Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03886 and CCNA_00582 are separated by 134 nucleotides CCNA_00582 and CCNA_00583 are separated by 80 nucleotides CCNA_00583 and CCNA_00585 are separated by 118 nucleotides
CCNA_03886: CCNA_03886 - trypsin-like peptidase domain family protein, at 609,287 to 611,065
_03886
CCNA_00582: CCNA_00582 - hypothetical protein, at 611,200 to 611,757
_00582
CCNA_00583: CCNA_00583 - lysozyme family protein, at 611,838 to 613,205
_00583
CCNA_00585: CCNA_00585 - hypothetical protein, at 613,324 to 614,379
_00585
Position (kb) 611
612
613
614 Strain fitness (log2 ratio) -2
-1
0
1
2 at 610.842 kb on + strand, within CCNA_03886 at 610.862 kb on - strand, within CCNA_03886 at 610.864 kb on + strand, within CCNA_03886 at 610.874 kb on + strand, within CCNA_03886 at 610.904 kb on + strand at 610.905 kb on + strand at 610.912 kb on - strand at 610.913 kb on - strand at 610.921 kb on - strand at 610.921 kb on - strand at 610.947 kb on + strand at 611.008 kb on + strand at 611.026 kb on - strand at 611.027 kb on + strand at 611.063 kb on - strand at 611.072 kb on + strand at 611.078 kb on + strand at 611.090 kb on + strand at 611.144 kb on + strand at 611.144 kb on + strand at 611.144 kb on + strand at 611.144 kb on + strand at 611.144 kb on + strand at 611.144 kb on + strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.152 kb on - strand at 611.154 kb on + strand at 611.178 kb on + strand at 611.214 kb on + strand at 611.214 kb on + strand at 611.234 kb on - strand at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.284 kb on + strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.292 kb on - strand, within CCNA_00582 at 611.311 kb on + strand, within CCNA_00582 at 611.388 kb on + strand, within CCNA_00582 at 611.413 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.457 kb on + strand, within CCNA_00582 at 611.465 kb on + strand, within CCNA_00582 at 611.465 kb on - strand, within CCNA_00582 at 611.470 kb on + strand, within CCNA_00582 at 611.478 kb on - strand, within CCNA_00582 at 611.483 kb on + strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.509 kb on - strand, within CCNA_00582 at 611.524 kb on + strand, within CCNA_00582 at 611.581 kb on + strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.589 kb on - strand, within CCNA_00582 at 611.612 kb on + strand, within CCNA_00582 at 611.621 kb on + strand, within CCNA_00582 at 611.624 kb on - strand, within CCNA_00582 at 611.650 kb on - strand, within CCNA_00582 at 611.705 kb on + strand at 611.760 kb on - strand at 611.760 kb on - strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.779 kb on + strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.787 kb on - strand at 611.789 kb on + strand at 611.789 kb on + strand at 611.820 kb on - strand at 611.825 kb on + strand at 611.835 kb on + strand at 611.883 kb on + strand at 611.903 kb on + strand at 611.911 kb on - strand at 611.973 kb on + strand at 611.973 kb on + strand at 611.979 kb on + strand, within CCNA_00583 at 612.011 kb on + strand, within CCNA_00583 at 612.030 kb on + strand, within CCNA_00583 at 612.044 kb on + strand, within CCNA_00583 at 612.057 kb on + strand, within CCNA_00583 at 612.073 kb on - strand, within CCNA_00583 at 612.091 kb on - strand, within CCNA_00583 at 612.113 kb on + strand, within CCNA_00583 at 612.147 kb on - strand, within CCNA_00583 at 612.147 kb on - strand, within CCNA_00583 at 612.159 kb on + strand, within CCNA_00583 at 612.161 kb on + strand, within CCNA_00583 at 612.178 kb on + strand, within CCNA_00583 at 612.203 kb on - strand, within CCNA_00583 at 612.203 kb on - strand, within CCNA_00583 at 612.212 kb on + strand, within CCNA_00583 at 612.222 kb on + strand, within CCNA_00583 at 612.222 kb on + strand, within CCNA_00583 at 612.283 kb on + strand, within CCNA_00583 at 612.330 kb on + strand, within CCNA_00583 at 612.362 kb on - strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.364 kb on + strand, within CCNA_00583 at 612.372 kb on - strand, within CCNA_00583 at 612.398 kb on + strand, within CCNA_00583 at 612.419 kb on - strand, within CCNA_00583 at 612.420 kb on - strand, within CCNA_00583 at 612.440 kb on - strand, within CCNA_00583 at 612.451 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.456 kb on + strand, within CCNA_00583 at 612.467 kb on + strand, within CCNA_00583 at 612.482 kb on + strand, within CCNA_00583 at 612.485 kb on - strand, within CCNA_00583 at 612.491 kb on - strand, within CCNA_00583 at 612.509 kb on + strand, within CCNA_00583 at 612.517 kb on - strand, within CCNA_00583 at 612.517 kb on - strand, within CCNA_00583 at 612.568 kb on - strand, within CCNA_00583 at 612.577 kb on - strand, within CCNA_00583 at 612.613 kb on + strand, within CCNA_00583 at 612.618 kb on + strand, within CCNA_00583 at 612.621 kb on - strand, within CCNA_00583 at 612.626 kb on - strand, within CCNA_00583 at 612.649 kb on + strand, within CCNA_00583 at 612.661 kb on + strand, within CCNA_00583 at 612.662 kb on + strand, within CCNA_00583 at 612.667 kb on + strand, within CCNA_00583 at 612.679 kb on + strand, within CCNA_00583 at 612.795 kb on + strand, within CCNA_00583 at 612.804 kb on + strand, within CCNA_00583 at 612.812 kb on - strand, within CCNA_00583 at 612.816 kb on - strand, within CCNA_00583 at 612.841 kb on + strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.849 kb on - strand, within CCNA_00583 at 612.863 kb on + strand, within CCNA_00583 at 612.912 kb on + strand, within CCNA_00583 at 612.916 kb on - strand, within CCNA_00583 at 613.032 kb on - strand, within CCNA_00583 at 613.038 kb on + strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.045 kb on + strand, within CCNA_00583 at 613.053 kb on - strand, within CCNA_00583 at 613.084 kb on + strand at 613.110 kb on - strand at 613.155 kb on - strand at 613.164 kb on + strand at 613.164 kb on - strand at 613.394 kb on + strand at 613.402 kb on - strand at 613.464 kb on + strand, within CCNA_00585 at 613.464 kb on + strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.472 kb on - strand, within CCNA_00585 at 613.478 kb on + strand, within CCNA_00585 at 613.482 kb on + strand, within CCNA_00585 at 613.496 kb on - strand, within CCNA_00585 at 613.497 kb on - strand, within CCNA_00585 at 613.506 kb on - strand, within CCNA_00585 at 613.511 kb on - strand, within CCNA_00585 at 613.575 kb on - strand, within CCNA_00585 at 613.577 kb on + strand, within CCNA_00585 at 613.580 kb on - strand, within CCNA_00585 at 613.598 kb on - strand, within CCNA_00585 at 613.614 kb on - strand, within CCNA_00585 at 613.653 kb on - strand, within CCNA_00585 at 613.687 kb on - strand, within CCNA_00585 at 613.744 kb on + strand, within CCNA_00585 at 613.777 kb on + strand, within CCNA_00585 at 613.782 kb on + strand, within CCNA_00585 at 613.788 kb on - strand, within CCNA_00585 at 613.790 kb on - strand, within CCNA_00585 at 613.872 kb on + strand, within CCNA_00585 at 613.872 kb on + strand, within CCNA_00585 at 613.882 kb on + strand, within CCNA_00585 at 613.908 kb on - strand, within CCNA_00585 at 613.911 kb on - strand, within CCNA_00585 at 613.914 kb on - strand, within CCNA_00585 at 613.928 kb on + strand, within CCNA_00585 at 613.979 kb on - strand, within CCNA_00585 at 614.000 kb on - strand, within CCNA_00585 at 614.038 kb on + strand, within CCNA_00585 at 614.041 kb on - strand, within CCNA_00585 at 614.046 kb on - strand, within CCNA_00585 at 614.054 kb on - strand, within CCNA_00585 at 614.077 kb on + strand, within CCNA_00585 at 614.079 kb on + strand, within CCNA_00585 at 614.086 kb on + strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.087 kb on - strand, within CCNA_00585 at 614.094 kb on - strand, within CCNA_00585 at 614.096 kb on + strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.137 kb on - strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.140 kb on + strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.148 kb on - strand, within CCNA_00585 at 614.158 kb on - strand, within CCNA_00585 at 614.168 kb on - strand, within CCNA_00585
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 610,842 + CCNA_03886 0.87 -0.2 610,862 - CCNA_03886 0.89 -0.1 610,864 + CCNA_03886 0.89 -0.2 610,874 + CCNA_03886 0.89 -0.7 610,904 + -0.6 610,905 + -0.2 610,912 - +0.9 610,913 - -0.6 610,921 - +0.5 610,921 - -0.1 610,947 + -0.5 611,008 + -1.5 611,026 - -0.0 611,027 + -0.6 611,063 - +0.3 611,072 + -0.4 611,078 + -0.7 611,090 + +0.7 611,144 + -0.0 611,144 + +0.3 611,144 + +0.3 611,144 + -0.7 611,144 + -1.8 611,144 + +0.3 611,152 - -1.7 611,152 - -0.9 611,152 - -1.1 611,152 - -0.2 611,152 - -1.8 611,154 + -0.5 611,178 + +1.3 611,214 + -1.3 611,214 + -1.9 611,234 - +1.1 611,284 + CCNA_00582 0.15 -0.3 611,284 + CCNA_00582 0.15 +0.4 611,284 + CCNA_00582 0.15 -0.3 611,284 + CCNA_00582 0.15 -0.4 611,284 + CCNA_00582 0.15 +0.0 611,292 - CCNA_00582 0.16 +0.8 611,292 - CCNA_00582 0.16 +0.6 611,311 + CCNA_00582 0.20 +0.0 611,388 + CCNA_00582 0.34 +0.0 611,413 + CCNA_00582 0.38 +0.8 611,457 + CCNA_00582 0.46 +0.6 611,457 + CCNA_00582 0.46 +0.3 611,457 + CCNA_00582 0.46 +0.3 611,465 + CCNA_00582 0.47 +1.1 611,465 - CCNA_00582 0.47 -1.5 611,470 + CCNA_00582 0.48 -0.7 611,478 - CCNA_00582 0.50 -1.3 611,483 + CCNA_00582 0.51 +0.1 611,509 - CCNA_00582 0.55 -2.0 611,509 - CCNA_00582 0.55 +0.5 611,524 + CCNA_00582 0.58 -0.9 611,581 + CCNA_00582 0.68 -0.5 611,589 - CCNA_00582 0.70 -0.4 611,589 - CCNA_00582 0.70 +1.5 611,612 + CCNA_00582 0.74 -0.3 611,621 + CCNA_00582 0.75 -0.3 611,624 - CCNA_00582 0.76 +0.2 611,650 - CCNA_00582 0.81 +0.4 611,705 + -0.6 611,760 - +2.4 611,760 - -0.1 611,779 + +0.4 611,779 + +0.4 611,779 + +0.1 611,779 + -0.6 611,779 + -1.4 611,779 + -0.7 611,779 + +0.0 611,779 + -1.7 611,779 + +0.5 611,779 + -0.5 611,779 + -0.8 611,779 + +0.1 611,779 + +1.4 611,779 + -0.1 611,779 + -0.3 611,779 + -0.5 611,779 + +0.2 611,779 + +1.3 611,779 + +0.7 611,779 + +0.2 611,779 + -0.3 611,779 + -1.6 611,779 + -0.3 611,779 + +1.5 611,779 + +0.1 611,779 + +0.0 611,779 + -0.6 611,779 + -0.9 611,779 + +0.4 611,779 + -0.1 611,779 + -0.6 611,779 + -0.3 611,787 - +1.7 611,787 - -0.3 611,787 - +0.1 611,787 - +0.1 611,787 - -1.5 611,787 - -0.6 611,787 - +0.1 611,787 - -0.4 611,787 - -0.1 611,787 - -0.2 611,787 - -0.8 611,787 - -1.5 611,787 - -0.5 611,787 - -0.8 611,787 - -1.3 611,787 - -1.1 611,787 - -0.3 611,787 - +0.2 611,787 - -0.0 611,787 - -0.3 611,787 - -0.3 611,787 - -0.0 611,787 - -0.5 611,787 - -1.5 611,787 - -0.0 611,787 - -0.8 611,787 - +1.9 611,787 - -0.2 611,787 - +0.1 611,787 - -0.2 611,787 - -0.0 611,787 - -0.6 611,789 + +0.6 611,789 + -0.4 611,820 - -0.3 611,825 + -0.1 611,835 + +0.1 611,883 + -0.5 611,903 + -0.0 611,911 - -0.2 611,973 + +0.5 611,973 + -0.8 611,979 + CCNA_00583 0.10 -0.6 612,011 + CCNA_00583 0.13 +0.2 612,030 + CCNA_00583 0.14 -0.4 612,044 + CCNA_00583 0.15 -1.5 612,057 + CCNA_00583 0.16 -0.2 612,073 - CCNA_00583 0.17 -0.6 612,091 - CCNA_00583 0.18 +0.9 612,113 + CCNA_00583 0.20 +0.8 612,147 - CCNA_00583 0.23 -2.4 612,147 - CCNA_00583 0.23 +0.5 612,159 + CCNA_00583 0.23 -0.4 612,161 + CCNA_00583 0.24 -0.2 612,178 + CCNA_00583 0.25 -0.7 612,203 - CCNA_00583 0.27 -1.2 612,203 - CCNA_00583 0.27 +0.3 612,212 + CCNA_00583 0.27 -0.9 612,222 + CCNA_00583 0.28 +0.1 612,222 + CCNA_00583 0.28 -0.6 612,283 + CCNA_00583 0.33 +1.2 612,330 + CCNA_00583 0.36 -0.2 612,362 - CCNA_00583 0.38 -1.7 612,364 + CCNA_00583 0.38 +0.1 612,364 + CCNA_00583 0.38 -1.1 612,364 + CCNA_00583 0.38 +0.6 612,372 - CCNA_00583 0.39 +1.0 612,398 + CCNA_00583 0.41 +0.1 612,419 - CCNA_00583 0.42 -0.4 612,420 - CCNA_00583 0.43 -0.2 612,440 - CCNA_00583 0.44 -0.8 612,451 + CCNA_00583 0.45 -1.0 612,456 + CCNA_00583 0.45 +0.3 612,456 + CCNA_00583 0.45 +0.1 612,467 + CCNA_00583 0.46 +2.7 612,482 + CCNA_00583 0.47 +0.1 612,485 - CCNA_00583 0.47 +0.6 612,491 - CCNA_00583 0.48 -0.5 612,509 + CCNA_00583 0.49 -1.9 612,517 - CCNA_00583 0.50 -1.1 612,517 - CCNA_00583 0.50 -0.3 612,568 - CCNA_00583 0.53 +0.2 612,577 - CCNA_00583 0.54 -0.6 612,613 + CCNA_00583 0.57 -1.5 612,618 + CCNA_00583 0.57 +0.1 612,621 - CCNA_00583 0.57 +0.8 612,626 - CCNA_00583 0.58 -0.1 612,649 + CCNA_00583 0.59 -0.3 612,661 + CCNA_00583 0.60 -0.3 612,662 + CCNA_00583 0.60 +1.6 612,667 + CCNA_00583 0.61 -0.4 612,679 + CCNA_00583 0.61 -0.8 612,795 + CCNA_00583 0.70 -1.0 612,804 + CCNA_00583 0.71 -0.1 612,812 - CCNA_00583 0.71 +0.5 612,816 - CCNA_00583 0.71 -0.9 612,841 + CCNA_00583 0.73 -0.3 612,849 - CCNA_00583 0.74 +0.4 612,849 - CCNA_00583 0.74 +1.3 612,849 - CCNA_00583 0.74 -1.2 612,863 + CCNA_00583 0.75 -0.1 612,912 + CCNA_00583 0.79 -0.1 612,916 - CCNA_00583 0.79 +0.3 613,032 - CCNA_00583 0.87 -1.9 613,038 + CCNA_00583 0.88 -0.1 613,045 + CCNA_00583 0.88 -0.3 613,045 + CCNA_00583 0.88 +0.5 613,053 - CCNA_00583 0.89 -0.2 613,084 + -0.2 613,110 - +1.0 613,155 - +0.3 613,164 + +0.1 613,164 - -0.6 613,394 + -0.0 613,402 - +0.0 613,464 + CCNA_00585 0.13 -0.3 613,464 + CCNA_00585 0.13 -0.2 613,472 - CCNA_00585 0.14 +0.4 613,472 - CCNA_00585 0.14 -0.4 613,472 - CCNA_00585 0.14 +0.7 613,472 - CCNA_00585 0.14 -0.9 613,472 - CCNA_00585 0.14 -0.0 613,472 - CCNA_00585 0.14 -0.7 613,472 - CCNA_00585 0.14 -0.6 613,472 - CCNA_00585 0.14 -0.2 613,472 - CCNA_00585 0.14 +0.1 613,472 - CCNA_00585 0.14 -1.5 613,472 - CCNA_00585 0.14 -0.6 613,472 - CCNA_00585 0.14 -1.1 613,478 + CCNA_00585 0.15 +0.1 613,482 + CCNA_00585 0.15 -0.3 613,496 - CCNA_00585 0.16 +0.0 613,497 - CCNA_00585 0.16 -0.6 613,506 - CCNA_00585 0.17 +0.1 613,511 - CCNA_00585 0.18 +0.2 613,575 - CCNA_00585 0.24 -1.7 613,577 + CCNA_00585 0.24 +0.2 613,580 - CCNA_00585 0.24 -0.2 613,598 - CCNA_00585 0.26 +0.3 613,614 - CCNA_00585 0.27 -1.1 613,653 - CCNA_00585 0.31 +0.4 613,687 - CCNA_00585 0.34 -1.4 613,744 + CCNA_00585 0.40 -0.4 613,777 + CCNA_00585 0.43 -1.2 613,782 + CCNA_00585 0.43 -0.7 613,788 - CCNA_00585 0.44 +0.2 613,790 - CCNA_00585 0.44 -1.4 613,872 + CCNA_00585 0.52 -0.3 613,872 + CCNA_00585 0.52 -2.6 613,882 + CCNA_00585 0.53 -1.4 613,908 - CCNA_00585 0.55 -0.8 613,911 - CCNA_00585 0.56 -0.1 613,914 - CCNA_00585 0.56 -1.3 613,928 + CCNA_00585 0.57 -0.7 613,979 - CCNA_00585 0.62 +0.3 614,000 - CCNA_00585 0.64 -1.1 614,038 + CCNA_00585 0.68 -0.1 614,041 - CCNA_00585 0.68 -0.2 614,046 - CCNA_00585 0.68 -0.4 614,054 - CCNA_00585 0.69 +0.8 614,077 + CCNA_00585 0.71 -0.7 614,079 + CCNA_00585 0.71 -0.5 614,086 + CCNA_00585 0.72 -0.5 614,087 - CCNA_00585 0.72 +0.1 614,087 - CCNA_00585 0.72 +1.1 614,094 - CCNA_00585 0.73 -2.1 614,096 + CCNA_00585 0.73 +0.4 614,137 - CCNA_00585 0.77 +0.4 614,137 - CCNA_00585 0.77 +0.7 614,140 + CCNA_00585 0.77 -0.9 614,140 + CCNA_00585 0.77 +0.9 614,148 - CCNA_00585 0.78 -1.5 614,148 - CCNA_00585 0.78 +0.4 614,148 - CCNA_00585 0.78 -1.5 614,148 - CCNA_00585 0.78 -1.2 614,148 - CCNA_00585 0.78 -0.2 614,158 - CCNA_00585 0.79 -0.2 614,168 - CCNA_00585 0.80 -0.6
Or see this region's nucleotide sequence