Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00179

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00176 and CCNA_00177 overlap by 32 nucleotidesCCNA_00177 and CCNA_00178 overlap by 4 nucleotidesCCNA_00178 and CCNA_00179 overlap by 4 nucleotidesCCNA_00179 and CCNA_00180 overlap by 19 nucleotides CCNA_00176: CCNA_00176 - type II secretion pathway protein H, at 191,399 to 191,956 _00176 CCNA_00177: CCNA_00177 - type II secretion pathway protein I, at 191,925 to 192,308 _00177 CCNA_00178: CCNA_00178 - type II secretion pathway protein J, at 192,305 to 192,895 _00178 CCNA_00179: CCNA_00179 - type II secretion pathway protein K, at 192,892 to 193,866 _00179 CCNA_00180: CCNA_00180 - type II secretion pathway protein L, at 193,848 to 194,954 _00180 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2at 191.962 kb on + strandat 191.969 kb on - strand, within CCNA_00177at 191.984 kb on + strand, within CCNA_00177at 192.007 kb on - strand, within CCNA_00177at 192.020 kb on - strand, within CCNA_00177at 192.023 kb on + strand, within CCNA_00177at 192.023 kb on + strand, within CCNA_00177at 192.070 kb on + strand, within CCNA_00177at 192.090 kb on + strand, within CCNA_00177at 192.098 kb on - strand, within CCNA_00177at 192.108 kb on + strand, within CCNA_00177at 192.138 kb on + strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.146 kb on - strand, within CCNA_00177at 192.195 kb on + strand, within CCNA_00177at 192.200 kb on + strand, within CCNA_00177at 192.203 kb on - strand, within CCNA_00177at 192.243 kb on + strand, within CCNA_00177at 192.251 kb on - strand, within CCNA_00177at 192.252 kb on - strand, within CCNA_00177at 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.290 kb on + strandat 192.298 kb on - strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.312 kb on + strandat 192.320 kb on - strandat 192.330 kb on - strandat 192.356 kb on - strandat 192.358 kb on + strandat 192.358 kb on + strandat 192.366 kb on - strand, within CCNA_00178at 192.366 kb on - strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.387 kb on + strand, within CCNA_00178at 192.395 kb on - strand, within CCNA_00178at 192.426 kb on - strand, within CCNA_00178at 192.570 kb on - strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.579 kb on + strand, within CCNA_00178at 192.587 kb on - strand, within CCNA_00178at 192.594 kb on + strand, within CCNA_00178at 192.594 kb on + strand, within CCNA_00178at 192.621 kb on - strand, within CCNA_00178at 192.642 kb on + strand, within CCNA_00178at 192.650 kb on - strand, within CCNA_00178at 192.680 kb on + strand, within CCNA_00178at 192.686 kb on + strand, within CCNA_00178at 192.694 kb on - strand, within CCNA_00178at 192.696 kb on + strand, within CCNA_00178at 192.703 kb on + strand, within CCNA_00178at 192.719 kb on + strand, within CCNA_00178at 192.768 kb on + strand, within CCNA_00178at 192.768 kb on + strand, within CCNA_00178at 192.784 kb on - strand, within CCNA_00178at 192.804 kb on - strand, within CCNA_00178at 192.817 kb on - strand, within CCNA_00178at 192.819 kb on - strand, within CCNA_00178at 192.831 kb on + strand, within CCNA_00178at 192.873 kb on - strandat 192.876 kb on + strandat 192.876 kb on + strandat 192.876 kb on + strandat 192.895 kb on - strandat 192.919 kb on + strandat 192.959 kb on - strandat 193.022 kb on + strand, within CCNA_00179at 193.028 kb on + strand, within CCNA_00179at 193.030 kb on - strand, within CCNA_00179at 193.104 kb on + strand, within CCNA_00179at 193.104 kb on + strand, within CCNA_00179at 193.112 kb on - strand, within CCNA_00179at 193.112 kb on - strand, within CCNA_00179at 193.159 kb on + strand, within CCNA_00179at 193.207 kb on + strand, within CCNA_00179at 193.210 kb on - strand, within CCNA_00179at 193.215 kb on - strand, within CCNA_00179at 193.234 kb on - strand, within CCNA_00179at 193.275 kb on + strand, within CCNA_00179at 193.282 kb on + strand, within CCNA_00179at 193.283 kb on - strand, within CCNA_00179at 193.290 kb on - strand, within CCNA_00179at 193.303 kb on + strand, within CCNA_00179at 193.313 kb on + strand, within CCNA_00179at 193.321 kb on - strand, within CCNA_00179at 193.360 kb on - strand, within CCNA_00179at 193.391 kb on + strand, within CCNA_00179at 193.410 kb on - strand, within CCNA_00179at 193.410 kb on - strand, within CCNA_00179at 193.430 kb on - strand, within CCNA_00179at 193.479 kb on + strand, within CCNA_00179at 193.487 kb on - strand, within CCNA_00179at 193.496 kb on + strand, within CCNA_00179at 193.504 kb on - strand, within CCNA_00179at 193.516 kb on - strand, within CCNA_00179at 193.542 kb on + strand, within CCNA_00179at 193.542 kb on + strand, within CCNA_00179at 193.550 kb on - strand, within CCNA_00179at 193.582 kb on + strand, within CCNA_00179at 193.624 kb on + strand, within CCNA_00179at 193.624 kb on + strand, within CCNA_00179at 193.650 kb on - strand, within CCNA_00179at 193.669 kb on - strand, within CCNA_00179at 193.704 kb on + strand, within CCNA_00179at 193.706 kb on + strand, within CCNA_00179at 193.714 kb on - strand, within CCNA_00179at 193.720 kb on + strand, within CCNA_00179at 193.796 kb on - strandat 193.796 kb on - strandat 193.826 kb on + strandat 193.830 kb on + strandat 193.866 kb on + strandat 193.876 kb on + strandat 193.878 kb on + strandat 193.878 kb on + strandat 193.878 kb on + strandat 193.925 kb on + strandat 193.927 kb on + strandat 193.939 kb on + strandat 193.982 kb on + strand, within CCNA_00180at 194.040 kb on - strand, within CCNA_00180at 194.051 kb on - strand, within CCNA_00180at 194.071 kb on - strand, within CCNA_00180at 194.098 kb on + strand, within CCNA_00180at 194.098 kb on + strand, within CCNA_00180at 194.098 kb on + strand, within CCNA_00180at 194.098 kb on + strand, within CCNA_00180at 194.110 kb on + strand, within CCNA_00180at 194.118 kb on + strand, within CCNA_00180at 194.123 kb on + strand, within CCNA_00180at 194.168 kb on + strand, within CCNA_00180at 194.169 kb on - strand, within CCNA_00180at 194.178 kb on + strand, within CCNA_00180at 194.186 kb on - strand, within CCNA_00180at 194.186 kb on - strand, within CCNA_00180at 194.190 kb on + strand, within CCNA_00180at 194.190 kb on + strand, within CCNA_00180at 194.190 kb on + strand, within CCNA_00180at 194.195 kb on + strand, within CCNA_00180at 194.200 kb on + strand, within CCNA_00180at 194.200 kb on + strand, within CCNA_00180at 194.205 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.211 kb on + strand, within CCNA_00180at 194.212 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.219 kb on - strand, within CCNA_00180at 194.226 kb on - strand, within CCNA_00180at 194.243 kb on + strand, within CCNA_00180at 194.344 kb on + strand, within CCNA_00180at 194.431 kb on - strand, within CCNA_00180at 194.431 kb on - strand, within CCNA_00180at 194.431 kb on - strand, within CCNA_00180at 194.494 kb on + strand, within CCNA_00180at 194.503 kb on - strand, within CCNA_00180at 194.540 kb on + strand, within CCNA_00180at 194.540 kb on + strand, within CCNA_00180at 194.540 kb on + strand, within CCNA_00180at 194.548 kb on - strand, within CCNA_00180at 194.560 kb on + strand, within CCNA_00180at 194.678 kb on + strand, within CCNA_00180at 194.697 kb on + strand, within CCNA_00180at 194.711 kb on + strand, within CCNA_00180at 194.719 kb on - strand, within CCNA_00180at 194.734 kb on + strand, within CCNA_00180at 194.741 kb on + strand, within CCNA_00180at 194.769 kb on + strand, within CCNA_00180at 194.769 kb on + strand, within CCNA_00180at 194.769 kb on + strand, within CCNA_00180at 194.779 kb on + strand, within CCNA_00180at 194.784 kb on + strand, within CCNA_00180at 194.786 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.787 kb on - strand, within CCNA_00180at 194.791 kb on - strand, within CCNA_00180at 194.831 kb on + strand, within CCNA_00180

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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191,962 + -0.6
191,969 - CCNA_00177 0.11 -1.0
191,984 + CCNA_00177 0.15 +0.0
192,007 - CCNA_00177 0.21 -0.5
192,020 - CCNA_00177 0.25 -0.6
192,023 + CCNA_00177 0.26 -0.3
192,023 + CCNA_00177 0.26 -0.4
192,070 + CCNA_00177 0.38 -0.1
192,090 + CCNA_00177 0.43 -0.9
192,098 - CCNA_00177 0.45 +0.1
192,108 + CCNA_00177 0.48 -0.3
192,138 + CCNA_00177 0.55 -0.7
192,146 - CCNA_00177 0.58 -0.1
192,146 - CCNA_00177 0.58 +0.5
192,195 + CCNA_00177 0.70 +0.1
192,200 + CCNA_00177 0.72 +0.0
192,203 - CCNA_00177 0.72 -1.0
192,243 + CCNA_00177 0.83 +0.3
192,251 - CCNA_00177 0.85 +0.4
192,252 - CCNA_00177 0.85 +1.3
192,290 + -0.1
192,290 + +0.5
192,290 + -0.3
192,290 + -1.6
192,290 + -0.3
192,290 + -1.8
192,290 + -0.8
192,290 + -0.1
192,290 + -0.1
192,298 - -0.6
192,312 + +0.8
192,312 + +0.5
192,312 + +0.2
192,312 + -0.0
192,320 - -0.1
192,330 - -0.0
192,356 - -0.7
192,358 + +0.6
192,358 + +1.2
192,366 - CCNA_00178 0.10 -0.4
192,366 - CCNA_00178 0.10 -0.7
192,387 + CCNA_00178 0.14 -0.3
192,387 + CCNA_00178 0.14 -0.9
192,387 + CCNA_00178 0.14 -0.8
192,395 - CCNA_00178 0.15 +0.2
192,426 - CCNA_00178 0.20 -0.1
192,570 - CCNA_00178 0.45 -1.1
192,579 + CCNA_00178 0.46 -0.4
192,579 + CCNA_00178 0.46 -1.4
192,587 - CCNA_00178 0.48 -0.4
192,594 + CCNA_00178 0.49 -0.2
192,594 + CCNA_00178 0.49 +0.1
192,621 - CCNA_00178 0.53 -0.9
192,642 + CCNA_00178 0.57 +0.3
192,650 - CCNA_00178 0.58 +0.1
192,680 + CCNA_00178 0.63 -0.8
192,686 + CCNA_00178 0.64 -0.7
192,694 - CCNA_00178 0.66 -1.0
192,696 + CCNA_00178 0.66 +0.4
192,703 + CCNA_00178 0.67 -0.8
192,719 + CCNA_00178 0.70 -0.8
192,768 + CCNA_00178 0.78 +0.0
192,768 + CCNA_00178 0.78 +1.3
192,784 - CCNA_00178 0.81 -0.8
192,804 - CCNA_00178 0.84 -0.5
192,817 - CCNA_00178 0.87 -1.7
192,819 - CCNA_00178 0.87 +0.0
192,831 + CCNA_00178 0.89 -1.8
192,873 - -1.2
192,876 + -0.1
192,876 + -0.3
192,876 + +0.8
192,895 - -0.8
192,919 + -0.7
192,959 - -1.1
193,022 + CCNA_00179 0.13 +0.8
193,028 + CCNA_00179 0.14 +0.3
193,030 - CCNA_00179 0.14 -0.0
193,104 + CCNA_00179 0.22 +0.9
193,104 + CCNA_00179 0.22 -0.4
193,112 - CCNA_00179 0.23 -2.7
193,112 - CCNA_00179 0.23 -0.8
193,159 + CCNA_00179 0.27 +0.9
193,207 + CCNA_00179 0.32 -0.7
193,210 - CCNA_00179 0.33 +0.2
193,215 - CCNA_00179 0.33 +0.5
193,234 - CCNA_00179 0.35 -0.5
193,275 + CCNA_00179 0.39 -0.6
193,282 + CCNA_00179 0.40 +0.4
193,283 - CCNA_00179 0.40 -1.9
193,290 - CCNA_00179 0.41 -0.6
193,303 + CCNA_00179 0.42 -0.4
193,313 + CCNA_00179 0.43 -0.4
193,321 - CCNA_00179 0.44 -1.2
193,360 - CCNA_00179 0.48 -1.6
193,391 + CCNA_00179 0.51 -1.2
193,410 - CCNA_00179 0.53 +0.4
193,410 - CCNA_00179 0.53 -0.8
193,430 - CCNA_00179 0.55 -0.3
193,479 + CCNA_00179 0.60 -0.6
193,487 - CCNA_00179 0.61 -0.0
193,496 + CCNA_00179 0.62 -1.0
193,504 - CCNA_00179 0.63 +0.1
193,516 - CCNA_00179 0.64 -0.4
193,542 + CCNA_00179 0.67 -0.7
193,542 + CCNA_00179 0.67 -1.0
193,550 - CCNA_00179 0.67 -1.7
193,582 + CCNA_00179 0.71 -0.4
193,624 + CCNA_00179 0.75 -0.3
193,624 + CCNA_00179 0.75 -0.2
193,650 - CCNA_00179 0.78 -1.0
193,669 - CCNA_00179 0.80 -0.8
193,704 + CCNA_00179 0.83 +0.1
193,706 + CCNA_00179 0.83 -1.0
193,714 - CCNA_00179 0.84 +1.0
193,720 + CCNA_00179 0.85 +0.0
193,796 - -0.3
193,796 - +0.8
193,826 + -0.9
193,830 + +1.0
193,866 + -0.3
193,876 + +0.3
193,878 + +0.0
193,878 + -0.5
193,878 + +0.6
193,925 + +0.3
193,927 + +0.3
193,939 + -0.5
193,982 + CCNA_00180 0.12 +0.4
194,040 - CCNA_00180 0.17 -1.2
194,051 - CCNA_00180 0.18 -0.1
194,071 - CCNA_00180 0.20 -0.4
194,098 + CCNA_00180 0.23 +1.2
194,098 + CCNA_00180 0.23 +0.4
194,098 + CCNA_00180 0.23 -0.3
194,098 + CCNA_00180 0.23 +0.6
194,110 + CCNA_00180 0.24 +0.4
194,118 + CCNA_00180 0.24 +0.8
194,123 + CCNA_00180 0.25 -1.6
194,168 + CCNA_00180 0.29 +0.3
194,169 - CCNA_00180 0.29 -1.2
194,178 + CCNA_00180 0.30 -1.1
194,186 - CCNA_00180 0.31 -0.4
194,186 - CCNA_00180 0.31 -0.2
194,190 + CCNA_00180 0.31 +0.1
194,190 + CCNA_00180 0.31 -0.7
194,190 + CCNA_00180 0.31 +0.6
194,195 + CCNA_00180 0.31 +0.6
194,200 + CCNA_00180 0.32 -0.3
194,200 + CCNA_00180 0.32 +0.0
194,205 + CCNA_00180 0.32 -0.1
194,211 + CCNA_00180 0.33 -0.1
194,211 + CCNA_00180 0.33 -1.4
194,211 + CCNA_00180 0.33 -1.8
194,211 + CCNA_00180 0.33 -1.0
194,211 + CCNA_00180 0.33 +0.3
194,212 - CCNA_00180 0.33 +0.9
194,219 - CCNA_00180 0.34 -1.3
194,219 - CCNA_00180 0.34 +0.8
194,226 - CCNA_00180 0.34 -0.0
194,243 + CCNA_00180 0.36 +0.4
194,344 + CCNA_00180 0.45 +0.8
194,431 - CCNA_00180 0.53 +0.4
194,431 - CCNA_00180 0.53 -0.2
194,431 - CCNA_00180 0.53 +0.6
194,494 + CCNA_00180 0.58 -0.1
194,503 - CCNA_00180 0.59 +0.2
194,540 + CCNA_00180 0.63 -0.1
194,540 + CCNA_00180 0.63 +0.5
194,540 + CCNA_00180 0.63 +1.2
194,548 - CCNA_00180 0.63 -0.8
194,560 + CCNA_00180 0.64 +0.2
194,678 + CCNA_00180 0.75 -0.4
194,697 + CCNA_00180 0.77 +0.8
194,711 + CCNA_00180 0.78 +0.2
194,719 - CCNA_00180 0.79 +0.2
194,734 + CCNA_00180 0.80 -0.3
194,741 + CCNA_00180 0.81 +2.0
194,769 + CCNA_00180 0.83 -1.4
194,769 + CCNA_00180 0.83 +0.1
194,769 + CCNA_00180 0.83 -0.7
194,779 + CCNA_00180 0.84 +0.3
194,784 + CCNA_00180 0.85 +0.2
194,786 - CCNA_00180 0.85 -1.5
194,787 - CCNA_00180 0.85 -1.8
194,787 - CCNA_00180 0.85 -1.2
194,791 - CCNA_00180 0.85 -0.7
194,831 + CCNA_00180 0.89 -0.1

Or see this region's nucleotide sequence