Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00363

Experiment: PYE with CHIR-090 40 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00361 and CCNA_00362 are separated by 51 nucleotidesCCNA_00362 and CCNA_00363 are separated by 36 nucleotidesCCNA_00363 and CCNA_00364 are separated by 78 nucleotides CCNA_00361: CCNA_00361 - hot dog superfamily thioesterase, at 377,803 to 378,750 _00361 CCNA_00362: CCNA_00362 - zinc uptake regulation protein, at 378,802 to 379,287 _00362 CCNA_00363: CCNA_00363 - PAP2 bacterial acid phosphatase, at 379,324 to 380,100 _00363 CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273 _00364 Position (kb) 379 380 381Strain fitness (log2 ratio) -2 -1 0 1 2at 378.325 kb on - strand, within CCNA_00361at 378.361 kb on - strand, within CCNA_00361at 378.401 kb on + strand, within CCNA_00361at 378.453 kb on + strand, within CCNA_00361at 378.468 kb on + strand, within CCNA_00361at 378.499 kb on - strand, within CCNA_00361at 378.511 kb on - strand, within CCNA_00361at 378.520 kb on + strand, within CCNA_00361at 378.562 kb on - strand, within CCNA_00361at 378.562 kb on - strand, within CCNA_00361at 378.562 kb on - strand, within CCNA_00361at 378.577 kb on + strand, within CCNA_00361at 378.633 kb on - strand, within CCNA_00361at 378.648 kb on + strand, within CCNA_00361at 378.658 kb on + strandat 378.698 kb on - strandat 378.764 kb on - strandat 378.833 kb on - strandat 378.855 kb on + strand, within CCNA_00362at 378.855 kb on + strand, within CCNA_00362at 378.862 kb on + strand, within CCNA_00362at 378.893 kb on + strand, within CCNA_00362at 378.932 kb on - strand, within CCNA_00362at 378.980 kb on - strand, within CCNA_00362at 379.000 kb on - strand, within CCNA_00362at 379.046 kb on - strand, within CCNA_00362at 379.048 kb on + strand, within CCNA_00362at 379.104 kb on + strand, within CCNA_00362at 379.112 kb on - strand, within CCNA_00362at 379.112 kb on - strand, within CCNA_00362at 379.120 kb on - strand, within CCNA_00362at 379.169 kb on + strand, within CCNA_00362at 379.176 kb on - strand, within CCNA_00362at 379.177 kb on - strand, within CCNA_00362at 379.255 kb on - strandat 379.285 kb on - strandat 379.296 kb on - strandat 379.296 kb on - strandat 379.330 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.366 kb on - strandat 379.366 kb on - strandat 379.409 kb on + strand, within CCNA_00363at 379.436 kb on + strand, within CCNA_00363at 379.473 kb on + strand, within CCNA_00363at 379.489 kb on - strand, within CCNA_00363at 379.513 kb on + strand, within CCNA_00363at 379.513 kb on + strand, within CCNA_00363at 379.514 kb on - strand, within CCNA_00363at 379.531 kb on - strand, within CCNA_00363at 379.531 kb on - strand, within CCNA_00363at 379.544 kb on + strand, within CCNA_00363at 379.544 kb on + strand, within CCNA_00363at 379.549 kb on + strand, within CCNA_00363at 379.552 kb on - strand, within CCNA_00363at 379.561 kb on + strand, within CCNA_00363at 379.569 kb on - strand, within CCNA_00363at 379.569 kb on - strand, within CCNA_00363at 379.602 kb on + strand, within CCNA_00363at 379.616 kb on + strand, within CCNA_00363at 379.621 kb on + strand, within CCNA_00363at 379.647 kb on + strand, within CCNA_00363at 379.659 kb on + strand, within CCNA_00363at 379.664 kb on + strand, within CCNA_00363at 379.782 kb on + strand, within CCNA_00363at 379.790 kb on - strand, within CCNA_00363at 379.837 kb on + strand, within CCNA_00363at 379.854 kb on - strand, within CCNA_00363at 379.854 kb on - strand, within CCNA_00363at 379.886 kb on + strand, within CCNA_00363at 379.906 kb on - strand, within CCNA_00363at 379.950 kb on + strand, within CCNA_00363at 379.958 kb on - strand, within CCNA_00363at 380.003 kb on + strand, within CCNA_00363at 380.043 kb on + strandat 380.043 kb on + strandat 380.043 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
remove
378,325 - CCNA_00361 0.55 +0.4
378,361 - CCNA_00361 0.59 +0.8
378,401 + CCNA_00361 0.63 -0.1
378,453 + CCNA_00361 0.69 -1.3
378,468 + CCNA_00361 0.70 +0.4
378,499 - CCNA_00361 0.73 -0.4
378,511 - CCNA_00361 0.75 +0.4
378,520 + CCNA_00361 0.76 -0.1
378,562 - CCNA_00361 0.80 +0.3
378,562 - CCNA_00361 0.80 +0.6
378,562 - CCNA_00361 0.80 -0.4
378,577 + CCNA_00361 0.82 -0.7
378,633 - CCNA_00361 0.88 -0.1
378,648 + CCNA_00361 0.89 +0.6
378,658 + +0.6
378,698 - +0.0
378,764 - +0.5
378,833 - -0.7
378,855 + CCNA_00362 0.11 -0.3
378,855 + CCNA_00362 0.11 -1.3
378,862 + CCNA_00362 0.12 -1.4
378,893 + CCNA_00362 0.19 -0.8
378,932 - CCNA_00362 0.27 -0.1
378,980 - CCNA_00362 0.37 +1.0
379,000 - CCNA_00362 0.41 +0.1
379,046 - CCNA_00362 0.50 -0.2
379,048 + CCNA_00362 0.51 -0.3
379,104 + CCNA_00362 0.62 -1.2
379,112 - CCNA_00362 0.64 +1.4
379,112 - CCNA_00362 0.64 +0.1
379,120 - CCNA_00362 0.65 -0.1
379,169 + CCNA_00362 0.76 -0.5
379,176 - CCNA_00362 0.77 -0.5
379,177 - CCNA_00362 0.77 -0.1
379,255 - +0.3
379,285 - +0.3
379,296 - -0.6
379,296 - -0.1
379,330 - +0.9
379,342 - +0.1
379,342 - -0.5
379,342 - +0.3
379,342 - +1.8
379,342 - -1.4
379,342 - -0.3
379,366 - +0.1
379,366 - -0.1
379,409 + CCNA_00363 0.11 -0.2
379,436 + CCNA_00363 0.14 +0.3
379,473 + CCNA_00363 0.19 -1.2
379,489 - CCNA_00363 0.21 +0.4
379,513 + CCNA_00363 0.24 -0.9
379,513 + CCNA_00363 0.24 -0.1
379,514 - CCNA_00363 0.24 +0.9
379,531 - CCNA_00363 0.27 -0.8
379,531 - CCNA_00363 0.27 -0.0
379,544 + CCNA_00363 0.28 -0.1
379,544 + CCNA_00363 0.28 -0.1
379,549 + CCNA_00363 0.29 -1.5
379,552 - CCNA_00363 0.29 +1.2
379,561 + CCNA_00363 0.31 -0.2
379,569 - CCNA_00363 0.32 +0.1
379,569 - CCNA_00363 0.32 +0.3
379,602 + CCNA_00363 0.36 -1.0
379,616 + CCNA_00363 0.38 -0.3
379,621 + CCNA_00363 0.38 -0.5
379,647 + CCNA_00363 0.42 -0.2
379,659 + CCNA_00363 0.43 -0.8
379,664 + CCNA_00363 0.44 -0.7
379,782 + CCNA_00363 0.59 -0.7
379,790 - CCNA_00363 0.60 +0.6
379,837 + CCNA_00363 0.66 +0.3
379,854 - CCNA_00363 0.68 +1.3
379,854 - CCNA_00363 0.68 -1.4
379,886 + CCNA_00363 0.72 +0.2
379,906 - CCNA_00363 0.75 +1.0
379,950 + CCNA_00363 0.81 -1.9
379,958 - CCNA_00363 0.82 +0.6
380,003 + CCNA_00363 0.87 +0.4
380,043 + +0.6
380,043 + +0.4
380,043 + +0.2

Or see this region's nucleotide sequence