb on + strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.838 kb on - strand, within CCNA_00842at 913.881 kb on + strand, within CCNA_00842at 913.936 kb on + strand, within CCNA_00842at 913.970 kb on - strand, within CCNA_00842at 914.000 kb on + strand, within CCNA_00842at 914.003 kb on - strand, within CCNA_00842at 914.008 kb on - strand, within CCNA_00842at 914.008 kb on - strand, within CCNA_00842at 914.008 kb on - strand, within CCNA_00842at 914.013 kb on - strand, within CCNA_00842at 914.024 kb on - strand, within CCNA_00842at 914.027 kb on - strand, within CCNA_00842at 914.068 kb on + strand, within CCNA_00842at 914.068 kb on + strand, within CCNA_00842at 914.076 kb on - strand, within CCNA_00842at 914.076 kb on - strand, within CCNA_00842at 914.090 kb on + strand, within CCNA_00842at 914.095 kb on + strand, within CCNA_00842at 914.098 kb on - strand, within CCNA_00842at 914.098 kb on - strand, within CCNA_00842at 914.197 kb on + strand, within CCNA_00842at 914.199 kb on - strand, within CCNA_00842at 914.219 kb on + strand, within CCNA_00842at 914.249 kb on + strand, within CCNA_00842at 914.249 kb on + strand, within CCNA_00842at 914.249 kb on + strand, within CCNA_00842at 914.249 kb on + strand, within CCNA_00842at 914.257 kb on - strand, within CCNA_00842at 914.258 kb on + strand, within CCNA_00842at 914.356 kb on + strand, within CCNA_00842at 914.369 kb on - strand, within CCNA_00842

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
remove
910,842 + CCNA_00840 0.51 +1.0
910,862 - CCNA_00840 0.52 +0.1
910,867 + CCNA_00840 0.52 +0.1
910,915 + CCNA_00840 0.54 -0.6
910,915 + CCNA_00840 0.54 +0.5
910,923 - CCNA_00840 0.55 -0.4
910,923 - CCNA_00840 0.55 +0.4
910,923 - CCNA_00840 0.55 -0.9
910,924 - CCNA_00840 0.55 -0.7
910,972 + CCNA_00840 0.57 +0.0
910,987 + CCNA_00840 0.58 +0.9
911,096 - CCNA_00840 0.64 +0.6
911,106 - CCNA_00840 0.64 +0.7
911,108 - CCNA_00840 0.64 -0.6
911,148 + CCNA_00840 0.66 +1.9
911,155 + CCNA_00840 0.67 +0.5
911,155 + CCNA_00840 0.67 -0.2
911,173 + CCNA_00840 0.68 +0.5
911,194 + CCNA_00840 0.69 -2.4
911,194 + CCNA_00840 0.69 -0.3
911,194 + CCNA_00840 0.69 -0.0
911,199 + CCNA_00840 0.69 -0.3
911,338 - CCNA_00840 0.76 -0.9
911,343 - CCNA_00840 0.77 +0.2
911,365 - CCNA_00840 0.78 -0.6
911,380 - CCNA_00840 0.79 +0.0
911,380 - CCNA_00840 0.79 +1.4
911,429 - CCNA_00840 0.81 -0.6
911,481 + CCNA_00840 0.84 +0.3
911,503 + CCNA_00840 0.85 +0.1
911,521 - CCNA_00840 0.86 +0.1
911,539 + CCNA_00840 0.87 +0.5
911,598 + CCNA_00840 0.90 -1.2
911,603 + +0.3
911,611 - +0.8
911,671 - +1.4
911,676 - +0.2
911,688 - -0.0
911,742 + -0.8
911,750 - -0.1
911,771 + +0.4
911,795 - +0.3
911,831 + -0.1
911,885 + +1.6
911,887 + -0.2
911,911 + -2.0
911,916 + +0.2
911,916 + -0.5
911,916 + -0.6
911,916 + -0.5
911,916 + -1.1
911,918 + +0.5
911,918 + +1.7
911,918 + +0.2
911,924 - -0.6
911,924 - -0.5
911,924 - +0.7
911,924 - -1.5
911,924 - -0.9
911,925 + +1.4
911,925 - -1.0
911,926 - +0.3
911,926 - -0.2
911,926 - +0.2
911,926 - +0.0
911,932 + +0.1
911,996 + CCNA_00841 0.12 -0.8
911,996 + CCNA_00841 0.12 -0.7
911,996 + CCNA_00841 0.12 +0.3
912,004 - CCNA_00841 0.12 +0.4
912,004 - CCNA_00841 0.12 +0.2
912,016 + CCNA_00841 0.13 +0.8
912,016 + CCNA_00841 0.13 +0.1
912,016 + CCNA_00841 0.13 +0.2
912,022 - CCNA_00841 0.14 +0.5
912,024 - CCNA_00841 0.14 -0.0
912,024 - CCNA_00841 0.14 +0.2
912,024 - CCNA_00841 0.14 -0.9
912,049 - CCNA_00841 0.15 +0.2
912,064 + CCNA_00841 0.16 -0.8
912,072 - CCNA_00841 0.17 -0.0
912,100 - CCNA_00841 0.18 +0.2
912,139 + CCNA_00841 0.21 -0.1
912,166 - CCNA_00841 0.22 -1.1
912,166 - CCNA_00841 0.22 -0.2
912,256 + CCNA_00841 0.28 -0.5
912,256 + CCNA_00841 0.28 -1.0
912,276 + CCNA_00841 0.29 -0.9
912,279 - CCNA_00841 0.29 +0.9
912,279 - CCNA_00841 0.29 +0.6
912,279 - CCNA_00841 0.29 -0.2
912,346 + CCNA_00841 0.34 +0.3
912,346 + CCNA_00841 0.34 -0.2
912,346 + CCNA_00841 0.34 -0.3
912,346 + CCNA_00841 0.34 +0.2
912,346 + CCNA_00841 0.34 -1.0
912,349 - CCNA_00841 0.34 -0.8
912,385 - CCNA_00841 0.36 -0.8
912,430 + CCNA_00841 0.39 -0.1
912,430 + CCNA_00841 0.39 -2.4
912,430 + CCNA_00841 0.39 +0.9
912,430 + CCNA_00841 0.39 +0.2
912,430 + CCNA_00841 0.39 -0.2
912,430 + CCNA_00841 0.39 -0.1
912,430 + CCNA_00841 0.39 +0.1
912,438 - CCNA_00841 0.39 -0.2
912,438 - CCNA_00841 0.39 -0.2
912,438 - CCNA_00841 0.39 +0.7
912,438 - CCNA_00841 0.39 -0.4
912,457 - CCNA_00841 0.40 -0.2
912,463 + CCNA_00841 0.41 -0.8
912,471 - CCNA_00841 0.41 -1.6
912,481 + CCNA_00841 0.42 -0.5
912,494 - CCNA_00841 0.43 -0.1
912,541 - CCNA_00841 0.46 -0.6
912,543 - CCNA_00841 0.46 +0.0
912,614 + CCNA_00841 0.50 -1.2
912,622 - CCNA_00841 0.51 +0.0
912,622 - CCNA_00841 0.51 +0.2
912,623 - CCNA_00841 0.51 -0.3
912,693 + CCNA_00841 0.55 -0.1
912,714 - CCNA_00841 0.56 -0.6
912,827 + CCNA_00841 0.63 +0.2
912,857 + CCNA_00841 0.65 +0.6
912,916 + CCNA_00841 0.69 -0.4
912,924 - CCNA_00841 0.69 -1.3
912,957 + CCNA_00841 0.71 -0.4
913,070 + CCNA_00841 0.78 -0.8
913,082 + CCNA_00841 0.79 +0.7
913,089 - CCNA_00841 0.80 -0.3
913,107 + CCNA_00841 0.81 -0.8
913,116 + CCNA_00841 0.81 +0.2
913,125 - CCNA_00841 0.82 +0.5
913,183 - CCNA_00841 0.85 +0.3
913,183 - CCNA_00841 0.85 -1.6
913,195 - CCNA_00841 0.86 +0.0
913,199 + CCNA_00841 0.86 -0.1
913,256 + CCNA_00841 0.90 +0.3
913,354 + -0.4
913,521 + -0.2
913,560 - +0.4
913,591 + -0.4
913,707 + CCNA_00842 0.11 +1.0
913,707 + CCNA_00842 0.11 +0.4
913,723 - CCNA_00842 0.12 -1.3
913,730 - CCNA_00842 0.13 +0.4
913,775 + CCNA_00842 0.15 -0.2
913,783 - CCNA_00842 0.16 -0.9
913,783 - CCNA_00842 0.16 +0.4
913,808 - CCNA_00842 0.17 +0.3
913,830 + CCNA_00842 0.19 +0.7
913,838 - CCNA_00842 0.19 +0.9
913,838 - CCNA_00842 0.19 -1.9
913,838 - CCNA_00842 0.19 -0.7
913,881 + CCNA_00842 0.22 -0.2
913,936 + CCNA_00842 0.25 +0.2
913,970 - CCNA_00842 0.27 +0.2
914,000 + CCNA_00842 0.28 -0.0
914,003 - CCNA_00842 0.29 +0.1
914,008 - CCNA_00842 0.29 +0.6
914,008 - CCNA_00842 0.29 +0.3
914,008 - CCNA_00842 0.29 -0.5
914,013 - CCNA_00842 0.29 +0.4
914,024 - CCNA_00842 0.30 +0.7
914,027 - CCNA_00842 0.30 -0.2
914,068 + CCNA_00842 0.32 -0.2
914,068 + CCNA_00842 0.32 -0.4
914,076 - CCNA_00842 0.33 -1.1
914,076 - CCNA_00842 0.33 +0.2
914,090 + CCNA_00842 0.34 -0.2
914,095 + CCNA_00842 0.34 +0.1
914,098 - CCNA_00842 0.34 -0.3
914,098 - CCNA_00842 0.34 -1.3
914,197 + CCNA_00842 0.40 +0.4
914,199 - CCNA_00842 0.40 -0.3
914,219 + CCNA_00842 0.41 +0.5
914,249 + CCNA_00842 0.43 -0.1
914,249 + CCNA_00842 0.43 -1.8
914,249 + CCNA_00842 0.43 -0.2
914,249 + CCNA_00842 0.43 -0.7
914,257 - CCNA_00842 0.43 -0.2
914,258 + CCNA_00842 0.43 -0.7
914,356 + CCNA_00842 0.49 +0.0
914,369 - CCNA_00842 0.50 +0.1

Or see this region's nucleotide sequence