Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00107

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00106 and CCNA_00107 are separated by 160 nucleotidesCCNA_00107 and CCNA_00108 are separated by 9 nucleotidesCCNA_00108 and CCNA_00109 are separated by 15 nucleotides CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099 _00106 CCNA_00107: CCNA_00107 - Trm112p-like protein, at 118,260 to 118,457 _00107 CCNA_00108: CCNA_00108 - lon endopeptidase-related protein, at 118,467 to 119,144 _00108 CCNA_00109: CCNA_00109 - thioredoxin, at 119,160 to 120,059 _00109 Position (kb) 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1at 118.128 kb on - strandat 118.156 kb on + strandat 118.162 kb on + strandat 118.172 kb on + strandat 118.179 kb on + strandat 118.259 kb on - strandat 118.461 kb on - strandat 118.461 kb on - strandat 118.461 kb on - strandat 118.465 kb on + strandat 118.513 kb on + strandat 118.521 kb on - strandat 118.531 kb on - strandat 118.532 kb on + strandat 118.532 kb on + strandat 118.532 kb on + strandat 118.537 kb on + strand, within CCNA_00108at 118.540 kb on - strand, within CCNA_00108at 118.561 kb on + strand, within CCNA_00108at 118.574 kb on - strand, within CCNA_00108at 118.604 kb on - strand, within CCNA_00108at 118.611 kb on - strand, within CCNA_00108at 118.611 kb on - strand, within CCNA_00108at 118.617 kb on + strand, within CCNA_00108at 118.623 kb on - strand, within CCNA_00108at 118.629 kb on + strand, within CCNA_00108at 118.684 kb on + strand, within CCNA_00108at 118.684 kb on + strand, within CCNA_00108at 118.684 kb on + strand, within CCNA_00108at 118.770 kb on - strand, within CCNA_00108at 118.828 kb on + strand, within CCNA_00108at 118.878 kb on + strand, within CCNA_00108at 118.891 kb on - strand, within CCNA_00108at 118.914 kb on - strand, within CCNA_00108at 118.925 kb on + strand, within CCNA_00108at 118.968 kb on + strand, within CCNA_00108at 118.971 kb on - strand, within CCNA_00108at 118.976 kb on - strand, within CCNA_00108at 119.033 kb on + strand, within CCNA_00108at 119.033 kb on + strand, within CCNA_00108at 119.041 kb on - strand, within CCNA_00108at 119.112 kb on - strandat 119.112 kb on - strandat 119.143 kb on + strandat 119.152 kb on + strandat 119.161 kb on - strandat 119.170 kb on - strandat 119.173 kb on + strandat 119.181 kb on - strandat 119.185 kb on - strandat 119.191 kb on - strandat 119.247 kb on - strandat 119.268 kb on - strand, within CCNA_00109at 119.306 kb on + strand, within CCNA_00109at 119.337 kb on + strand, within CCNA_00109at 119.344 kb on + strand, within CCNA_00109at 119.344 kb on + strand, within CCNA_00109at 119.345 kb on - strand, within CCNA_00109at 119.352 kb on - strand, within CCNA_00109at 119.397 kb on - strand, within CCNA_00109at 119.397 kb on - strand, within CCNA_00109at 119.407 kb on - strand, within CCNA_00109at 119.423 kb on - strand, within CCNA_00109at 119.447 kb on - strand, within CCNA_00109

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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118,128 - -0.3
118,156 + +0.9
118,162 + -0.2
118,172 + -1.0
118,179 + -1.0
118,259 - +0.3
118,461 - -0.4
118,461 - +0.5
118,461 - +0.1
118,465 + -0.9
118,513 + +0.2
118,521 - +0.2
118,531 - -1.7
118,532 + -2.8
118,532 + -0.0
118,532 + -0.9
118,537 + CCNA_00108 0.10 -0.4
118,540 - CCNA_00108 0.11 +0.2
118,561 + CCNA_00108 0.14 -0.4
118,574 - CCNA_00108 0.16 -0.4
118,604 - CCNA_00108 0.20 +0.1
118,611 - CCNA_00108 0.21 +1.3
118,611 - CCNA_00108 0.21 +0.6
118,617 + CCNA_00108 0.22 +0.4
118,623 - CCNA_00108 0.23 +0.2
118,629 + CCNA_00108 0.24 +0.4
118,684 + CCNA_00108 0.32 -0.1
118,684 + CCNA_00108 0.32 -0.2
118,684 + CCNA_00108 0.32 +0.3
118,770 - CCNA_00108 0.45 +0.2
118,828 + CCNA_00108 0.53 +1.0
118,878 + CCNA_00108 0.61 -0.7
118,891 - CCNA_00108 0.63 +0.2
118,914 - CCNA_00108 0.66 -0.1
118,925 + CCNA_00108 0.68 +0.3
118,968 + CCNA_00108 0.74 +0.2
118,971 - CCNA_00108 0.74 +0.5
118,976 - CCNA_00108 0.75 +0.7
119,033 + CCNA_00108 0.83 -0.9
119,033 + CCNA_00108 0.83 -0.7
119,041 - CCNA_00108 0.85 -0.9
119,112 - -1.2
119,112 - -0.1
119,143 + -0.5
119,152 + -0.4
119,161 - +0.2
119,170 - +0.1
119,173 + -1.2
119,181 - -0.0
119,185 - -0.1
119,191 - +1.6
119,247 - +1.2
119,268 - CCNA_00109 0.12 +0.5
119,306 + CCNA_00109 0.16 -1.3
119,337 + CCNA_00109 0.20 -0.1
119,344 + CCNA_00109 0.20 -0.6
119,344 + CCNA_00109 0.20 -1.8
119,345 - CCNA_00109 0.21 +0.3
119,352 - CCNA_00109 0.21 +0.1
119,397 - CCNA_00109 0.26 -1.4
119,397 - CCNA_00109 0.26 +0.3
119,407 - CCNA_00109 0.27 +0.4
119,423 - CCNA_00109 0.29 +0.6
119,447 - CCNA_00109 0.32 -0.0

Or see this region's nucleotide sequence