Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00385

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00384 and CCNA_00385 are separated by 47 nucleotidesCCNA_00385 and CCNA_00386 overlap by 4 nucleotidesCCNA_00386 and CCNA_00387 are separated by 129 nucleotides CCNA_00384: CCNA_00384 - glucan endo-1,3-beta-glucosidase, at 400,574 to 401,479 _00384 CCNA_00385: CCNA_00385 - multidrug resistance protein, at 401,527 to 402,861 _00385 CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445 _00386 CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997 _00387 Position (kb) 401 402 403Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 400.558 kb on + strandat 400.577 kb on - strandat 400.580 kb on - strandat 400.593 kb on + strandat 400.610 kb on + strandat 400.647 kb on + strandat 400.672 kb on + strand, within CCNA_00384at 400.683 kb on - strand, within CCNA_00384at 400.694 kb on - strand, within CCNA_00384at 400.774 kb on - strand, within CCNA_00384at 400.781 kb on + strand, within CCNA_00384at 400.781 kb on + strand, within CCNA_00384at 400.781 kb on + strand, within CCNA_00384at 400.789 kb on - strand, within CCNA_00384at 400.789 kb on - strand, within CCNA_00384at 400.832 kb on - strand, within CCNA_00384at 400.835 kb on + strand, within CCNA_00384at 400.877 kb on + strand, within CCNA_00384at 400.896 kb on - strand, within CCNA_00384at 400.896 kb on - strand, within CCNA_00384at 400.897 kb on - strand, within CCNA_00384at 400.911 kb on + strand, within CCNA_00384at 400.942 kb on - strand, within CCNA_00384at 400.989 kb on - strand, within CCNA_00384at 400.992 kb on + strand, within CCNA_00384at 401.033 kb on - strand, within CCNA_00384at 401.052 kb on - strand, within CCNA_00384at 401.113 kb on - strand, within CCNA_00384at 401.113 kb on - strand, within CCNA_00384at 401.204 kb on - strand, within CCNA_00384at 401.204 kb on - strand, within CCNA_00384at 401.205 kb on + strand, within CCNA_00384at 401.222 kb on + strand, within CCNA_00384at 401.275 kb on - strand, within CCNA_00384at 401.285 kb on + strand, within CCNA_00384at 401.319 kb on + strand, within CCNA_00384at 401.322 kb on - strand, within CCNA_00384at 401.389 kb on + strandat 401.422 kb on + strandat 401.435 kb on + strandat 401.435 kb on + strandat 401.435 kb on + strandat 401.439 kb on - strandat 401.445 kb on + strandat 401.447 kb on + strandat 401.512 kb on + strandat 401.512 kb on + strandat 401.513 kb on + strandat 401.521 kb on - strandat 401.521 kb on - strandat 401.525 kb on + strandat 401.546 kb on - strandat 401.548 kb on - strandat 401.606 kb on + strandat 401.619 kb on - strandat 401.641 kb on + strandat 401.645 kb on - strandat 401.694 kb on + strand, within CCNA_00385at 401.720 kb on + strand, within CCNA_00385at 401.722 kb on + strand, within CCNA_00385at 401.753 kb on - strand, within CCNA_00385at 401.755 kb on + strand, within CCNA_00385at 401.765 kb on - strand, within CCNA_00385at 401.778 kb on + strand, within CCNA_00385at 401.778 kb on + strand, within CCNA_00385at 401.778 kb on + strand, within CCNA_00385at 401.778 kb on + strand, within CCNA_00385at 401.778 kb on + strand, within CCNA_00385at 401.785 kb on + strand, within CCNA_00385at 401.786 kb on + strand, within CCNA_00385at 401.786 kb on + strand, within CCNA_00385at 401.790 kb on + strand, within CCNA_00385at 401.790 kb on + strand, within CCNA_00385at 401.798 kb on - strand, within CCNA_00385at 401.800 kb on + strand, within CCNA_00385at 401.812 kb on + strand, within CCNA_00385at 401.843 kb on - strand, within CCNA_00385at 401.857 kb on + strand, within CCNA_00385at 401.857 kb on - strand, within CCNA_00385at 401.906 kb on + strand, within CCNA_00385at 401.906 kb on + strand, within CCNA_00385at 401.906 kb on + strand, within CCNA_00385at 401.906 kb on + strand, within CCNA_00385at 401.914 kb on - strand, within CCNA_00385at 401.914 kb on - strand, within CCNA_00385at 401.914 kb on - strand, within CCNA_00385at 401.916 kb on + strand, within CCNA_00385at 401.924 kb on - strand, within CCNA_00385at 401.924 kb on - strand, within CCNA_00385at 401.934 kb on + strand, within CCNA_00385at 401.942 kb on - strand, within CCNA_00385at 401.961 kb on + strand, within CCNA_00385at 401.963 kb on + strand, within CCNA_00385at 401.968 kb on + strand, within CCNA_00385at 401.973 kb on + strand, within CCNA_00385at 401.990 kb on - strand, within CCNA_00385at 402.008 kb on + strand, within CCNA_00385at 402.008 kb on + strand, within CCNA_00385at 402.016 kb on - strand, within CCNA_00385at 402.042 kb on - strand, within CCNA_00385at 402.051 kb on - strand, within CCNA_00385at 402.075 kb on - strand, within CCNA_00385at 402.075 kb on - strand, within CCNA_00385at 402.093 kb on + strand, within CCNA_00385at 402.101 kb on - strand, within CCNA_00385at 402.101 kb on - strand, within CCNA_00385at 402.123 kb on + strand, within CCNA_00385at 402.134 kb on + strand, within CCNA_00385at 402.172 kb on + strand, within CCNA_00385at 402.180 kb on - strand, within CCNA_00385at 402.221 kb on + strand, within CCNA_00385at 402.231 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.284 kb on + strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.292 kb on - strand, within CCNA_00385at 402.307 kb on + strand, within CCNA_00385at 402.312 kb on + strand, within CCNA_00385at 402.312 kb on + strand, within CCNA_00385at 402.312 kb on + strand, within CCNA_00385at 402.312 kb on + strand, within CCNA_00385at 402.320 kb on - strand, within CCNA_00385at 402.320 kb on - strand, within CCNA_00385at 402.320 kb on - strand, within CCNA_00385at 402.320 kb on - strand, within CCNA_00385at 402.320 kb on - strand, within CCNA_00385at 402.327 kb on - strand, within CCNA_00385at 402.327 kb on - strand, within CCNA_00385at 402.390 kb on - strand, within CCNA_00385at 402.397 kb on + strand, within CCNA_00385at 402.398 kb on - strand, within CCNA_00385at 402.429 kb on + strand, within CCNA_00385at 402.513 kb on + strand, within CCNA_00385at 402.521 kb on - strand, within CCNA_00385at 402.521 kb on - strand, within CCNA_00385at 402.540 kb on - strand, within CCNA_00385at 402.546 kb on + strand, within CCNA_00385at 402.546 kb on + strand, within CCNA_00385at 402.561 kb on - strand, within CCNA_00385at 402.580 kb on + strand, within CCNA_00385at 402.587 kb on - strand, within CCNA_00385at 402.588 kb on - strand, within CCNA_00385at 402.599 kb on + strand, within CCNA_00385at 402.607 kb on - strand, within CCNA_00385at 402.634 kb on - strand, within CCNA_00385at 402.678 kb on + strand, within CCNA_00385at 402.721 kb on + strand, within CCNA_00385at 402.739 kb on + strandat 402.745 kb on + strandat 402.752 kb on - strandat 402.754 kb on - strandat 402.756 kb on + strandat 402.756 kb on + strandat 402.797 kb on + strandat 402.812 kb on - strandat 402.827 kb on + strandat 402.867 kb on + strandat 402.867 kb on + strandat 402.875 kb on - strandat 402.875 kb on - strandat 402.921 kb on - strand, within CCNA_00386at 402.923 kb on + strand, within CCNA_00386at 402.923 kb on + strand, within CCNA_00386at 402.931 kb on - strand, within CCNA_00386at 402.931 kb on - strand, within CCNA_00386at 402.935 kb on + strand, within CCNA_00386at 402.943 kb on + strand, within CCNA_00386at 402.969 kb on + strand, within CCNA_00386at 402.984 kb on - strand, within CCNA_00386at 402.991 kb on + strand, within CCNA_00386at 402.991 kb on + strand, within CCNA_00386at 402.999 kb on - strand, within CCNA_00386at 403.018 kb on + strand, within CCNA_00386at 403.032 kb on - strand, within CCNA_00386at 403.032 kb on - strand, within CCNA_00386at 403.066 kb on + strand, within CCNA_00386at 403.089 kb on - strand, within CCNA_00386at 403.106 kb on - strand, within CCNA_00386at 403.117 kb on - strand, within CCNA_00386at 403.118 kb on + strand, within CCNA_00386at 403.118 kb on + strand, within CCNA_00386at 403.118 kb on + strand, within CCNA_00386at 403.126 kb on - strand, within CCNA_00386at 403.126 kb on - strand, within CCNA_00386at 403.185 kb on - strand, within CCNA_00386at 403.258 kb on + strand, within CCNA_00386at 403.266 kb on + strand, within CCNA_00386at 403.266 kb on - strand, within CCNA_00386at 403.281 kb on - strand, within CCNA_00386at 403.291 kb on - strand, within CCNA_00386at 403.296 kb on + strand, within CCNA_00386at 403.299 kb on - strand, within CCNA_00386at 403.304 kb on - strand, within CCNA_00386at 403.315 kb on - strand, within CCNA_00386at 403.328 kb on + strand, within CCNA_00386at 403.340 kb on + strand, within CCNA_00386at 403.348 kb on - strand, within CCNA_00386at 403.358 kb on - strand, within CCNA_00386at 403.381 kb on + strand, within CCNA_00386at 403.387 kb on + strandat 403.390 kb on - strandat 403.408 kb on - strandat 403.443 kb on - strandat 403.550 kb on + strandat 403.591 kb on - strandat 403.625 kb on + strand, within CCNA_00387at 403.644 kb on + strand, within CCNA_00387at 403.645 kb on - strand, within CCNA_00387at 403.646 kb on - strand, within CCNA_00387at 403.649 kb on + strand, within CCNA_00387at 403.652 kb on - strand, within CCNA_00387at 403.652 kb on - strand, within CCNA_00387at 403.652 kb on - strand, within CCNA_00387at 403.657 kb on - strand, within CCNA_00387at 403.663 kb on + strand, within CCNA_00387at 403.744 kb on + strand, within CCNA_00387at 403.780 kb on - strand, within CCNA_00387at 403.818 kb on - strand, within CCNA_00387at 403.820 kb on + strand, within CCNA_00387at 403.823 kb on - strand, within CCNA_00387at 403.839 kb on - strand, within CCNA_00387at 403.842 kb on + strand, within CCNA_00387at 403.842 kb on + strand, within CCNA_00387at 403.850 kb on - strand, within CCNA_00387

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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400,558 + +0.8
400,577 - -0.5
400,580 - -0.6
400,593 + -0.9
400,610 + -0.6
400,647 + +1.0
400,672 + CCNA_00384 0.11 -0.6
400,683 - CCNA_00384 0.12 +0.0
400,694 - CCNA_00384 0.13 +0.8
400,774 - CCNA_00384 0.22 -2.2
400,781 + CCNA_00384 0.23 -0.9
400,781 + CCNA_00384 0.23 +0.9
400,781 + CCNA_00384 0.23 -0.1
400,789 - CCNA_00384 0.24 -0.4
400,789 - CCNA_00384 0.24 -0.2
400,832 - CCNA_00384 0.28 +0.4
400,835 + CCNA_00384 0.29 -0.4
400,877 + CCNA_00384 0.33 +0.4
400,896 - CCNA_00384 0.36 +0.1
400,896 - CCNA_00384 0.36 -0.0
400,897 - CCNA_00384 0.36 -0.5
400,911 + CCNA_00384 0.37 -0.4
400,942 - CCNA_00384 0.41 -0.7
400,989 - CCNA_00384 0.46 -1.4
400,992 + CCNA_00384 0.46 -0.8
401,033 - CCNA_00384 0.51 -1.3
401,052 - CCNA_00384 0.53 +0.2
401,113 - CCNA_00384 0.59 +0.2
401,113 - CCNA_00384 0.59 -1.2
401,204 - CCNA_00384 0.70 +0.6
401,204 - CCNA_00384 0.70 +0.2
401,205 + CCNA_00384 0.70 -1.3
401,222 + CCNA_00384 0.72 +1.0
401,275 - CCNA_00384 0.77 -0.8
401,285 + CCNA_00384 0.78 -0.2
401,319 + CCNA_00384 0.82 -0.7
401,322 - CCNA_00384 0.83 -0.4
401,389 + +1.1
401,422 + -1.0
401,435 + +1.0
401,435 + +0.3
401,435 + -0.6
401,439 - -0.9
401,445 + +0.3
401,447 + +0.5
401,512 + -1.2
401,512 + +0.2
401,513 + +0.7
401,521 - +0.2
401,521 - -0.0
401,525 + -0.0
401,546 - -2.4
401,548 - -0.1
401,606 + +0.9
401,619 - -0.9
401,641 + -0.5
401,645 - +0.6
401,694 + CCNA_00385 0.13 -1.3
401,720 + CCNA_00385 0.14 -0.3
401,722 + CCNA_00385 0.15 +0.2
401,753 - CCNA_00385 0.17 -0.6
401,755 + CCNA_00385 0.17 -1.3
401,765 - CCNA_00385 0.18 +0.0
401,778 + CCNA_00385 0.19 -1.6
401,778 + CCNA_00385 0.19 +0.1
401,778 + CCNA_00385 0.19 +0.4
401,778 + CCNA_00385 0.19 -1.6
401,778 + CCNA_00385 0.19 -0.0
401,785 + CCNA_00385 0.19 -1.1
401,786 + CCNA_00385 0.19 +0.3
401,786 + CCNA_00385 0.19 +0.7
401,790 + CCNA_00385 0.20 +0.9
401,790 + CCNA_00385 0.20 -0.7
401,798 - CCNA_00385 0.20 -1.6
401,800 + CCNA_00385 0.20 -0.3
401,812 + CCNA_00385 0.21 -0.1
401,843 - CCNA_00385 0.24 -0.6
401,857 + CCNA_00385 0.25 -0.2
401,857 - CCNA_00385 0.25 +0.5
401,906 + CCNA_00385 0.28 +0.8
401,906 + CCNA_00385 0.28 +0.9
401,906 + CCNA_00385 0.28 +0.5
401,906 + CCNA_00385 0.28 +0.1
401,914 - CCNA_00385 0.29 +0.3
401,914 - CCNA_00385 0.29 +0.1
401,914 - CCNA_00385 0.29 -1.2
401,916 + CCNA_00385 0.29 -0.3
401,924 - CCNA_00385 0.30 -0.2
401,924 - CCNA_00385 0.30 -0.5
401,934 + CCNA_00385 0.30 -1.1
401,942 - CCNA_00385 0.31 -0.5
401,961 + CCNA_00385 0.33 -0.4
401,963 + CCNA_00385 0.33 +0.3
401,968 + CCNA_00385 0.33 +0.2
401,973 + CCNA_00385 0.33 -0.6
401,990 - CCNA_00385 0.35 +0.6
402,008 + CCNA_00385 0.36 +1.6
402,008 + CCNA_00385 0.36 +0.3
402,016 - CCNA_00385 0.37 +0.1
402,042 - CCNA_00385 0.39 +0.1
402,051 - CCNA_00385 0.39 +0.1
402,075 - CCNA_00385 0.41 -1.6
402,075 - CCNA_00385 0.41 -0.3
402,093 + CCNA_00385 0.42 +0.1
402,101 - CCNA_00385 0.43 -1.3
402,101 - CCNA_00385 0.43 -0.2
402,123 + CCNA_00385 0.45 +0.6
402,134 + CCNA_00385 0.45 -0.3
402,172 + CCNA_00385 0.48 +0.1
402,180 - CCNA_00385 0.49 -0.7
402,221 + CCNA_00385 0.52 +0.9
402,231 + CCNA_00385 0.53 +1.3
402,284 + CCNA_00385 0.57 +0.3
402,284 + CCNA_00385 0.57 +0.4
402,284 + CCNA_00385 0.57 -0.1
402,284 + CCNA_00385 0.57 -0.4
402,284 + CCNA_00385 0.57 -0.2
402,284 + CCNA_00385 0.57 -0.3
402,284 + CCNA_00385 0.57 +0.1
402,284 + CCNA_00385 0.57 -1.9
402,284 + CCNA_00385 0.57 +0.8
402,284 + CCNA_00385 0.57 -0.0
402,292 - CCNA_00385 0.57 +0.6
402,292 - CCNA_00385 0.57 -0.1
402,292 - CCNA_00385 0.57 -0.2
402,292 - CCNA_00385 0.57 +1.2
402,292 - CCNA_00385 0.57 -1.2
402,292 - CCNA_00385 0.57 +0.3
402,292 - CCNA_00385 0.57 +0.3
402,292 - CCNA_00385 0.57 +0.5
402,292 - CCNA_00385 0.57 -0.2
402,292 - CCNA_00385 0.57 +0.7
402,292 - CCNA_00385 0.57 +0.7
402,292 - CCNA_00385 0.57 -0.2
402,292 - CCNA_00385 0.57 -2.2
402,307 + CCNA_00385 0.58 +0.1
402,312 + CCNA_00385 0.59 -0.7
402,312 + CCNA_00385 0.59 -0.0
402,312 + CCNA_00385 0.59 +1.1
402,312 + CCNA_00385 0.59 -0.4
402,320 - CCNA_00385 0.59 +0.2
402,320 - CCNA_00385 0.59 -1.9
402,320 - CCNA_00385 0.59 -0.4
402,320 - CCNA_00385 0.59 +0.3
402,320 - CCNA_00385 0.59 -2.1
402,327 - CCNA_00385 0.60 -1.1
402,327 - CCNA_00385 0.60 -1.4
402,390 - CCNA_00385 0.65 -0.8
402,397 + CCNA_00385 0.65 -0.7
402,398 - CCNA_00385 0.65 -0.2
402,429 + CCNA_00385 0.68 -0.4
402,513 + CCNA_00385 0.74 -0.1
402,521 - CCNA_00385 0.74 +0.1
402,521 - CCNA_00385 0.74 -0.7
402,540 - CCNA_00385 0.76 -0.6
402,546 + CCNA_00385 0.76 +1.6
402,546 + CCNA_00385 0.76 -0.4
402,561 - CCNA_00385 0.77 -0.2
402,580 + CCNA_00385 0.79 +0.3
402,587 - CCNA_00385 0.79 +0.0
402,588 - CCNA_00385 0.79 +0.2
402,599 + CCNA_00385 0.80 +0.0
402,607 - CCNA_00385 0.81 +0.0
402,634 - CCNA_00385 0.83 -0.6
402,678 + CCNA_00385 0.86 -0.3
402,721 + CCNA_00385 0.89 -0.2
402,739 + +0.3
402,745 + +1.2
402,752 - -0.7
402,754 - +1.9
402,756 + -1.0
402,756 + -0.0
402,797 + -0.7
402,812 - -0.9
402,827 + -0.1
402,867 + -0.4
402,867 + -0.4
402,875 - +0.9
402,875 - +2.4
402,921 - CCNA_00386 0.11 -1.9
402,923 + CCNA_00386 0.11 +0.4
402,923 + CCNA_00386 0.11 +0.5
402,931 - CCNA_00386 0.12 +0.3
402,931 - CCNA_00386 0.12 -0.7
402,935 + CCNA_00386 0.13 +0.2
402,943 + CCNA_00386 0.14 -0.7
402,969 + CCNA_00386 0.19 -0.8
402,984 - CCNA_00386 0.21 -0.8
402,991 + CCNA_00386 0.23 -3.1
402,991 + CCNA_00386 0.23 +0.6
402,999 - CCNA_00386 0.24 +0.7
403,018 + CCNA_00386 0.27 -0.7
403,032 - CCNA_00386 0.30 +0.3
403,032 - CCNA_00386 0.30 +0.9
403,066 + CCNA_00386 0.35 -0.8
403,089 - CCNA_00386 0.39 -0.1
403,106 - CCNA_00386 0.42 +0.6
403,117 - CCNA_00386 0.44 +0.0
403,118 + CCNA_00386 0.44 -1.0
403,118 + CCNA_00386 0.44 +0.4
403,118 + CCNA_00386 0.44 -0.6
403,126 - CCNA_00386 0.46 -0.1
403,126 - CCNA_00386 0.46 +0.5
403,185 - CCNA_00386 0.56 +1.7
403,258 + CCNA_00386 0.68 +0.8
403,266 + CCNA_00386 0.69 +0.3
403,266 - CCNA_00386 0.69 +0.0
403,281 - CCNA_00386 0.72 -3.0
403,291 - CCNA_00386 0.74 -0.2
403,296 + CCNA_00386 0.74 +0.2
403,299 - CCNA_00386 0.75 +0.0
403,304 - CCNA_00386 0.76 +0.3
403,315 - CCNA_00386 0.78 -0.4
403,328 + CCNA_00386 0.80 -1.3
403,340 + CCNA_00386 0.82 +0.2
403,348 - CCNA_00386 0.83 +0.3
403,358 - CCNA_00386 0.85 +0.1
403,381 + CCNA_00386 0.89 -0.7
403,387 + -0.2
403,390 - +0.6
403,408 - +1.5
403,443 - -0.7
403,550 + -0.2
403,591 - -0.6
403,625 + CCNA_00387 0.12 +0.2
403,644 + CCNA_00387 0.16 +0.2
403,645 - CCNA_00387 0.17 -0.7
403,646 - CCNA_00387 0.17 +0.4
403,649 + CCNA_00387 0.17 +0.3
403,652 - CCNA_00387 0.18 -0.6
403,652 - CCNA_00387 0.18 -0.0
403,652 - CCNA_00387 0.18 -0.3
403,657 - CCNA_00387 0.19 -0.1
403,663 + CCNA_00387 0.21 +1.1
403,744 + CCNA_00387 0.40 +0.7
403,780 - CCNA_00387 0.48 -1.3
403,818 - CCNA_00387 0.57 +0.1
403,820 + CCNA_00387 0.58 -0.1
403,823 - CCNA_00387 0.59 +0.4
403,839 - CCNA_00387 0.62 +0.2
403,842 + CCNA_00387 0.63 +1.6
403,842 + CCNA_00387 0.63 -0.5
403,850 - CCNA_00387 0.65 +0.5

Or see this region's nucleotide sequence