Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00366 and CCNA_00367 overlap by 4 nucleotides CCNA_00367 and CCNA_00368 are separated by 5 nucleotides CCNA_00368 and CCNA_00369 are separated by 149 nucleotides
CCNA_00366: CCNA_00366 - phosphonates transport ATP-binding protein phnC, at 383,009 to 383,803
_00366
CCNA_00367: CCNA_00367 - phosphonates-binding protein, at 383,800 to 384,825
_00367
CCNA_00368: CCNA_00368 - phosphonates transport system permease protein phnE, at 384,831 to 385,667
_00368
CCNA_00369: CCNA_00369 - magnesium and cobalt efflux protein corC-like protein, at 385,817 to 387,130
_00369
Position (kb) 383
384
385 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 382.801 kb on - strand at 382.849 kb on - strand at 382.893 kb on - strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.898 kb on + strand at 382.906 kb on - strand at 382.906 kb on - strand at 382.906 kb on - strand at 383.014 kb on + strand at 383.022 kb on + strand at 383.082 kb on - strand at 383.099 kb on - strand, within CCNA_00366 at 383.102 kb on + strand, within CCNA_00366 at 383.171 kb on + strand, within CCNA_00366 at 383.171 kb on + strand, within CCNA_00366 at 383.171 kb on + strand, within CCNA_00366 at 383.178 kb on + strand, within CCNA_00366 at 383.178 kb on + strand, within CCNA_00366 at 383.178 kb on + strand, within CCNA_00366 at 383.191 kb on - strand, within CCNA_00366 at 383.230 kb on - strand, within CCNA_00366 at 383.241 kb on - strand, within CCNA_00366 at 383.259 kb on - strand, within CCNA_00366 at 383.292 kb on + strand, within CCNA_00366 at 383.292 kb on + strand, within CCNA_00366 at 383.320 kb on + strand, within CCNA_00366 at 383.328 kb on - strand, within CCNA_00366 at 383.353 kb on + strand, within CCNA_00366 at 383.371 kb on - strand, within CCNA_00366 at 383.386 kb on + strand, within CCNA_00366 at 383.417 kb on + strand, within CCNA_00366 at 383.425 kb on - strand, within CCNA_00366 at 383.453 kb on - strand, within CCNA_00366 at 383.486 kb on - strand, within CCNA_00366 at 383.500 kb on + strand, within CCNA_00366 at 383.510 kb on - strand, within CCNA_00366 at 383.521 kb on + strand, within CCNA_00366 at 383.529 kb on - strand, within CCNA_00366 at 383.538 kb on - strand, within CCNA_00366 at 383.575 kb on - strand, within CCNA_00366 at 383.581 kb on + strand, within CCNA_00366 at 383.582 kb on + strand, within CCNA_00366 at 383.589 kb on - strand, within CCNA_00366 at 383.623 kb on + strand, within CCNA_00366 at 383.631 kb on - strand, within CCNA_00366 at 383.636 kb on + strand, within CCNA_00366 at 383.641 kb on + strand, within CCNA_00366 at 383.645 kb on - strand, within CCNA_00366 at 383.651 kb on + strand, within CCNA_00366 at 383.658 kb on - strand, within CCNA_00366 at 383.658 kb on - strand, within CCNA_00366 at 383.658 kb on - strand, within CCNA_00366 at 383.660 kb on + strand, within CCNA_00366 at 383.660 kb on - strand, within CCNA_00366 at 383.662 kb on + strand, within CCNA_00366 at 383.670 kb on - strand, within CCNA_00366 at 383.670 kb on - strand, within CCNA_00366 at 383.704 kb on + strand, within CCNA_00366 at 383.704 kb on + strand, within CCNA_00366 at 383.705 kb on + strand, within CCNA_00366 at 383.705 kb on + strand, within CCNA_00366 at 383.705 kb on + strand, within CCNA_00366 at 383.705 kb on + strand, within CCNA_00366 at 383.712 kb on - strand, within CCNA_00366 at 383.712 kb on - strand, within CCNA_00366 at 383.713 kb on - strand, within CCNA_00366 at 383.713 kb on - strand, within CCNA_00366 at 383.803 kb on - strand at 383.818 kb on + strand at 383.839 kb on + strand at 383.845 kb on + strand at 383.845 kb on + strand at 383.845 kb on + strand at 383.850 kb on + strand at 383.912 kb on + strand, within CCNA_00367 at 383.917 kb on - strand, within CCNA_00367 at 383.917 kb on - strand, within CCNA_00367 at 383.940 kb on - strand, within CCNA_00367 at 383.946 kb on + strand, within CCNA_00367 at 383.998 kb on - strand, within CCNA_00367 at 384.041 kb on - strand, within CCNA_00367 at 384.074 kb on + strand, within CCNA_00367 at 384.121 kb on + strand, within CCNA_00367 at 384.121 kb on + strand, within CCNA_00367 at 384.142 kb on - strand, within CCNA_00367 at 384.144 kb on + strand, within CCNA_00367 at 384.181 kb on - strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.205 kb on + strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.213 kb on - strand, within CCNA_00367 at 384.222 kb on - strand, within CCNA_00367 at 384.267 kb on - strand, within CCNA_00367 at 384.283 kb on + strand, within CCNA_00367 at 384.290 kb on + strand, within CCNA_00367 at 384.296 kb on + strand, within CCNA_00367 at 384.298 kb on - strand, within CCNA_00367 at 384.303 kb on - strand, within CCNA_00367 at 384.305 kb on - strand, within CCNA_00367 at 384.327 kb on - strand, within CCNA_00367 at 384.336 kb on - strand, within CCNA_00367 at 384.374 kb on + strand, within CCNA_00367 at 384.374 kb on - strand, within CCNA_00367 at 384.427 kb on - strand, within CCNA_00367 at 384.429 kb on + strand, within CCNA_00367 at 384.429 kb on + strand, within CCNA_00367 at 384.437 kb on - strand, within CCNA_00367 at 384.437 kb on - strand, within CCNA_00367 at 384.448 kb on + strand, within CCNA_00367 at 384.462 kb on + strand, within CCNA_00367 at 384.471 kb on + strand, within CCNA_00367 at 384.481 kb on - strand, within CCNA_00367 at 384.482 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.507 kb on + strand, within CCNA_00367 at 384.508 kb on + strand, within CCNA_00367 at 384.520 kb on - strand, within CCNA_00367 at 384.520 kb on - strand, within CCNA_00367 at 384.539 kb on + strand, within CCNA_00367 at 384.566 kb on + strand, within CCNA_00367 at 384.598 kb on - strand, within CCNA_00367 at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.726 kb on + strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.734 kb on - strand at 384.740 kb on - strand at 384.751 kb on + strand at 384.759 kb on - strand at 384.759 kb on - strand at 384.762 kb on + strand at 384.762 kb on + strand at 384.762 kb on + strand at 384.767 kb on + strand at 384.770 kb on - strand at 384.770 kb on - strand at 384.824 kb on - strand at 384.859 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.902 kb on - strand at 384.908 kb on - strand at 384.914 kb on + strand at 384.915 kb on - strand, within CCNA_00368 at 384.920 kb on - strand, within CCNA_00368 at 384.949 kb on + strand, within CCNA_00368 at 385.013 kb on - strand, within CCNA_00368 at 385.027 kb on + strand, within CCNA_00368 at 385.067 kb on + strand, within CCNA_00368 at 385.136 kb on - strand, within CCNA_00368 at 385.136 kb on - strand, within CCNA_00368 at 385.136 kb on - strand, within CCNA_00368 at 385.152 kb on + strand, within CCNA_00368 at 385.216 kb on + strand, within CCNA_00368 at 385.224 kb on - strand, within CCNA_00368 at 385.234 kb on - strand, within CCNA_00368 at 385.254 kb on + strand, within CCNA_00368 at 385.268 kb on - strand, within CCNA_00368 at 385.273 kb on + strand, within CCNA_00368 at 385.287 kb on - strand, within CCNA_00368 at 385.334 kb on + strand, within CCNA_00368 at 385.340 kb on + strand, within CCNA_00368 at 385.343 kb on - strand, within CCNA_00368 at 385.379 kb on + strand, within CCNA_00368 at 385.387 kb on - strand, within CCNA_00368 at 385.419 kb on - strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.465 kb on + strand, within CCNA_00368 at 385.473 kb on - strand, within CCNA_00368 at 385.475 kb on + strand, within CCNA_00368 at 385.478 kb on - strand, within CCNA_00368 at 385.478 kb on - strand, within CCNA_00368 at 385.478 kb on - strand, within CCNA_00368 at 385.483 kb on - strand, within CCNA_00368 at 385.483 kb on - strand, within CCNA_00368 at 385.509 kb on + strand, within CCNA_00368 at 385.517 kb on - strand, within CCNA_00368 at 385.517 kb on - strand, within CCNA_00368 at 385.609 kb on - strand at 385.645 kb on - strand at 385.645 kb on - strand at 385.645 kb on - strand at 385.656 kb on + strand at 385.656 kb on + strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.661 kb on + strand at 385.664 kb on - strand at 385.664 kb on - strand at 385.669 kb on - strand at 385.669 kb on - strand at 385.674 kb on - strand at 385.768 kb on - strand at 385.805 kb on + strand at 385.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 382,801 - -0.5 382,849 - -1.4 382,893 - -1.1 382,898 + -0.1 382,898 + -0.4 382,898 + +0.1 382,898 + -0.4 382,898 + -0.0 382,898 + +0.1 382,898 + +2.2 382,906 - -2.5 382,906 - -0.1 382,906 - -1.6 383,014 + +0.1 383,022 + -0.5 383,082 - -0.4 383,099 - CCNA_00366 0.11 -0.5 383,102 + CCNA_00366 0.12 -0.5 383,171 + CCNA_00366 0.20 +0.6 383,171 + CCNA_00366 0.20 +0.5 383,171 + CCNA_00366 0.20 +0.1 383,178 + CCNA_00366 0.21 +0.2 383,178 + CCNA_00366 0.21 -0.4 383,178 + CCNA_00366 0.21 +0.3 383,191 - CCNA_00366 0.23 -0.5 383,230 - CCNA_00366 0.28 -0.3 383,241 - CCNA_00366 0.29 -0.4 383,259 - CCNA_00366 0.31 +0.5 383,292 + CCNA_00366 0.36 -0.1 383,292 + CCNA_00366 0.36 -0.1 383,320 + CCNA_00366 0.39 +1.6 383,328 - CCNA_00366 0.40 -0.3 383,353 + CCNA_00366 0.43 -0.0 383,371 - CCNA_00366 0.46 +0.5 383,386 + CCNA_00366 0.47 +0.1 383,417 + CCNA_00366 0.51 -0.1 383,425 - CCNA_00366 0.52 -1.0 383,453 - CCNA_00366 0.56 +0.5 383,486 - CCNA_00366 0.60 -2.8 383,500 + CCNA_00366 0.62 +0.4 383,510 - CCNA_00366 0.63 -0.4 383,521 + CCNA_00366 0.64 -0.5 383,529 - CCNA_00366 0.65 +0.3 383,538 - CCNA_00366 0.67 -1.9 383,575 - CCNA_00366 0.71 +0.6 383,581 + CCNA_00366 0.72 -0.0 383,582 + CCNA_00366 0.72 +0.5 383,589 - CCNA_00366 0.73 -0.6 383,623 + CCNA_00366 0.77 +0.8 383,631 - CCNA_00366 0.78 -1.5 383,636 + CCNA_00366 0.79 -1.1 383,641 + CCNA_00366 0.79 +0.5 383,645 - CCNA_00366 0.80 -0.6 383,651 + CCNA_00366 0.81 -0.0 383,658 - CCNA_00366 0.82 +0.4 383,658 - CCNA_00366 0.82 -0.8 383,658 - CCNA_00366 0.82 -0.0 383,660 + CCNA_00366 0.82 +0.3 383,660 - CCNA_00366 0.82 -0.2 383,662 + CCNA_00366 0.82 +0.1 383,670 - CCNA_00366 0.83 -0.7 383,670 - CCNA_00366 0.83 +0.5 383,704 + CCNA_00366 0.87 -0.9 383,704 + CCNA_00366 0.87 +0.3 383,705 + CCNA_00366 0.88 -0.1 383,705 + CCNA_00366 0.88 -0.4 383,705 + CCNA_00366 0.88 +0.4 383,705 + CCNA_00366 0.88 +0.3 383,712 - CCNA_00366 0.88 -0.4 383,712 - CCNA_00366 0.88 +0.0 383,713 - CCNA_00366 0.89 -0.3 383,713 - CCNA_00366 0.89 -2.1 383,803 - -0.3 383,818 + -0.3 383,839 + +0.3 383,845 + +0.5 383,845 + -0.4 383,845 + +0.4 383,850 + +0.4 383,912 + CCNA_00367 0.11 -0.1 383,917 - CCNA_00367 0.11 +0.7 383,917 - CCNA_00367 0.11 -0.3 383,940 - CCNA_00367 0.14 -0.4 383,946 + CCNA_00367 0.14 +0.8 383,998 - CCNA_00367 0.19 +0.2 384,041 - CCNA_00367 0.23 +2.9 384,074 + CCNA_00367 0.27 +0.2 384,121 + CCNA_00367 0.31 -0.0 384,121 + CCNA_00367 0.31 +0.0 384,142 - CCNA_00367 0.33 -1.3 384,144 + CCNA_00367 0.34 +0.3 384,181 - CCNA_00367 0.37 -0.8 384,205 + CCNA_00367 0.39 +0.7 384,205 + CCNA_00367 0.39 -0.1 384,205 + CCNA_00367 0.39 +0.1 384,205 + CCNA_00367 0.39 +0.1 384,205 + CCNA_00367 0.39 +0.7 384,205 + CCNA_00367 0.39 +1.2 384,205 + CCNA_00367 0.39 -0.5 384,213 - CCNA_00367 0.40 +0.0 384,213 - CCNA_00367 0.40 -1.4 384,213 - CCNA_00367 0.40 -1.1 384,213 - CCNA_00367 0.40 -0.2 384,222 - CCNA_00367 0.41 -0.9 384,267 - CCNA_00367 0.46 -0.3 384,283 + CCNA_00367 0.47 +0.2 384,290 + CCNA_00367 0.48 -0.7 384,296 + CCNA_00367 0.48 -0.2 384,298 - CCNA_00367 0.49 -1.3 384,303 - CCNA_00367 0.49 +0.2 384,305 - CCNA_00367 0.49 -0.5 384,327 - CCNA_00367 0.51 -0.1 384,336 - CCNA_00367 0.52 +0.6 384,374 + CCNA_00367 0.56 -0.7 384,374 - CCNA_00367 0.56 -0.7 384,427 - CCNA_00367 0.61 -0.6 384,429 + CCNA_00367 0.61 +0.1 384,429 + CCNA_00367 0.61 -0.3 384,437 - CCNA_00367 0.62 +0.3 384,437 - CCNA_00367 0.62 -0.2 384,448 + CCNA_00367 0.63 +0.2 384,462 + CCNA_00367 0.65 -0.4 384,471 + CCNA_00367 0.65 +1.8 384,481 - CCNA_00367 0.66 +0.4 384,482 + CCNA_00367 0.66 -0.1 384,507 + CCNA_00367 0.69 -0.7 384,507 + CCNA_00367 0.69 -0.4 384,507 + CCNA_00367 0.69 +0.0 384,508 + CCNA_00367 0.69 +0.3 384,520 - CCNA_00367 0.70 -0.6 384,520 - CCNA_00367 0.70 +1.3 384,539 + CCNA_00367 0.72 -0.6 384,566 + CCNA_00367 0.75 +0.5 384,598 - CCNA_00367 0.78 -0.2 384,726 + +0.0 384,726 + -0.2 384,726 + +0.4 384,726 + +0.8 384,734 - -0.6 384,734 - +0.1 384,734 - +0.7 384,734 - -0.6 384,734 - +0.5 384,740 - +1.3 384,751 + +0.1 384,759 - -0.3 384,759 - -0.0 384,762 + +0.3 384,762 + -0.9 384,762 + -0.3 384,767 + +0.2 384,770 - +0.1 384,770 - -1.1 384,824 - +0.4 384,859 - +0.5 384,902 - +0.8 384,902 - -0.0 384,902 - -0.4 384,908 - -0.2 384,914 + +0.0 384,915 - CCNA_00368 0.10 +0.3 384,920 - CCNA_00368 0.11 -0.0 384,949 + CCNA_00368 0.14 +0.9 385,013 - CCNA_00368 0.22 -0.5 385,027 + CCNA_00368 0.23 -0.5 385,067 + CCNA_00368 0.28 +0.0 385,136 - CCNA_00368 0.36 -0.0 385,136 - CCNA_00368 0.36 +1.5 385,136 - CCNA_00368 0.36 -0.4 385,152 + CCNA_00368 0.38 +0.6 385,216 + CCNA_00368 0.46 -0.2 385,224 - CCNA_00368 0.47 -1.7 385,234 - CCNA_00368 0.48 -1.0 385,254 + CCNA_00368 0.51 +0.7 385,268 - CCNA_00368 0.52 -1.6 385,273 + CCNA_00368 0.53 +0.3 385,287 - CCNA_00368 0.54 -0.3 385,334 + CCNA_00368 0.60 +0.9 385,340 + CCNA_00368 0.61 -0.7 385,343 - CCNA_00368 0.61 -0.3 385,379 + CCNA_00368 0.65 -0.1 385,387 - CCNA_00368 0.66 -0.2 385,419 - CCNA_00368 0.70 -0.1 385,465 + CCNA_00368 0.76 +0.3 385,465 + CCNA_00368 0.76 -0.2 385,473 - CCNA_00368 0.77 +0.2 385,475 + CCNA_00368 0.77 -0.7 385,478 - CCNA_00368 0.77 +0.9 385,478 - CCNA_00368 0.77 +0.4 385,478 - CCNA_00368 0.77 +0.9 385,483 - CCNA_00368 0.78 +0.6 385,483 - CCNA_00368 0.78 -0.7 385,509 + CCNA_00368 0.81 +0.5 385,517 - CCNA_00368 0.82 -1.1 385,517 - CCNA_00368 0.82 +0.1 385,609 - +0.7 385,645 - +0.4 385,645 - +0.3 385,645 - +0.1 385,656 + -0.3 385,656 + +0.3 385,661 + +0.2 385,661 + +0.8 385,661 + +0.8 385,664 - -0.1 385,664 - -0.2 385,669 - +0.6 385,669 - -0.7 385,674 - -0.1 385,768 - +0.3 385,805 + +0.0 385,821 - +0.4
Or see this region's nucleotide sequence