Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00699

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00698 and CCNA_00699 are separated by 265 nucleotidesCCNA_00699 and CCNA_00700 are separated by 718 nucleotides CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815 _00698 CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380 _00699 CCNA_00700: CCNA_00700 - TonB-dependent receptor, at 759,099 to 761,024 _00700 Position (kb) 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 757.099 kb on - strandat 757.196 kb on + strandat 757.339 kb on - strandat 757.348 kb on - strandat 757.384 kb on - strand, within CCNA_00698at 757.384 kb on - strand, within CCNA_00698at 757.384 kb on - strand, within CCNA_00698at 757.395 kb on - strand, within CCNA_00698at 757.411 kb on - strand, within CCNA_00698at 757.436 kb on + strand, within CCNA_00698at 757.439 kb on + strand, within CCNA_00698at 757.447 kb on + strand, within CCNA_00698at 757.462 kb on - strand, within CCNA_00698at 757.476 kb on + strand, within CCNA_00698at 757.515 kb on - strand, within CCNA_00698at 757.516 kb on + strand, within CCNA_00698at 757.527 kb on + strand, within CCNA_00698at 757.544 kb on - strand, within CCNA_00698at 757.586 kb on + strand, within CCNA_00698at 757.589 kb on - strand, within CCNA_00698at 757.596 kb on + strand, within CCNA_00698at 757.596 kb on + strand, within CCNA_00698at 757.645 kb on + strand, within CCNA_00698at 757.645 kb on + strand, within CCNA_00698at 757.653 kb on - strand, within CCNA_00698at 757.724 kb on + strand, within CCNA_00698at 757.732 kb on - strand, within CCNA_00698at 757.738 kb on - strand, within CCNA_00698at 757.748 kb on - strand, within CCNA_00698at 757.754 kb on - strand, within CCNA_00698at 757.779 kb on + strandat 757.779 kb on - strandat 757.780 kb on + strandat 757.780 kb on + strandat 757.780 kb on + strandat 757.781 kb on - strandat 757.783 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.831 kb on - strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.856 kb on + strandat 757.922 kb on + strandat 757.929 kb on + strandat 757.934 kb on + strandat 757.939 kb on + strandat 757.947 kb on - strandat 757.947 kb on - strandat 758.353 kb on + strandat 758.375 kb on + strandat 758.495 kb on + strandat 758.495 kb on + strandat 758.503 kb on - strandat 758.526 kb on - strandat 758.533 kb on + strandat 758.541 kb on - strandat 758.541 kb on - strandat 758.572 kb on - strandat 759.065 kb on + strandat 759.067 kb on + strandat 759.075 kb on + strandat 759.077 kb on + strandat 759.077 kb on + strandat 759.077 kb on + strandat 759.085 kb on - strandat 759.085 kb on - strandat 759.112 kb on + strandat 759.112 kb on + strandat 759.112 kb on + strandat 759.197 kb on - strandat 759.213 kb on + strandat 759.213 kb on + strandat 759.218 kb on + strandat 759.226 kb on + strandat 759.226 kb on + strandat 759.283 kb on + strandat 759.289 kb on - strandat 759.292 kb on + strand, within CCNA_00700at 759.300 kb on - strand, within CCNA_00700at 759.300 kb on - strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.339 kb on + strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.347 kb on - strand, within CCNA_00700at 759.352 kb on + strand, within CCNA_00700at 759.360 kb on - strand, within CCNA_00700at 759.360 kb on - strand, within CCNA_00700

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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757,099 - -0.5
757,196 + -0.1
757,339 - -1.3
757,348 - +0.3
757,384 - CCNA_00698 0.13 -0.8
757,384 - CCNA_00698 0.13 -0.9
757,384 - CCNA_00698 0.13 -0.1
757,395 - CCNA_00698 0.15 -0.4
757,411 - CCNA_00698 0.19 +0.7
757,436 + CCNA_00698 0.24 +0.9
757,439 + CCNA_00698 0.24 +0.7
757,447 + CCNA_00698 0.26 -0.1
757,462 - CCNA_00698 0.29 +0.2
757,476 + CCNA_00698 0.32 -0.6
757,515 - CCNA_00698 0.40 -1.1
757,516 + CCNA_00698 0.40 -0.5
757,527 + CCNA_00698 0.42 -1.0
757,544 - CCNA_00698 0.45 -2.0
757,586 + CCNA_00698 0.54 +0.1
757,589 - CCNA_00698 0.54 -0.1
757,596 + CCNA_00698 0.56 +1.4
757,596 + CCNA_00698 0.56 -0.3
757,645 + CCNA_00698 0.66 +0.1
757,645 + CCNA_00698 0.66 -2.8
757,653 - CCNA_00698 0.67 +0.2
757,724 + CCNA_00698 0.82 -0.4
757,732 - CCNA_00698 0.83 +0.1
757,738 - CCNA_00698 0.84 +0.5
757,748 - CCNA_00698 0.86 +1.7
757,754 - CCNA_00698 0.88 -0.7
757,779 + -1.5
757,779 - -0.9
757,780 + -1.4
757,780 + +0.4
757,780 + -0.1
757,781 - -0.5
757,783 - -0.4
757,788 - -0.7
757,788 - -0.4
757,831 - -0.6
757,838 + +0.2
757,838 + +1.0
757,838 + +0.1
757,838 + -0.4
757,846 - +1.1
757,846 - +0.7
757,846 - +0.8
757,846 - -0.4
757,856 + -0.2
757,922 + -1.1
757,929 + -0.0
757,934 + +0.4
757,939 + +1.6
757,947 - -0.5
757,947 - -0.3
758,353 + +0.8
758,375 + +0.6
758,495 + +0.4
758,495 + +0.8
758,503 - +1.0
758,526 - -0.3
758,533 + +0.2
758,541 - +0.2
758,541 - +0.5
758,572 - -0.5
759,065 + +0.3
759,067 + +0.1
759,075 + -1.8
759,077 + -0.0
759,077 + -0.7
759,077 + +1.2
759,085 - +0.3
759,085 - -1.0
759,112 + +0.7
759,112 + +0.3
759,112 + +0.1
759,197 - +0.4
759,213 + +0.6
759,213 + +0.9
759,218 + -0.6
759,226 + +0.9
759,226 + +0.2
759,283 + +0.1
759,289 - +0.2
759,292 + CCNA_00700 0.10 +2.7
759,300 - CCNA_00700 0.10 -0.9
759,300 - CCNA_00700 0.10 +0.7
759,339 + CCNA_00700 0.12 -0.1
759,339 + CCNA_00700 0.12 +1.1
759,347 - CCNA_00700 0.13 +0.9
759,347 - CCNA_00700 0.13 -0.3
759,347 - CCNA_00700 0.13 -0.6
759,347 - CCNA_00700 0.13 +0.2
759,347 - CCNA_00700 0.13 -1.2
759,352 + CCNA_00700 0.13 +0.6
759,360 - CCNA_00700 0.14 +0.1
759,360 - CCNA_00700 0.14 +0.2

Or see this region's nucleotide sequence