Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00164

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00163 and CCNA_00164 overlap by 11 nucleotidesCCNA_00164 and CCNA_00165 overlap by 7 nucleotidesCCNA_00165 and CCNA_03915 are separated by 198 nucleotides CCNA_00163: CCNA_00163 - exopolysaccharide transport family protein, at 172,964 to 175,183 _00163 CCNA_00164: CCNA_00164 - O-antigen polymerase, at 175,173 to 177,098 _00164 CCNA_00165: CCNA_00165 - polyisoprenylphosphate hexose-1-phosphotransferase pssY, at 177,092 to 177,745 _00165 CCNA_03915: CCNA_03915 - hypothetical protein, at 177,944 to 178,090 _03915 Position (kb) 175 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 174.189 kb on - strand, within CCNA_00163at 174.219 kb on - strand, within CCNA_00163at 174.228 kb on + strand, within CCNA_00163at 174.235 kb on - strand, within CCNA_00163at 174.269 kb on + strand, within CCNA_00163at 174.296 kb on - strand, within CCNA_00163at 174.306 kb on + strand, within CCNA_00163at 174.314 kb on - strand, within CCNA_00163at 174.317 kb on + strand, within CCNA_00163at 174.322 kb on + strand, within CCNA_00163at 174.330 kb on - strand, within CCNA_00163at 174.375 kb on - strand, within CCNA_00163at 174.394 kb on + strand, within CCNA_00163at 174.401 kb on + strand, within CCNA_00163at 174.416 kb on + strand, within CCNA_00163at 174.421 kb on + strand, within CCNA_00163at 174.424 kb on - strand, within CCNA_00163at 174.435 kb on - strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.437 kb on + strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.445 kb on - strand, within CCNA_00163at 174.455 kb on + strand, within CCNA_00163at 174.463 kb on - strand, within CCNA_00163at 174.463 kb on - strand, within CCNA_00163at 174.474 kb on - strand, within CCNA_00163at 174.475 kb on + strand, within CCNA_00163at 174.508 kb on + strand, within CCNA_00163at 174.645 kb on + strand, within CCNA_00163at 174.651 kb on - strand, within CCNA_00163at 174.668 kb on - strand, within CCNA_00163at 174.683 kb on - strand, within CCNA_00163at 174.757 kb on + strand, within CCNA_00163at 174.757 kb on + strand, within CCNA_00163at 174.765 kb on - strand, within CCNA_00163at 174.783 kb on + strand, within CCNA_00163at 174.818 kb on + strand, within CCNA_00163at 174.826 kb on - strand, within CCNA_00163at 174.934 kb on - strand, within CCNA_00163at 174.963 kb on + strandat 175.024 kb on + strandat 175.024 kb on + strandat 175.051 kb on - strandat 175.054 kb on + strandat 175.062 kb on - strandat 175.068 kb on - strandat 175.089 kb on + strandat 175.111 kb on - strandat 175.198 kb on - strandat 175.260 kb on + strandat 175.387 kb on - strand, within CCNA_00164at 175.433 kb on + strand, within CCNA_00164at 175.453 kb on - strand, within CCNA_00164at 175.453 kb on - strand, within CCNA_00164at 175.478 kb on + strand, within CCNA_00164at 175.478 kb on + strand, within CCNA_00164at 175.478 kb on + strand, within CCNA_00164at 175.483 kb on + strand, within CCNA_00164at 175.507 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.649 kb on + strand, within CCNA_00164at 175.653 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.657 kb on - strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.686 kb on + strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.694 kb on - strand, within CCNA_00164at 175.703 kb on + strand, within CCNA_00164at 175.740 kb on + strand, within CCNA_00164at 175.748 kb on - strand, within CCNA_00164at 175.761 kb on - strand, within CCNA_00164at 175.766 kb on - strand, within CCNA_00164at 175.767 kb on + strand, within CCNA_00164at 175.910 kb on + strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.918 kb on - strand, within CCNA_00164at 175.975 kb on + strand, within CCNA_00164at 175.985 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.991 kb on + strand, within CCNA_00164at 175.993 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 175.999 kb on - strand, within CCNA_00164at 176.006 kb on + strand, within CCNA_00164at 176.010 kb on + strand, within CCNA_00164at 176.031 kb on + strand, within CCNA_00164at 176.063 kb on + strand, within CCNA_00164at 176.076 kb on - strand, within CCNA_00164at 176.083 kb on - strand, within CCNA_00164at 176.121 kb on + strand, within CCNA_00164at 176.224 kb on - strand, within CCNA_00164at 176.243 kb on + strand, within CCNA_00164at 176.250 kb on - strand, within CCNA_00164at 176.289 kb on - strand, within CCNA_00164at 176.312 kb on + strand, within CCNA_00164at 176.320 kb on - strand, within CCNA_00164at 176.348 kb on + strand, within CCNA_00164at 176.378 kb on - strand, within CCNA_00164at 176.383 kb on - strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.385 kb on + strand, within CCNA_00164at 176.393 kb on - strand, within CCNA_00164at 176.393 kb on - strand, within CCNA_00164at 176.406 kb on + strand, within CCNA_00164at 176.426 kb on + strand, within CCNA_00164at 176.426 kb on + strand, within CCNA_00164at 176.445 kb on - strand, within CCNA_00164at 176.488 kb on + strand, within CCNA_00164at 176.496 kb on - strand, within CCNA_00164at 176.501 kb on + strand, within CCNA_00164at 176.506 kb on + strand, within CCNA_00164at 176.509 kb on - strand, within CCNA_00164at 176.550 kb on + strand, within CCNA_00164at 176.571 kb on + strand, within CCNA_00164at 176.596 kb on - strand, within CCNA_00164at 176.636 kb on - strand, within CCNA_00164at 176.636 kb on - strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.638 kb on - strand, within CCNA_00164at 176.640 kb on + strand, within CCNA_00164at 176.680 kb on + strand, within CCNA_00164at 176.754 kb on + strand, within CCNA_00164at 176.817 kb on + strand, within CCNA_00164at 176.838 kb on + strand, within CCNA_00164at 176.849 kb on + strand, within CCNA_00164at 176.852 kb on - strand, within CCNA_00164at 176.913 kb on - strandat 176.939 kb on + strandat 177.006 kb on + strandat 177.007 kb on - strandat 177.014 kb on - strandat 177.019 kb on - strandat 177.026 kb on + strandat 177.040 kb on + strandat 177.040 kb on + strandat 177.087 kb on + strandat 177.127 kb on - strandat 177.127 kb on - strandat 177.141 kb on + strandat 177.141 kb on + strandat 177.149 kb on - strandat 177.153 kb on + strandat 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.167 kb on + strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.175 kb on - strand, within CCNA_00165at 177.233 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.240 kb on + strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.248 kb on - strand, within CCNA_00165at 177.250 kb on + strand, within CCNA_00165at 177.255 kb on + strand, within CCNA_00165at 177.258 kb on - strand, within CCNA_00165at 177.263 kb on - strand, within CCNA_00165at 177.273 kb on - strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.314 kb on + strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.386 kb on - strand, within CCNA_00165at 177.464 kb on - strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.480 kb on - strand, within CCNA_00165at 177.481 kb on - strand, within CCNA_00165at 177.484 kb on + strand, within CCNA_00165at 177.492 kb on - strand, within CCNA_00165at 177.528 kb on + strand, within CCNA_00165at 177.533 kb on + strand, within CCNA_00165at 177.536 kb on - strand, within CCNA_00165at 177.645 kb on - strand, within CCNA_00165at 177.660 kb on - strand, within CCNA_00165at 177.660 kb on - strand, within CCNA_00165at 177.663 kb on + strand, within CCNA_00165at 177.714 kb on + strandat 177.714 kb on + strandat 177.769 kb on + strandat 177.787 kb on + strandat 177.800 kb on + strandat 177.881 kb on + strandat 178.020 kb on - strand, within CCNA_03915at 178.025 kb on - strand, within CCNA_03915at 178.027 kb on + strand, within CCNA_03915at 178.044 kb on - strand, within CCNA_03915at 178.058 kb on + strand, within CCNA_03915at 178.084 kb on + strandat 178.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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174,189 - CCNA_00163 0.55 -0.2
174,219 - CCNA_00163 0.57 +1.1
174,228 + CCNA_00163 0.57 +1.1
174,235 - CCNA_00163 0.57 -0.3
174,269 + CCNA_00163 0.59 +2.4
174,296 - CCNA_00163 0.60 +0.3
174,306 + CCNA_00163 0.60 +0.4
174,314 - CCNA_00163 0.61 +0.1
174,317 + CCNA_00163 0.61 +0.4
174,322 + CCNA_00163 0.61 +0.6
174,330 - CCNA_00163 0.62 +0.2
174,375 - CCNA_00163 0.64 -0.5
174,394 + CCNA_00163 0.64 +0.8
174,401 + CCNA_00163 0.65 +0.3
174,416 + CCNA_00163 0.65 +0.6
174,421 + CCNA_00163 0.66 +0.3
174,424 - CCNA_00163 0.66 +0.3
174,435 - CCNA_00163 0.66 -0.0
174,437 + CCNA_00163 0.66 +2.1
174,437 + CCNA_00163 0.66 +0.5
174,437 + CCNA_00163 0.66 +0.1
174,437 + CCNA_00163 0.66 +1.2
174,437 + CCNA_00163 0.66 +0.8
174,445 - CCNA_00163 0.67 -0.6
174,445 - CCNA_00163 0.67 -0.0
174,445 - CCNA_00163 0.67 +0.2
174,455 + CCNA_00163 0.67 +0.5
174,463 - CCNA_00163 0.68 -1.4
174,463 - CCNA_00163 0.68 +1.0
174,474 - CCNA_00163 0.68 -1.9
174,475 + CCNA_00163 0.68 +0.7
174,508 + CCNA_00163 0.70 +0.6
174,645 + CCNA_00163 0.76 +0.3
174,651 - CCNA_00163 0.76 +1.0
174,668 - CCNA_00163 0.77 -0.7
174,683 - CCNA_00163 0.77 -0.2
174,757 + CCNA_00163 0.81 +0.3
174,757 + CCNA_00163 0.81 +0.8
174,765 - CCNA_00163 0.81 -0.3
174,783 + CCNA_00163 0.82 -0.2
174,818 + CCNA_00163 0.84 +0.5
174,826 - CCNA_00163 0.84 -1.5
174,934 - CCNA_00163 0.89 -1.5
174,963 + -1.3
175,024 + +0.6
175,024 + +0.3
175,051 - +0.2
175,054 + +1.0
175,062 - +0.6
175,068 - +0.2
175,089 + +0.3
175,111 - -1.8
175,198 - -0.3
175,260 + +0.1
175,387 - CCNA_00164 0.11 +0.4
175,433 + CCNA_00164 0.13 -0.5
175,453 - CCNA_00164 0.15 -0.0
175,453 - CCNA_00164 0.15 +1.2
175,478 + CCNA_00164 0.16 +0.8
175,478 + CCNA_00164 0.16 +0.4
175,478 + CCNA_00164 0.16 -0.8
175,483 + CCNA_00164 0.16 +0.7
175,507 + CCNA_00164 0.17 +0.3
175,649 + CCNA_00164 0.25 +0.5
175,649 + CCNA_00164 0.25 +0.4
175,649 + CCNA_00164 0.25 +0.5
175,649 + CCNA_00164 0.25 +0.8
175,649 + CCNA_00164 0.25 -0.0
175,649 + CCNA_00164 0.25 +0.6
175,653 - CCNA_00164 0.25 +0.0
175,657 - CCNA_00164 0.25 -0.6
175,657 - CCNA_00164 0.25 +0.7
175,657 - CCNA_00164 0.25 -0.0
175,657 - CCNA_00164 0.25 -1.1
175,657 - CCNA_00164 0.25 -0.6
175,686 + CCNA_00164 0.27 -0.1
175,686 + CCNA_00164 0.27 +0.6
175,694 - CCNA_00164 0.27 -0.5
175,694 - CCNA_00164 0.27 +0.7
175,703 + CCNA_00164 0.28 +0.6
175,740 + CCNA_00164 0.29 -0.3
175,748 - CCNA_00164 0.30 -0.6
175,761 - CCNA_00164 0.31 -0.1
175,766 - CCNA_00164 0.31 +0.5
175,767 + CCNA_00164 0.31 +0.2
175,910 + CCNA_00164 0.38 +0.8
175,918 - CCNA_00164 0.39 +0.5
175,918 - CCNA_00164 0.39 +1.5
175,975 + CCNA_00164 0.42 +0.1
175,985 + CCNA_00164 0.42 +1.0
175,991 + CCNA_00164 0.42 +0.3
175,991 + CCNA_00164 0.42 -0.4
175,991 + CCNA_00164 0.42 +0.5
175,991 + CCNA_00164 0.42 +0.1
175,991 + CCNA_00164 0.42 +0.3
175,991 + CCNA_00164 0.42 +0.3
175,991 + CCNA_00164 0.42 -0.0
175,993 - CCNA_00164 0.43 +0.0
175,999 - CCNA_00164 0.43 -1.0
175,999 - CCNA_00164 0.43 -0.3
175,999 - CCNA_00164 0.43 +0.7
175,999 - CCNA_00164 0.43 -0.1
176,006 + CCNA_00164 0.43 -0.3
176,010 + CCNA_00164 0.43 +0.6
176,031 + CCNA_00164 0.45 +0.3
176,063 + CCNA_00164 0.46 +0.4
176,076 - CCNA_00164 0.47 -0.4
176,083 - CCNA_00164 0.47 -0.6
176,121 + CCNA_00164 0.49 +0.5
176,224 - CCNA_00164 0.55 +0.0
176,243 + CCNA_00164 0.56 +0.6
176,250 - CCNA_00164 0.56 +0.1
176,289 - CCNA_00164 0.58 -0.5
176,312 + CCNA_00164 0.59 +0.6
176,320 - CCNA_00164 0.60 -0.7
176,348 + CCNA_00164 0.61 +0.1
176,378 - CCNA_00164 0.63 +0.5
176,383 - CCNA_00164 0.63 -1.0
176,385 + CCNA_00164 0.63 +1.0
176,385 + CCNA_00164 0.63 +0.5
176,385 + CCNA_00164 0.63 +0.5
176,385 + CCNA_00164 0.63 +0.5
176,393 - CCNA_00164 0.63 +0.2
176,393 - CCNA_00164 0.63 +0.4
176,406 + CCNA_00164 0.64 +0.8
176,426 + CCNA_00164 0.65 +0.4
176,426 + CCNA_00164 0.65 +0.1
176,445 - CCNA_00164 0.66 +0.2
176,488 + CCNA_00164 0.68 +0.6
176,496 - CCNA_00164 0.69 -0.8
176,501 + CCNA_00164 0.69 +0.4
176,506 + CCNA_00164 0.69 +1.0
176,509 - CCNA_00164 0.69 +0.5
176,550 + CCNA_00164 0.71 -0.3
176,571 + CCNA_00164 0.73 +0.4
176,596 - CCNA_00164 0.74 -1.2
176,636 - CCNA_00164 0.76 -0.0
176,636 - CCNA_00164 0.76 +0.2
176,638 - CCNA_00164 0.76 +0.0
176,638 - CCNA_00164 0.76 -0.1
176,640 + CCNA_00164 0.76 +0.8
176,680 + CCNA_00164 0.78 +0.9
176,754 + CCNA_00164 0.82 +0.3
176,817 + CCNA_00164 0.85 +0.3
176,838 + CCNA_00164 0.86 -0.0
176,849 + CCNA_00164 0.87 +0.2
176,852 - CCNA_00164 0.87 -0.5
176,913 - +0.5
176,939 + +0.8
177,006 + +0.3
177,007 - +0.0
177,014 - +0.7
177,019 - -0.3
177,026 + +0.3
177,040 + +0.7
177,040 + -0.2
177,087 + -0.8
177,127 - -0.6
177,127 - -1.3
177,141 + -0.1
177,141 + +0.2
177,149 - +0.2
177,153 + +0.5
177,167 + CCNA_00165 0.11 +0.0
177,167 + CCNA_00165 0.11 +0.1
177,167 + CCNA_00165 0.11 +0.7
177,167 + CCNA_00165 0.11 +0.6
177,167 + CCNA_00165 0.11 +0.4
177,175 - CCNA_00165 0.13 +0.5
177,175 - CCNA_00165 0.13 -0.1
177,175 - CCNA_00165 0.13 +0.7
177,233 + CCNA_00165 0.22 +0.0
177,240 + CCNA_00165 0.23 +0.2
177,240 + CCNA_00165 0.23 +0.1
177,248 - CCNA_00165 0.24 +0.6
177,248 - CCNA_00165 0.24 +1.1
177,250 + CCNA_00165 0.24 -0.5
177,255 + CCNA_00165 0.25 -0.3
177,258 - CCNA_00165 0.25 +1.2
177,263 - CCNA_00165 0.26 -0.6
177,273 - CCNA_00165 0.28 -0.1
177,312 + CCNA_00165 0.34 +0.0
177,312 + CCNA_00165 0.34 +0.0
177,312 + CCNA_00165 0.34 -0.1
177,312 + CCNA_00165 0.34 +0.5
177,312 + CCNA_00165 0.34 +0.1
177,312 + CCNA_00165 0.34 +2.5
177,314 + CCNA_00165 0.34 +0.5
177,320 - CCNA_00165 0.35 -0.5
177,320 - CCNA_00165 0.35 +0.2
177,386 - CCNA_00165 0.45 -1.0
177,464 - CCNA_00165 0.57 +0.1
177,472 + CCNA_00165 0.58 -0.1
177,472 + CCNA_00165 0.58 -0.0
177,472 + CCNA_00165 0.58 +0.4
177,472 + CCNA_00165 0.58 +0.5
177,472 + CCNA_00165 0.58 -0.7
177,480 - CCNA_00165 0.59 +0.1
177,481 - CCNA_00165 0.59 +1.2
177,484 + CCNA_00165 0.60 +0.6
177,492 - CCNA_00165 0.61 -0.4
177,528 + CCNA_00165 0.67 -0.0
177,533 + CCNA_00165 0.67 -0.0
177,536 - CCNA_00165 0.68 +0.1
177,645 - CCNA_00165 0.85 -0.7
177,660 - CCNA_00165 0.87 +0.7
177,660 - CCNA_00165 0.87 +0.2
177,663 + CCNA_00165 0.87 -0.4
177,714 + +0.5
177,714 + -0.3
177,769 + +0.2
177,787 + +0.1
177,800 + -2.5
177,881 + -0.3
178,020 - CCNA_03915 0.52 +0.2
178,025 - CCNA_03915 0.55 -0.5
178,027 + CCNA_03915 0.56 -0.1
178,044 - CCNA_03915 0.68 -0.6
178,058 + CCNA_03915 0.78 -0.3
178,084 + -0.2
178,092 - -1.9

Or see this region's nucleotide sequence