Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20400

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20395 and CA264_20400 are separated by 216 nucleotidesCA264_20400 and CA264_20405 are separated by 33 nucleotidesCA264_20405 and CA264_20410 are separated by 59 nucleotides CA264_20395: CA264_20395 - hypothetical protein, at 4,700,843 to 4,701,589 _20395 CA264_20400: CA264_20400 - heptosyltransferase, at 4,701,806 to 4,702,810 _20400 CA264_20405: CA264_20405 - thiamine phosphate synthase, at 4,702,844 to 4,703,422 _20405 CA264_20410: CA264_20410 - hypothetical protein, at 4,703,482 to 4,704,564 _20410 Position (kb) 4701 4702 4703Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4700.873 kb on - strandat 4700.901 kb on + strandat 4700.956 kb on - strand, within CA264_20395at 4701.016 kb on + strand, within CA264_20395at 4701.068 kb on + strand, within CA264_20395at 4701.068 kb on + strand, within CA264_20395at 4701.069 kb on - strand, within CA264_20395at 4701.069 kb on - strand, within CA264_20395at 4701.073 kb on - strand, within CA264_20395at 4701.101 kb on + strand, within CA264_20395at 4701.157 kb on + strand, within CA264_20395at 4701.171 kb on + strand, within CA264_20395at 4701.171 kb on + strand, within CA264_20395at 4701.172 kb on - strand, within CA264_20395at 4701.382 kb on + strand, within CA264_20395at 4701.383 kb on - strand, within CA264_20395at 4701.423 kb on + strand, within CA264_20395at 4701.442 kb on + strand, within CA264_20395at 4701.476 kb on + strand, within CA264_20395at 4701.477 kb on - strand, within CA264_20395at 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.525 kb on + strandat 4701.526 kb on - strandat 4701.526 kb on - strandat 4701.589 kb on + strandat 4701.590 kb on - strandat 4701.616 kb on + strandat 4701.617 kb on - strandat 4701.625 kb on + strandat 4701.631 kb on + strandat 4701.632 kb on - strandat 4701.636 kb on + strandat 4701.663 kb on - strandat 4701.666 kb on + strandat 4701.705 kb on - strandat 4701.712 kb on + strandat 4701.713 kb on - strandat 4701.721 kb on + strandat 4701.722 kb on - strandat 4701.724 kb on + strandat 4701.752 kb on - strandat 4701.761 kb on + strandat 4701.761 kb on + strandat 4701.767 kb on + strandat 4701.767 kb on + strandat 4701.767 kb on + strandat 4701.777 kb on + strandat 4701.817 kb on - strandat 4701.890 kb on + strandat 4701.998 kb on + strand, within CA264_20400at 4702.089 kb on + strand, within CA264_20400at 4702.090 kb on - strand, within CA264_20400at 4702.164 kb on - strand, within CA264_20400at 4702.164 kb on - strand, within CA264_20400at 4702.216 kb on + strand, within CA264_20400at 4702.228 kb on - strand, within CA264_20400at 4702.403 kb on - strand, within CA264_20400at 4702.408 kb on - strand, within CA264_20400at 4702.409 kb on + strand, within CA264_20400at 4702.548 kb on - strand, within CA264_20400at 4702.548 kb on - strand, within CA264_20400at 4702.618 kb on + strand, within CA264_20400at 4702.717 kb on + strandat 4702.741 kb on + strandat 4702.836 kb on - strandat 4702.836 kb on - strandat 4702.851 kb on + strandat 4702.957 kb on + strand, within CA264_20405at 4702.957 kb on + strand, within CA264_20405at 4702.958 kb on - strand, within CA264_20405at 4702.958 kb on - strand, within CA264_20405at 4702.958 kb on - strand, within CA264_20405at 4702.959 kb on + strand, within CA264_20405at 4703.001 kb on - strand, within CA264_20405at 4703.011 kb on + strand, within CA264_20405at 4703.011 kb on + strand, within CA264_20405at 4703.011 kb on + strand, within CA264_20405at 4703.012 kb on - strand, within CA264_20405at 4703.056 kb on - strand, within CA264_20405at 4703.113 kb on + strand, within CA264_20405at 4703.114 kb on - strand, within CA264_20405at 4703.119 kb on - strand, within CA264_20405at 4703.155 kb on - strand, within CA264_20405at 4703.171 kb on + strand, within CA264_20405at 4703.171 kb on + strand, within CA264_20405at 4703.172 kb on - strand, within CA264_20405at 4703.180 kb on + strand, within CA264_20405at 4703.190 kb on + strand, within CA264_20405at 4703.191 kb on - strand, within CA264_20405at 4703.304 kb on + strand, within CA264_20405at 4703.421 kb on - strandat 4703.480 kb on - strandat 4703.483 kb on + strandat 4703.483 kb on + strandat 4703.484 kb on - strandat 4703.512 kb on + strandat 4703.540 kb on + strandat 4703.541 kb on - strandat 4703.551 kb on + strandat 4703.551 kb on + strandat 4703.552 kb on - strandat 4703.554 kb on - strandat 4703.612 kb on - strand, within CA264_20410at 4703.612 kb on - strand, within CA264_20410at 4703.653 kb on + strand, within CA264_20410at 4703.656 kb on + strand, within CA264_20410at 4703.657 kb on - strand, within CA264_20410at 4703.668 kb on + strand, within CA264_20410at 4703.669 kb on - strand, within CA264_20410at 4703.669 kb on - strand, within CA264_20410at 4703.675 kb on + strand, within CA264_20410at 4703.675 kb on + strand, within CA264_20410at 4703.676 kb on - strand, within CA264_20410at 4703.682 kb on + strand, within CA264_20410at 4703.683 kb on - strand, within CA264_20410at 4703.684 kb on + strand, within CA264_20410at 4703.684 kb on + strand, within CA264_20410at 4703.745 kb on + strand, within CA264_20410at 4703.747 kb on + strand, within CA264_20410at 4703.747 kb on + strand, within CA264_20410at 4703.747 kb on + strand, within CA264_20410at 4703.748 kb on - strand, within CA264_20410at 4703.762 kb on - strand, within CA264_20410at 4703.784 kb on + strand, within CA264_20410at 4703.784 kb on + strand, within CA264_20410at 4703.810 kb on + strand, within CA264_20410

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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4,700,873 - +0.3
4,700,901 + +1.2
4,700,956 - CA264_20395 0.15 -0.2
4,701,016 + CA264_20395 0.23 -0.8
4,701,068 + CA264_20395 0.30 -0.4
4,701,068 + CA264_20395 0.30 +0.0
4,701,069 - CA264_20395 0.30 +0.1
4,701,069 - CA264_20395 0.30 -0.2
4,701,073 - CA264_20395 0.31 -0.1
4,701,101 + CA264_20395 0.35 -0.5
4,701,157 + CA264_20395 0.42 -0.3
4,701,171 + CA264_20395 0.44 +0.0
4,701,171 + CA264_20395 0.44 -0.0
4,701,172 - CA264_20395 0.44 +0.0
4,701,382 + CA264_20395 0.72 -0.2
4,701,383 - CA264_20395 0.72 -0.6
4,701,423 + CA264_20395 0.78 -0.8
4,701,442 + CA264_20395 0.80 +0.5
4,701,476 + CA264_20395 0.85 +0.2
4,701,477 - CA264_20395 0.85 -0.3
4,701,525 + +0.7
4,701,525 + -0.9
4,701,525 + +0.6
4,701,525 + -0.9
4,701,525 + -2.0
4,701,525 + -0.5
4,701,526 - +0.5
4,701,526 - +2.4
4,701,589 + +0.3
4,701,590 - -0.5
4,701,616 + -0.4
4,701,617 - +0.8
4,701,625 + +0.0
4,701,631 + -0.4
4,701,632 - -1.1
4,701,636 + -0.0
4,701,663 - -0.2
4,701,666 + -0.5
4,701,705 - -0.9
4,701,712 + -0.6
4,701,713 - -0.3
4,701,721 + +0.2
4,701,722 - +0.7
4,701,724 + -0.3
4,701,752 - -0.0
4,701,761 + -0.2
4,701,761 + -1.5
4,701,767 + +0.1
4,701,767 + +0.5
4,701,767 + -0.2
4,701,777 + +1.4
4,701,817 - -0.5
4,701,890 + -0.1
4,701,998 + CA264_20400 0.19 -2.8
4,702,089 + CA264_20400 0.28 -1.0
4,702,090 - CA264_20400 0.28 -1.0
4,702,164 - CA264_20400 0.36 -1.2
4,702,164 - CA264_20400 0.36 -1.1
4,702,216 + CA264_20400 0.41 -1.8
4,702,228 - CA264_20400 0.42 -0.1
4,702,403 - CA264_20400 0.59 +0.4
4,702,408 - CA264_20400 0.60 -0.9
4,702,409 + CA264_20400 0.60 -0.8
4,702,548 - CA264_20400 0.74 -0.9
4,702,548 - CA264_20400 0.74 +0.1
4,702,618 + CA264_20400 0.81 -1.0
4,702,717 + -0.9
4,702,741 + -0.1
4,702,836 - +1.7
4,702,836 - -0.2
4,702,851 + -1.1
4,702,957 + CA264_20405 0.20 +0.3
4,702,957 + CA264_20405 0.20 -0.1
4,702,958 - CA264_20405 0.20 +0.9
4,702,958 - CA264_20405 0.20 +0.3
4,702,958 - CA264_20405 0.20 -0.4
4,702,959 + CA264_20405 0.20 -0.1
4,703,001 - CA264_20405 0.27 +1.5
4,703,011 + CA264_20405 0.29 -1.4
4,703,011 + CA264_20405 0.29 +0.0
4,703,011 + CA264_20405 0.29 +0.4
4,703,012 - CA264_20405 0.29 -0.1
4,703,056 - CA264_20405 0.37 -2.0
4,703,113 + CA264_20405 0.46 -1.4
4,703,114 - CA264_20405 0.47 -0.3
4,703,119 - CA264_20405 0.47 +2.1
4,703,155 - CA264_20405 0.54 -1.6
4,703,171 + CA264_20405 0.56 -0.0
4,703,171 + CA264_20405 0.56 -0.3
4,703,172 - CA264_20405 0.57 -0.7
4,703,180 + CA264_20405 0.58 +0.1
4,703,190 + CA264_20405 0.60 -0.8
4,703,191 - CA264_20405 0.60 -0.9
4,703,304 + CA264_20405 0.79 +0.3
4,703,421 - +0.3
4,703,480 - -0.1
4,703,483 + -0.2
4,703,483 + -0.0
4,703,484 - -1.1
4,703,512 + -0.2
4,703,540 + -0.1
4,703,541 - -0.0
4,703,551 + -0.1
4,703,551 + -0.1
4,703,552 - -1.5
4,703,554 - +0.0
4,703,612 - CA264_20410 0.12 +0.3
4,703,612 - CA264_20410 0.12 +0.6
4,703,653 + CA264_20410 0.16 -0.3
4,703,656 + CA264_20410 0.16 -0.6
4,703,657 - CA264_20410 0.16 -0.1
4,703,668 + CA264_20410 0.17 -0.7
4,703,669 - CA264_20410 0.17 -0.4
4,703,669 - CA264_20410 0.17 -0.1
4,703,675 + CA264_20410 0.18 -0.3
4,703,675 + CA264_20410 0.18 -1.4
4,703,676 - CA264_20410 0.18 +0.3
4,703,682 + CA264_20410 0.18 -0.2
4,703,683 - CA264_20410 0.19 -0.9
4,703,684 + CA264_20410 0.19 +0.3
4,703,684 + CA264_20410 0.19 +1.2
4,703,745 + CA264_20410 0.24 -0.4
4,703,747 + CA264_20410 0.24 -0.9
4,703,747 + CA264_20410 0.24 +1.1
4,703,747 + CA264_20410 0.24 +1.2
4,703,748 - CA264_20410 0.25 +1.4
4,703,762 - CA264_20410 0.26 -0.4
4,703,784 + CA264_20410 0.28 -0.9
4,703,784 + CA264_20410 0.28 -1.3
4,703,810 + CA264_20410 0.30 -0.3

Or see this region's nucleotide sequence