Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00194 and CCNA_00195 are separated by 141 nucleotides CCNA_00195 and CCNA_00196 overlap by 4 nucleotides CCNA_00196 and CCNA_00197 are separated by 589 nucleotides CCNA_00197 and CCNA_00198 overlap by 4 nucleotides
CCNA_00194: CCNA_00194 - Antibiotic biosynthesis monooxygenase family protein, at 208,043 to 208,345
_00194
CCNA_00195: CCNA_00195 - 3-isopropylmalate dehydratase small subunit, at 208,487 to 209,095
_00195
CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531
_00196
CCNA_00197: CCNA_00197 - LSU ribosomal protein L19P, at 211,121 to 211,522
_00197
CCNA_00198: CCNA_00198 - tRNA (guanine-N1) -methyltransferase, at 211,519 to 212,256
_00198
Position (kb) 209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.098 kb on - strand, within CCNA_00194 at 208.098 kb on - strand, within CCNA_00194 at 208.105 kb on - strand, within CCNA_00194 at 208.188 kb on + strand, within CCNA_00194 at 208.196 kb on - strand, within CCNA_00194 at 208.226 kb on + strand, within CCNA_00194 at 208.227 kb on + strand, within CCNA_00194 at 208.231 kb on + strand, within CCNA_00194 at 208.234 kb on - strand, within CCNA_00194 at 208.234 kb on - strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.260 kb on + strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.268 kb on - strand, within CCNA_00194 at 208.348 kb on - strand at 208.348 kb on - strand at 208.397 kb on + strand at 208.404 kb on + strand at 208.412 kb on - strand at 208.420 kb on + strand at 208.422 kb on + strand at 208.439 kb on - strand at 208.505 kb on - strand at 208.534 kb on + strand at 208.534 kb on + strand at 208.573 kb on + strand, within CCNA_00195 at 208.634 kb on + strand, within CCNA_00195 at 208.661 kb on - strand, within CCNA_00195 at 208.666 kb on + strand, within CCNA_00195 at 208.684 kb on - strand, within CCNA_00195 at 208.700 kb on - strand, within CCNA_00195 at 208.704 kb on + strand, within CCNA_00195 at 208.712 kb on - strand, within CCNA_00195 at 208.714 kb on + strand, within CCNA_00195 at 208.723 kb on + strand, within CCNA_00195 at 208.731 kb on - strand, within CCNA_00195 at 208.741 kb on - strand, within CCNA_00195 at 208.765 kb on - strand, within CCNA_00195 at 208.772 kb on + strand, within CCNA_00195 at 208.818 kb on + strand, within CCNA_00195 at 208.870 kb on - strand, within CCNA_00195 at 208.888 kb on + strand, within CCNA_00195 at 208.896 kb on + strand, within CCNA_00195 at 208.898 kb on + strand, within CCNA_00195 at 208.898 kb on + strand, within CCNA_00195 at 208.898 kb on + strand, within CCNA_00195 at 208.904 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.906 kb on - strand, within CCNA_00195 at 208.918 kb on + strand, within CCNA_00195 at 208.979 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.001 kb on + strand, within CCNA_00195 at 209.009 kb on - strand, within CCNA_00195 at 209.009 kb on - strand, within CCNA_00195 at 209.009 kb on - strand, within CCNA_00195 at 209.014 kb on + strand, within CCNA_00195 at 209.014 kb on + strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.022 kb on - strand, within CCNA_00195 at 209.024 kb on + strand, within CCNA_00195 at 209.024 kb on + strand, within CCNA_00195 at 209.032 kb on - strand, within CCNA_00195 at 209.032 kb on - strand, within CCNA_00195 at 209.048 kb on - strand at 209.089 kb on - strand at 209.179 kb on - strand at 209.332 kb on + strand, within CCNA_00196 at 209.367 kb on + strand, within CCNA_00196 at 209.367 kb on + strand, within CCNA_00196 at 209.368 kb on + strand, within CCNA_00196 at 209.368 kb on + strand, within CCNA_00196 at 209.382 kb on - strand, within CCNA_00196 at 209.384 kb on + strand, within CCNA_00196 at 209.384 kb on + strand, within CCNA_00196 at 209.390 kb on + strand, within CCNA_00196 at 209.390 kb on + strand, within CCNA_00196 at 209.392 kb on - strand, within CCNA_00196 at 209.392 kb on - strand, within CCNA_00196 at 209.397 kb on + strand, within CCNA_00196 at 209.398 kb on - strand, within CCNA_00196 at 209.398 kb on - strand, within CCNA_00196 at 209.484 kb on - strand, within CCNA_00196 at 209.549 kb on - strand, within CCNA_00196 at 209.558 kb on - strand, within CCNA_00196 at 209.560 kb on + strand, within CCNA_00196 at 209.560 kb on + strand, within CCNA_00196 at 209.578 kb on + strand, within CCNA_00196 at 209.578 kb on + strand, within CCNA_00196 at 209.589 kb on + strand, within CCNA_00196 at 209.694 kb on - strand, within CCNA_00196 at 209.709 kb on - strand, within CCNA_00196 at 209.709 kb on - strand, within CCNA_00196 at 209.751 kb on - strand, within CCNA_00196 at 209.755 kb on + strand, within CCNA_00196 at 209.763 kb on - strand, within CCNA_00196 at 209.763 kb on - strand, within CCNA_00196 at 209.776 kb on - strand, within CCNA_00196 at 209.788 kb on + strand, within CCNA_00196 at 209.788 kb on + strand, within CCNA_00196 at 209.793 kb on + strand, within CCNA_00196 at 209.801 kb on - strand, within CCNA_00196 at 209.801 kb on - strand, within CCNA_00196 at 209.801 kb on - strand, within CCNA_00196 at 209.814 kb on - strand, within CCNA_00196 at 209.820 kb on - strand, within CCNA_00196 at 209.841 kb on - strand, within CCNA_00196 at 209.845 kb on + strand, within CCNA_00196 at 209.858 kb on + strand, within CCNA_00196 at 209.859 kb on + strand, within CCNA_00196 at 209.866 kb on - strand, within CCNA_00196 at 209.868 kb on + strand, within CCNA_00196 at 209.868 kb on - strand, within CCNA_00196 at 209.876 kb on - strand, within CCNA_00196 at 209.900 kb on - strand, within CCNA_00196 at 210.003 kb on + strand, within CCNA_00196 at 210.029 kb on + strand, within CCNA_00196 at 210.029 kb on + strand, within CCNA_00196 at 210.040 kb on + strand, within CCNA_00196 at 210.051 kb on + strand, within CCNA_00196 at 210.051 kb on + strand, within CCNA_00196 at 210.051 kb on + strand, within CCNA_00196 at 210.052 kb on + strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.059 kb on - strand, within CCNA_00196 at 210.062 kb on + strand, within CCNA_00196 at 210.062 kb on + strand, within CCNA_00196 at 210.100 kb on + strand, within CCNA_00196 at 210.123 kb on + strand, within CCNA_00196 at 210.125 kb on + strand, within CCNA_00196 at 210.162 kb on - strand, within CCNA_00196 at 210.175 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.180 kb on + strand, within CCNA_00196 at 210.193 kb on - strand, within CCNA_00196 at 210.214 kb on - strand, within CCNA_00196 at 210.318 kb on + strand, within CCNA_00196 at 210.319 kb on + strand, within CCNA_00196 at 210.322 kb on - strand, within CCNA_00196 at 210.327 kb on - strand, within CCNA_00196 at 210.358 kb on - strand, within CCNA_00196 at 210.369 kb on - strand, within CCNA_00196 at 210.374 kb on - strand, within CCNA_00196 at 210.381 kb on + strand, within CCNA_00196 at 210.381 kb on + strand, within CCNA_00196 at 210.412 kb on + strand at 210.414 kb on + strand at 210.420 kb on - strand at 210.429 kb on + strand at 210.437 kb on - strand at 210.442 kb on + strand at 210.455 kb on - strand at 210.460 kb on - strand at 210.505 kb on - strand at 210.505 kb on - strand at 210.505 kb on - strand at 210.640 kb on - strand at 210.662 kb on - strand at 210.709 kb on + strand at 210.717 kb on - strand at 210.717 kb on - strand at 210.748 kb on - strand at 210.838 kb on + strand at 210.849 kb on + strand at 210.854 kb on + strand at 210.859 kb on + strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.867 kb on - strand at 210.912 kb on + strand at 210.912 kb on + strand at 210.913 kb on + strand at 210.973 kb on + strand at 210.981 kb on - strand at 211.001 kb on + strand at 211.002 kb on + strand at 211.031 kb on + strand at 211.089 kb on - strand at 211.118 kb on + strand at 211.118 kb on + strand at 211.119 kb on - strand at 211.126 kb on - strand at 211.191 kb on - strand, within CCNA_00197 at 211.211 kb on - strand, within CCNA_00197
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 208,098 - CCNA_00194 0.18 +0.2 208,098 - CCNA_00194 0.18 +1.0 208,105 - CCNA_00194 0.20 -0.0 208,188 + CCNA_00194 0.48 +0.6 208,196 - CCNA_00194 0.50 +0.1 208,226 + CCNA_00194 0.60 +0.5 208,227 + CCNA_00194 0.61 +0.0 208,231 + CCNA_00194 0.62 -1.5 208,234 - CCNA_00194 0.63 -0.0 208,234 - CCNA_00194 0.63 -1.1 208,260 + CCNA_00194 0.72 -0.2 208,260 + CCNA_00194 0.72 -0.1 208,260 + CCNA_00194 0.72 -0.2 208,260 + CCNA_00194 0.72 -0.3 208,260 + CCNA_00194 0.72 +0.6 208,268 - CCNA_00194 0.74 +0.2 208,268 - CCNA_00194 0.74 -0.9 208,268 - CCNA_00194 0.74 -0.0 208,268 - CCNA_00194 0.74 +0.4 208,348 - -0.1 208,348 - +0.2 208,397 + +0.7 208,404 + +0.0 208,412 - +0.8 208,420 + -1.0 208,422 + +0.7 208,439 - -0.3 208,505 - +0.0 208,534 + +0.2 208,534 + +0.1 208,573 + CCNA_00195 0.14 -0.5 208,634 + CCNA_00195 0.24 +0.1 208,661 - CCNA_00195 0.29 +0.6 208,666 + CCNA_00195 0.29 -0.9 208,684 - CCNA_00195 0.32 +0.7 208,700 - CCNA_00195 0.35 -0.0 208,704 + CCNA_00195 0.36 +0.9 208,712 - CCNA_00195 0.37 -1.9 208,714 + CCNA_00195 0.37 -1.4 208,723 + CCNA_00195 0.39 -0.0 208,731 - CCNA_00195 0.40 +0.5 208,741 - CCNA_00195 0.42 -0.6 208,765 - CCNA_00195 0.46 -0.1 208,772 + CCNA_00195 0.47 +0.5 208,818 + CCNA_00195 0.54 +2.3 208,870 - CCNA_00195 0.63 -0.3 208,888 + CCNA_00195 0.66 -0.6 208,896 + CCNA_00195 0.67 -0.7 208,898 + CCNA_00195 0.67 -0.7 208,898 + CCNA_00195 0.67 -1.3 208,898 + CCNA_00195 0.67 -0.4 208,904 - CCNA_00195 0.68 +0.6 208,906 - CCNA_00195 0.69 -0.3 208,906 - CCNA_00195 0.69 -0.5 208,906 - CCNA_00195 0.69 -0.5 208,906 - CCNA_00195 0.69 +0.2 208,906 - CCNA_00195 0.69 -1.0 208,918 + CCNA_00195 0.71 -0.8 208,979 + CCNA_00195 0.81 -0.2 209,001 + CCNA_00195 0.84 -1.6 209,001 + CCNA_00195 0.84 +0.0 209,001 + CCNA_00195 0.84 -0.2 209,001 + CCNA_00195 0.84 -0.1 209,001 + CCNA_00195 0.84 +0.4 209,001 + CCNA_00195 0.84 +0.1 209,001 + CCNA_00195 0.84 -0.6 209,001 + CCNA_00195 0.84 -1.7 209,009 - CCNA_00195 0.86 -0.4 209,009 - CCNA_00195 0.86 +0.8 209,009 - CCNA_00195 0.86 +0.5 209,014 + CCNA_00195 0.87 +0.9 209,014 + CCNA_00195 0.87 -0.5 209,022 - CCNA_00195 0.88 +0.1 209,022 - CCNA_00195 0.88 -1.0 209,022 - CCNA_00195 0.88 -1.1 209,022 - CCNA_00195 0.88 -0.6 209,022 - CCNA_00195 0.88 -0.1 209,024 + CCNA_00195 0.88 -0.4 209,024 + CCNA_00195 0.88 +0.2 209,032 - CCNA_00195 0.89 -1.6 209,032 - CCNA_00195 0.89 +0.2 209,048 - -2.0 209,089 - -0.8 209,179 - +1.3 209,332 + CCNA_00196 0.17 +0.0 209,367 + CCNA_00196 0.19 +0.9 209,367 + CCNA_00196 0.19 -0.9 209,368 + CCNA_00196 0.19 -0.9 209,368 + CCNA_00196 0.19 -0.7 209,382 - CCNA_00196 0.20 -1.1 209,384 + CCNA_00196 0.20 -0.5 209,384 + CCNA_00196 0.20 -0.3 209,390 + CCNA_00196 0.21 -0.4 209,390 + CCNA_00196 0.21 -0.2 209,392 - CCNA_00196 0.21 -0.3 209,392 - CCNA_00196 0.21 -1.6 209,397 + CCNA_00196 0.21 +0.6 209,398 - CCNA_00196 0.21 +0.6 209,398 - CCNA_00196 0.21 +0.5 209,484 - CCNA_00196 0.27 +0.1 209,549 - CCNA_00196 0.32 +0.6 209,558 - CCNA_00196 0.32 -0.3 209,560 + CCNA_00196 0.33 -0.1 209,560 + CCNA_00196 0.33 -0.6 209,578 + CCNA_00196 0.34 -0.5 209,578 + CCNA_00196 0.34 +0.6 209,589 + CCNA_00196 0.35 -0.6 209,694 - CCNA_00196 0.42 -0.5 209,709 - CCNA_00196 0.43 +1.6 209,709 - CCNA_00196 0.43 +0.3 209,751 - CCNA_00196 0.46 +0.8 209,755 + CCNA_00196 0.46 +0.4 209,763 - CCNA_00196 0.47 +0.8 209,763 - CCNA_00196 0.47 +0.2 209,776 - CCNA_00196 0.47 +0.6 209,788 + CCNA_00196 0.48 -0.6 209,788 + CCNA_00196 0.48 -0.5 209,793 + CCNA_00196 0.49 +1.0 209,801 - CCNA_00196 0.49 -0.9 209,801 - CCNA_00196 0.49 -0.4 209,801 - CCNA_00196 0.49 +1.2 209,814 - CCNA_00196 0.50 +0.2 209,820 - CCNA_00196 0.51 -0.3 209,841 - CCNA_00196 0.52 -0.7 209,845 + CCNA_00196 0.52 +0.4 209,858 + CCNA_00196 0.53 -0.8 209,859 + CCNA_00196 0.53 +0.1 209,866 - CCNA_00196 0.54 +0.8 209,868 + CCNA_00196 0.54 +1.2 209,868 - CCNA_00196 0.54 -0.3 209,876 - CCNA_00196 0.54 +0.1 209,900 - CCNA_00196 0.56 -0.6 210,003 + CCNA_00196 0.63 +0.2 210,029 + CCNA_00196 0.65 +0.2 210,029 + CCNA_00196 0.65 +0.2 210,040 + CCNA_00196 0.66 -0.1 210,051 + CCNA_00196 0.67 -0.1 210,051 + CCNA_00196 0.67 +0.4 210,051 + CCNA_00196 0.67 +0.2 210,052 + CCNA_00196 0.67 +0.7 210,059 - CCNA_00196 0.67 -0.5 210,059 - CCNA_00196 0.67 -0.1 210,059 - CCNA_00196 0.67 +0.7 210,059 - CCNA_00196 0.67 -0.4 210,062 + CCNA_00196 0.67 +0.2 210,062 + CCNA_00196 0.67 -2.3 210,100 + CCNA_00196 0.70 +0.1 210,123 + CCNA_00196 0.72 +0.3 210,125 + CCNA_00196 0.72 +0.1 210,162 - CCNA_00196 0.74 +0.2 210,175 + CCNA_00196 0.75 -0.2 210,180 + CCNA_00196 0.76 -0.5 210,180 + CCNA_00196 0.76 +0.8 210,180 + CCNA_00196 0.76 +0.2 210,193 - CCNA_00196 0.76 -0.9 210,214 - CCNA_00196 0.78 +0.4 210,318 + CCNA_00196 0.85 -0.5 210,319 + CCNA_00196 0.85 +0.3 210,322 - CCNA_00196 0.85 -0.3 210,327 - CCNA_00196 0.86 -0.5 210,358 - CCNA_00196 0.88 +0.7 210,369 - CCNA_00196 0.89 -0.3 210,374 - CCNA_00196 0.89 -0.1 210,381 + CCNA_00196 0.90 -0.0 210,381 + CCNA_00196 0.90 -0.2 210,412 + +0.1 210,414 + -1.2 210,420 - +0.5 210,429 + +0.3 210,437 - -0.2 210,442 + -0.2 210,455 - -0.6 210,460 - +0.5 210,505 - +0.4 210,505 - -0.4 210,505 - +1.2 210,640 - +0.0 210,662 - -0.2 210,709 + -0.4 210,717 - +0.3 210,717 - +0.1 210,748 - +0.3 210,838 + +0.3 210,849 + -0.4 210,854 + -0.4 210,859 + -1.1 210,867 - -1.9 210,867 - -0.5 210,867 - -1.3 210,867 - +0.9 210,912 + +0.0 210,912 + +0.4 210,913 + +0.3 210,973 + +0.6 210,981 - -0.3 211,001 + +1.0 211,002 + +0.6 211,031 + -0.0 211,089 - +0.8 211,118 + -2.2 211,118 + +0.2 211,119 - +0.4 211,126 - +0.4 211,191 - CCNA_00197 0.17 -0.1 211,211 - CCNA_00197 0.22 -0.7
Or see this region's nucleotide sequence