Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20980

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20970 and CA264_20975 are separated by 154 nucleotidesCA264_20975 and CA264_20980 are separated by 24 nucleotidesCA264_20980 and CA264_20985 are separated by 3 nucleotidesCA264_20985 and CA264_20990 are separated by 48 nucleotides CA264_20970: CA264_20970 - hypothetical protein, at 57,736 to 58,233 _20970 CA264_20975: CA264_20975 - hypothetical protein, at 58,388 to 58,798 _20975 CA264_20980: CA264_20980 - conjugal transfer protein, at 58,823 to 59,116 _20980 CA264_20985: CA264_20985 - DUF4133 domain-containing protein, at 59,120 to 59,422 _20985 CA264_20990: CA264_20990 - conjugal transfer protein TraG, at 59,471 to 61,915 _20990 Position (kb) 58 59 60Strain fitness (log2 ratio) -1 0 1 2at 58.279 kb on + strandat 58.298 kb on + strandat 58.298 kb on + strandat 58.330 kb on + strandat 58.349 kb on + strandat 58.387 kb on + strandat 58.427 kb on + strandat 58.427 kb on + strandat 58.427 kb on + strandat 58.448 kb on - strand, within CA264_20975at 58.467 kb on - strand, within CA264_20975at 58.537 kb on + strand, within CA264_20975at 58.576 kb on - strand, within CA264_20975at 58.607 kb on + strand, within CA264_20975at 58.702 kb on + strand, within CA264_20975at 58.703 kb on - strand, within CA264_20975at 58.733 kb on - strand, within CA264_20975at 58.735 kb on - strand, within CA264_20975at 58.783 kb on - strandat 58.822 kb on + strandat 58.834 kb on - strandat 58.840 kb on + strandat 58.841 kb on - strandat 58.841 kb on - strandat 58.950 kb on + strand, within CA264_20980at 58.950 kb on + strand, within CA264_20980at 59.000 kb on + strand, within CA264_20980at 59.000 kb on + strand, within CA264_20980at 59.001 kb on - strand, within CA264_20980at 59.114 kb on + strandat 59.135 kb on - strandat 59.147 kb on - strandat 59.147 kb on - strandat 59.147 kb on - strandat 59.197 kb on + strand, within CA264_20985at 59.198 kb on - strand, within CA264_20985at 59.201 kb on + strand, within CA264_20985at 59.201 kb on + strand, within CA264_20985at 59.202 kb on - strand, within CA264_20985at 59.202 kb on - strand, within CA264_20985at 59.202 kb on - strand, within CA264_20985at 59.203 kb on + strand, within CA264_20985at 59.204 kb on - strand, within CA264_20985at 59.204 kb on - strand, within CA264_20985at 59.207 kb on + strand, within CA264_20985at 59.208 kb on - strand, within CA264_20985at 59.208 kb on - strand, within CA264_20985at 59.326 kb on + strand, within CA264_20985at 59.381 kb on + strand, within CA264_20985at 59.381 kb on + strand, within CA264_20985at 59.421 kb on - strandat 59.498 kb on + strandat 59.498 kb on + strandat 59.499 kb on - strandat 59.499 kb on - strandat 59.528 kb on - strandat 59.532 kb on + strandat 59.532 kb on + strandat 59.532 kb on + strandat 59.532 kb on + strandat 59.534 kb on + strandat 59.534 kb on + strandat 59.612 kb on + strandat 59.613 kb on - strandat 59.666 kb on + strandat 59.667 kb on - strandat 59.667 kb on - strandat 59.667 kb on - strandat 59.669 kb on - strandat 59.688 kb on + strandat 59.688 kb on + strandat 59.688 kb on + strandat 59.689 kb on - strandat 59.689 kb on - strandat 59.689 kb on - strandat 59.689 kb on - strandat 59.776 kb on - strand, within CA264_20990at 59.776 kb on - strand, within CA264_20990at 59.785 kb on + strand, within CA264_20990at 59.785 kb on + strand, within CA264_20990at 59.798 kb on - strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.830 kb on + strand, within CA264_20990at 59.831 kb on - strand, within CA264_20990at 59.834 kb on + strand, within CA264_20990at 59.835 kb on - strand, within CA264_20990at 59.915 kb on + strand, within CA264_20990at 59.916 kb on - strand, within CA264_20990at 59.948 kb on - strand, within CA264_20990at 59.987 kb on + strand, within CA264_20990at 60.069 kb on + strand, within CA264_20990at 60.070 kb on - strand, within CA264_20990at 60.070 kb on - strand, within CA264_20990at 60.098 kb on - strand, within CA264_20990at 60.098 kb on - strand, within CA264_20990

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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58,279 + +0.1
58,298 + +0.7
58,298 + -0.5
58,330 + -0.2
58,349 + +1.4
58,387 + -0.9
58,427 + +0.2
58,427 + +0.4
58,427 + -0.1
58,448 - CA264_20975 0.15 +1.1
58,467 - CA264_20975 0.19 -0.8
58,537 + CA264_20975 0.36 +0.1
58,576 - CA264_20975 0.46 -0.5
58,607 + CA264_20975 0.53 +1.7
58,702 + CA264_20975 0.76 -0.5
58,703 - CA264_20975 0.77 +0.2
58,733 - CA264_20975 0.84 -0.4
58,735 - CA264_20975 0.84 -0.1
58,783 - +1.1
58,822 + -0.0
58,834 - -0.1
58,840 + +0.8
58,841 - -0.2
58,841 - +2.2
58,950 + CA264_20980 0.43 +0.1
58,950 + CA264_20980 0.43 +0.6
59,000 + CA264_20980 0.60 +0.5
59,000 + CA264_20980 0.60 +0.5
59,001 - CA264_20980 0.61 +1.3
59,114 + -0.3
59,135 - -0.5
59,147 - +0.6
59,147 - -0.2
59,147 - +0.1
59,197 + CA264_20985 0.25 -1.2
59,198 - CA264_20985 0.26 +0.5
59,201 + CA264_20985 0.27 -0.6
59,201 + CA264_20985 0.27 -0.0
59,202 - CA264_20985 0.27 +1.2
59,202 - CA264_20985 0.27 -0.3
59,202 - CA264_20985 0.27 +1.3
59,203 + CA264_20985 0.27 +0.4
59,204 - CA264_20985 0.28 +0.1
59,204 - CA264_20985 0.28 -0.8
59,207 + CA264_20985 0.29 -0.9
59,208 - CA264_20985 0.29 +0.1
59,208 - CA264_20985 0.29 -0.8
59,326 + CA264_20985 0.68 +0.1
59,381 + CA264_20985 0.86 -0.2
59,381 + CA264_20985 0.86 -0.3
59,421 - -0.1
59,498 + +1.5
59,498 + +0.0
59,499 - +0.7
59,499 - +0.1
59,528 - +0.1
59,532 + +0.3
59,532 + -1.0
59,532 + +0.4
59,532 + -0.6
59,534 + +1.4
59,534 + -0.3
59,612 + +0.9
59,613 - +0.5
59,666 + +0.2
59,667 - +1.5
59,667 - -0.6
59,667 - -0.9
59,669 - -0.6
59,688 + -0.2
59,688 + -0.2
59,688 + +0.5
59,689 - +0.1
59,689 - -1.0
59,689 - -0.4
59,689 - -1.3
59,776 - CA264_20990 0.12 -0.5
59,776 - CA264_20990 0.12 -0.2
59,785 + CA264_20990 0.13 +0.3
59,785 + CA264_20990 0.13 -0.1
59,798 - CA264_20990 0.13 -0.7
59,830 + CA264_20990 0.15 +0.5
59,830 + CA264_20990 0.15 +1.2
59,830 + CA264_20990 0.15 +0.7
59,830 + CA264_20990 0.15 +0.4
59,830 + CA264_20990 0.15 +0.2
59,830 + CA264_20990 0.15 +0.9
59,831 - CA264_20990 0.15 +2.0
59,834 + CA264_20990 0.15 -0.4
59,835 - CA264_20990 0.15 +0.3
59,915 + CA264_20990 0.18 +0.2
59,916 - CA264_20990 0.18 +0.7
59,948 - CA264_20990 0.20 -0.1
59,987 + CA264_20990 0.21 +0.7
60,069 + CA264_20990 0.24 +0.5
60,070 - CA264_20990 0.24 +0.3
60,070 - CA264_20990 0.24 +0.2
60,098 - CA264_20990 0.26 -0.1
60,098 - CA264_20990 0.26 +0.1

Or see this region's nucleotide sequence